mRNA_S-firma_F_contig101.186.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig101.186.1 vs. uniprot
Match: D8LFR7_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFR7_ECTSI) HSP 1 Score: 382 bits (982), Expect = 1.170e-128 Identity = 203/266 (76.32%), Postives = 223/266 (83.83%), Query Frame = 1
Query: 37 RRLLHNLLMLAGLSTLFRRSMASHAAAGTRYAVELLAPAEGPVLGVGARNAKASARPAYRVLQEPAGTPFDGLQVCVWVDSTAEGKDTPARSGPFCFEGPQQQLPIDGLGVGSHRISAAVVAPSQQGPTQ-LSEVTTAQIDVVLQQDFVPSYEWQQVXXXXXXPPGLEVQLPLDGVGQKRARVPPSWRLQLYIPGEPEGGGAGGGFFVRTDLHAGSTVLELRREIARHPRFGLP-VDSVRLSLGGRVLGDEETAEGLDLFNRQREL 828
R+L + +++A LS FRR+MAS+AA TRYAV L+APAEGPV GV RNAKASA AY VLQEP G PFDGLQVCVWVDS EGKDT +RSGPFCFEG QQ+LPI+GL VGSHR+SAAVVAP+Q GPTQ +SEVTTAQI+VVLQ+DF PSY+WQQV PPGLEVQLPLDGVGQKRARVPPSWRLQLY+P E +GGGFFVRTDL AGSTVLELRREIAR PRFG V+ VRLSLGGRVLGDEETAEGLDLFNRQREL
Sbjct: 2 RKLAYAWMIVASLSQSFRRNMASYAAGTTRYAVRLVAPAEGPVFGVATRNAKASAVSAYEVLQEPVGAPFDGLQVCVWVDSMIEGKDTASRSGPFCFEGLQQELPINGLEVGSHRLSAAVVAPTQDGPTQQISEVTTAQINVVLQEDFAPSYKWQQVYPWQSVPPGLEVQLPLDGVGQKRARVPPSWRLQLYVPEE-----SGGGFFVRTDLRAGSTVLELRREIARQPRFGGGGVERVRLSLGGRVLGDEETAEGLDLFNRQREL 262
BLAST of mRNA_S-firma_F_contig101.186.1 vs. uniprot
Match: A0A836CHB5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHB5_9STRA) HSP 1 Score: 152 bits (384), Expect = 2.610e-39 Identity = 89/199 (44.72%), Postives = 118/199 (59.30%), Query Frame = 1
Query: 253 LQVCVWVDSTAEGKDTP-ARSGPFCFEGPQQQLPIDGLGVGSHRISAAVVAP-SQQGPTQL---SEVTTAQIDVVLQQDFVPSYEWQQVXXXXXXPPGLEVQLPLDGVGQKRARVPPSWRLQLYI--PGEPEGGGAGGGFFVRTDLHAGSTVLELRREIARHPRFGLPVDSVRLSLGGRVLGDEETAEGLDLFNRQREL 828
L+VC+W D G A SGPFCF PQ + + LG G H +SAAVV S G T L +E + V +++DF P+Y WQ V PPGLEV+LPLDG G++ AR+P W+LQL++ P P G GFF R + G+TV +LR+ IA H LP++ V ++LGG + D ET + LDLFNRQ+EL
Sbjct: 68 LKVCIWGDFLDPGTGAQRAASGPFCFAEPQGAVNMQALGAGLHVLSAAVVQDRSADGETMLELSAERARHTLRVDVKRDFAPTYAWQPVREWQGVPPGLEVRLPLDGSGERTARIPQPWQLQLFVQDPHLP-----GDGFFFRQQITGGTTVGDLRQAIASHREVQLPLELVWMTLGGAPVADHETVKELDLFNRQKEL 261
BLAST of mRNA_S-firma_F_contig101.186.1 vs. uniprot
Match: A0A7S3EU40_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EU40_9EUKA) HSP 1 Score: 87.0 bits (214), Expect = 6.920e-17 Identity = 51/119 (42.86%), Postives = 72/119 (60.50%), Query Frame = 1
Query: 475 FVPSYEWQQVXXXXXX-PPGLEVQLPLDGVGQKRARVPPSWRLQLYIPGEPEGGGAGGGFFVRTDLHAGSTVLELRREIARHPRFGLPVDSVRLSLGGRVLGDEETAEGLDLFNRQREL 828
F+PSY+WQ + PPGL+V LPLDG QKRAR+PP+W+LQ+++ G G++ ++ + +T L LRR A PV+ VRL L G LGD +TAE L+LF + +L
Sbjct: 18 FLPSYQWQFIPEGVTGVPPGLQVDLPLDG-RQKRARIPPTWQLQVWL-------GYDLGYWRYREVSSNTTALHLRRAAAAFA--DAPVERVRLRLAGAELGDHQTAEELNLFGQSSQL 126
BLAST of mRNA_S-firma_F_contig101.186.1 vs. uniprot
