mRNA_S-firma_F_contig10094.172.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10094.172.1
Unique NamemRNA_S-firma_F_contig10094.172.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10094.172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10094contigS-firma_F_contig10094:248..1487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10094.172.1prot_S-firma_F_contig10094.172.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10094 251..1430 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.5188506-UTR-S-firma_F_contig10094:247..2501622815535.5188506-UTR-S-firma_F_contig10094:247..250Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10094 248..250 +
1696949397.3954477-UTR-S-firma_F_contig10094:247..2501696949397.3954477-UTR-S-firma_F_contig10094:247..250Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10094 248..250 +
1622815535.5671146-UTR-S-firma_F_contig10094:1430..14871622815535.5671146-UTR-S-firma_F_contig10094:1430..1487Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10094 1431..1487 +
1696949397.445424-UTR-S-firma_F_contig10094:1430..14871696949397.445424-UTR-S-firma_F_contig10094:1430..1487Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10094 1431..1487 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.5312257-CDS-S-firma_F_contig10094:250..3051622815535.5312257-CDS-S-firma_F_contig10094:250..305Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10094 251..305 +
1696949397.409396-CDS-S-firma_F_contig10094:250..3051696949397.409396-CDS-S-firma_F_contig10094:250..305Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10094 251..305 +
1622815535.5472972-CDS-S-firma_F_contig10094:1179..14301622815535.5472972-CDS-S-firma_F_contig10094:1179..1430Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10094 1180..1430 +
1696949397.4253263-CDS-S-firma_F_contig10094:1179..14301696949397.4253263-CDS-S-firma_F_contig10094:1179..1430Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10094 1180..1430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10094.172.1

>prot_S-firma_F_contig10094.172.1 ID=prot_S-firma_F_contig10094.172.1|Name=mRNA_S-firma_F_contig10094.172.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=102bp
MSPDLTILFGIDESRKNAGWQQGRTVLHAVSSIPGPPNCMFRVRYRWCAW
PLYEKRGRQPANFLKEHLFVMLKELFREPSLTGKRRTLLDWRKSNEWKWQ
C*
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mRNA from alignment at S-firma_F_contig10094:248..1487+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10094.172.1 ID=mRNA_S-firma_F_contig10094.172.1|Name=mRNA_S-firma_F_contig10094.172.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1240bp|location=Sequence derived from alignment at S-firma_F_contig10094:248..1487+ (Sphaerotrichia firma ET2_F female)
TTCATGTCCCCTGATCTGACAATACTTTTCGGGATAGACGAGAGCCGAAA
GAACGCAGGTGAGAAGTTCTACAATTTAGCTAGCATATCCCGCATAAGCA
TCGAATGGAGCCCGCTAGGCTTGATGCTTATTTCCATATCTAAGAACGTA
GCCACAGGGCCTTGTTGCTCTTCCGTTATTCGTACTGGGCTATCTACTTC
GACTCCGTCCTCATCTAGTACTCGTGTAGGATACATCCCTCCATATGTCC
CCCCATCTTGGTAAATAATATCCTTAAATTGGGGTTCCGTCCCCACGTTA
CCTACGGAAAATATGTCATCAATATACAGTTTGGTGTGGGTGGCAAATCG
TTCTATAAAACCCCGAGGGTAGAGAGGTACCCGTGAGTTGTGTATAGCAT
CCTCATACTCACAAATCTAGCTTGCAGATATTAGAATTCACGGAAAAATG
CAAAAATCTGAGCTATTTCTGGTGCCGGCGGCATGCCCATAAAAATCCCT
GCCGATTGTTTAAAATCCCATTGCCAAACTGCACAAGTCCTTCATCCAAA
ATAAACTCAATTCATTCCATAATTAAGTCTGGGCCTATGCAAAATTCCCG
GTGTTTACCTTCGTTAGGGTCATTTTCCGCGGGGGTGGTTTGGGACCACA
TAATCTCTCTATTGACTGGTCTGACTTGGTCCGCAAAACCGCATCTAAAG
TAAATGGATTCAACCTTGTGTTCCCCGTATTGATACCCAAAGGGCGATTT
TCTGCGCGGATGTTATTTTGTTCAGCTCCCAAAAGAGGTTAGGCCGGTAG
AAACGGGCGAATCTACCTTCATCTCGAGTGGTTTTTGGCGAAAACATCTG
CAGTGATGAGCAGACCAAAATGCCGCATGTGCAGAGCGCTCGCTGTGGTC
TAACCGTTCCCTTGTGTCTCTTTGTTCTTCAGGATGGCAACAAGGGAGGA
CAGTGTTGCACGCCGTGAGTTCAATACCCGGCCCTCCGAATTGCATGTTC
CGAGTGCGATACAGGTGGTGTGCATGGCCATTATACGAGAAGAGGGGTCG
TCAGCCAGCGAATTTCCTGAAAGAGCATCTGTTCGTAATGCTCAAAGAAC
TATTCCGAGAGCCCTCCTTGACAGGGAAACGGCGGACACTTTTGGATTGG
CGGAAGAGCAACGAGTGGAAGTGGCAATGCTGATGGATGCGACAGCAGTG
GATTTCCACTTTCTTGAACGGCGCGGTCACAACACGGAGG
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Coding sequence (CDS) from alignment at S-firma_F_contig10094:248..1487+

>mRNA_S-firma_F_contig10094.172.1 ID=mRNA_S-firma_F_contig10094.172.1|Name=mRNA_S-firma_F_contig10094.172.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=612bp|location=Sequence derived from alignment at S-firma_F_contig10094:248..1487+ (Sphaerotrichia firma ET2_F female)
ATGTCCCCTGATCTGACAATACTTTTCGGGATAGACGAGAGCCGAAAGAA
CGCAGATGTCCCCTGATCTGACAATACTTTTCGGGATAGACGAGAGCCGA
AAGAACGCAGGATGGCAACAAGGGAGGACAGTGTTGCACGCCGTGAGTTC
AATACCCGGCCCTCCGAATTGCATGTTCCGAGTGCGATACAGGTGGTGTG
CATGGCCATTATACGAGAAGAGGGGTCGTCAGCCAGCGAATTTCCTGAAA
GAGCATCTGTTCGTAATGCTCAAAGAACTATTCCGAGAGCCCTCCTTGAC
AGGGAAACGGCGGACACTTTTGGATTGGCGGAAGAGCAACGAGTGGAAGT
GGCAATGCTGAGATGGCAACAAGGGAGGACAGTGTTGCACGCCGTGAGTT
CAATACCCGGCCCTCCGAATTGCATGTTCCGAGTGCGATACAGGTGGTGT
GCATGGCCATTATACGAGAAGAGGGGTCGTCAGCCAGCGAATTTCCTGAA
AGAGCATCTGTTCGTAATGCTCAAAGAACTATTCCGAGAGCCCTCCTTGA
CAGGGAAACGGCGGACACTTTTGGATTGGCGGAAGAGCAACGAGTGGAAG
TGGCAATGCTGA
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