Match: A0A7S0JI27_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JI27_9EUKA) HSP 1 Score: 75.5 bits (184), Expect = 8.750e-12 Identity = 46/124 (37.10%), Postives = 71/124 (57.26%), Query Frame = 1
Query: 475 FVPSYEWQQVXXXXXXPPGLEVQLPLDGVGQKRARVPPSWRLQLYIPGEPEGGGAGGGFFVRTDLHAGSTVLELRREIARHPRFGLPVDSVRLSLGGR--VLGDEETAEGLDLFNRQRELTPSL 840
F +YEWQ++ PPGL+V+LPLDG G +RAR+P W+LQ+++ G+ G ++R + +TV E+R A H G+P+ V L+ GG D++T E L F+R E+ S+
Sbjct: 127 FEAAYEWQRIEPGVTLPPGLDVELPLDG-GAQRARIPQRWQLQVWL-GDEWG-------YLRKQVTRETTVAEIRDAAATHA--GVPLSRVSLTFGGGGGEPDDDKTVEELRFFSRMHEVDVSI 239
BLAST of mRNA_S-firma_F_contig101.186.1 vs. uniprot
Match: A0A7S4BSU6_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BSU6_CHRCT) HSP 1 Score: 73.2 bits (178), Expect = 1.450e-10 Identity = 49/127 (38.58%), Postives = 62/127 (48.82%), Query Frame = 1
Query: 472 DFVPSYEWQQVXXXXXXPPGLEVQLPLDGVGQKRARVPPSWRLQLYIPGEPEGGGAGGGFFVRTDLHAGSTVLEL--------RREIARHPRFGLPVDSVRLSLGGRVLGDEETAEGLDLFNRQREL 828
DF SYEWQ V P GLEVQL LDG ++ AR+PP+WRLQL++ G G G F+RTD+ + V E+ RH G L G L E T E LF+R+ +L
Sbjct: 169 DFAASYEWQSVREGQSVPSGLEVQLSLDGSHRRSARIPPTWRLQLFL-----GEGLG---FLRTDVLRDTRVREVLAAAEAQAAAAALRHHLDGAHKACFSLFAGSDWLDAESTVESAQLFSRRGQL 287
BLAST of mRNA_S-firma_F_contig101.186.1 vs. uniprot
Match: A0A7S4F646_CHRCT (Hypothetical protein n=4 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F646_CHRCT) HSP 1 Score: 73.2 bits (178), Expect = 1.690e-10 Identity = 49/127 (38.58%), Postives = 62/127 (48.82%), Query Frame = 1
Query: 472 DFVPSYEWQQVXXXXXXPPGLEVQLPLDGVGQKRARVPPSWRLQLYIPGEPEGGGAGGGFFVRTDLHAGSTVLEL--------RREIARHPRFGLPVDSVRLSLGGRVLGDEETAEGLDLFNRQREL 828
DF SYEWQ V P GLEVQL LDG ++ AR+PP+WRLQL++ G G G F+RTD+ + V E+ RH G L G L E T E LF+R+ +L
Sbjct: 188 DFAASYEWQSVREGQSVPSGLEVQLSLDGSHRRSARIPPTWRLQLFL-----GEGLG---FLRTDVLRDTRVREVLAAAEAQAAAAALRHHLDGAHKACFSLFAGSDWLDAESTVESAQLFSRRGQL 306
BLAST of mRNA_S-firma_F_contig101.186.1 vs. uniprot
Match: A0A7S2CCU8_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CCU8_9EUKA) HSP 1 Score: 65.9 bits (159), Expect = 1.220e-9 Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query: 523 PPGLEVQLPLDGVGQKRARVPPSWRLQLYIPGEPEGGGAGGGFFVRTDLHAGSTVLELRREIARHPRFGLPVDSVRLSLGGRVLGDEE-TAEGLDLFNRQ 819
PPGLE++LPLDGVG +RAR+PP+W L L++ +P G G ++ G+T+ ELRR ++ D+V L +G VL D++ TAE + LF R+
Sbjct: 8 PPGLEIELPLDGVGIRRARIPPAWVLPLWM--DP-----GTGSKRSIEVTRGTTIGELRRFVSVECTR-CDADAVTLIIGDIVLDDDQATAEDVGLFERR 99
BLAST of mRNA_S-firma_F_contig101.186.1 vs. uniprot
Match: A0A7S2GH90_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GH90_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 5.820e-9 Identity = 43/126 (34.13%), Postives = 60/126 (47.62%), Query Frame = 1
Query: 472 DFVPSYEWQQVXXXXXXPPGLEVQLPLDGVGQKRARVPPSWRLQLYIPGEPEGGGAGGGFFVRTDLHAGSTVLELRREIARHPRFGLPVDSVRLSL---GGRVLGDEETAEGLDLFNRQRELTPSL 840
+F P+YEW + P GLE+ L +DG + R+PP WRLQL++ FVR D++ S + + E R G+ VR+S L + TAE L LF R+R L SL
Sbjct: 97 EFTPTYEWGPIGAHQSVPEGLEIVLGMDGTRTRSGRIPPVWRLQLWVDQAHR--------FVRVDVNRESRLSTITAEAGRV--LGVNPSRVRVSCPAGDSSPLDPQATAEELHLFERRRSLRMSL 212
BLAST of mRNA_S-firma_F_contig101.186.1 vs. uniprot
Match: A0A7S0L4V0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L4V0_9EUKA) HSP 1 Score: 67.0 bits (162), Expect = 6.850e-9 Identity = 37/81 (45.68%), Postives = 47/81 (58.02%), Query Frame = 1
Query: 475 FVPSYEWQQVXXXXXXPPGLEVQLPLDGVGQKRARVPPSWRLQLYIPGEPEGGGAGGGFFVRTDLHAGSTVLELRREIARH 717
F+PSYEWQ V P GLEV L LDG Q+ AR+PPSWRLQ+Y+ GA GF +RTD+ + + E+ H
Sbjct: 158 FLPSYEWQDVAEGQAVPSGLEVHLSLDGSHQRTARIPPSWRLQVYL-------GAHLGF-LRTDVQRTTKLHEIIAAATEH 230
BLAST of mRNA_S-firma_F_contig101.186.1 vs. uniprot
Match: A0A7S2MAR9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MAR9_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 3.310e-8 Identity = 46/143 (32.17%), Postives = 65/143 (45.45%), Query Frame = 1
Query: 334 PQQQLPIDGLGVGSHRISAAVVAPSQ---QGPTQLSEVTTAQIDVVLQQDFVPSYEWQQVXXXXXXPPGLEVQLPLDGVGQKRARVPPSWRLQLYIPGEPEGGGAGGGFFVRTDLHAGSTVLELRREIARHPRFGLP-VDSVR 750
P + G+ G H I A + + QG + V +L F PSY W++V PPGLEV++ L G G K AR+P +WR+Q+++ F+R DL A + V L E A+ L VD VR
Sbjct: 29 PLAPMQFSGMASGKHTIWALLYDKGRDTVQGAVDIRRVE------ILPTSFQPSYSWERVYPQQSIPPGLEVRIDLGGSGLKTARIPQTWRIQVWVDEVAR--------FLRADLTATTQVTVLLTEAAKMAGVSLSCVDLVR 157 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig101.186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig101.186.1 >prot_S-firma_F_contig101.186.1 ID=prot_S-firma_F_contig101.186.1|Name=mRNA_S-firma_F_contig101.186.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=328bp MPRRLLHNLLMLAGLSTLFRRSMASHAAAGTRYAVELLAPAEGPVLGVGAback to top mRNA from alignment at S-firma_F_contig101:54692..57671- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig101.186.1 ID=mRNA_S-firma_F_contig101.186.1|Name=mRNA_S-firma_F_contig101.186.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2980bp|location=Sequence derived from alignment at S-firma_F_contig101:54692..57671- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig101:54692..57671- >mRNA_S-firma_F_contig101.186.1 ID=mRNA_S-firma_F_contig101.186.1|Name=mRNA_S-firma_F_contig101.186.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1968bp|location=Sequence derived from alignment at S-firma_F_contig101:54692..57671- (Sphaerotrichia firma ET2_F female)back to top |