mRNA_S-firma_F_contig1009.168.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1009.168.1 vs. uniprot
Match: D8LCE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCE9_ECTSI) HSP 1 Score: 202 bits (514), Expect = 5.980e-49 Identity = 481/1306 (36.83%), Postives = 598/1306 (45.79%), Query Frame = 1
Query: 79 PVPTTRTLRMFLGVLKHNPAGVIREVGVLLMLHVSSTEVA----IAADAAAA---EVPSPLLSNIGCTGGGRGGRGPQPQSKQRRESAHLKRRVEEAAAVLAVALSTEKRRVGLMAAG-GVTATRLTKNNKKTRFEHQLRQPAKVEDRLQAWAATRGREASALKEILALSAEGE---LGASSAGARLVRDLAGRIPVGQVGKALPEAGRVLGFISSATGAVAQDCANVTGSAVADAPVEPDSFSNGTMDEPSAAGETFRPSPNDLVVSESSTSNSAGSSDQPIEDGGFSDSRSSAAPAIWES--SSSDLMPDSEQRAENAPPRLRTSDPSVI-----------------SGSSSNSAGSSDHRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTASFVSALSLCDE-------DYG-----------ELAPDLIRRIKYYRSRLERSVQQELAQSGSDEAFFVNDAAGSTPAGATVAVEDRSLDLLNGGSAPSVDDGLVGGAGAAEEPVAAANWLAGP-------FDGNALGSPNPSSDGASFTI-WETSTSEAESEKRCHKDASPADHGTP-AAAATSDEQPMELKMPSSWPADPLENNRDPLGDIPLVSDDGERNLWDDILDEQLSKCPPVQPRVARRMSXXXXXXXXXXXXXXXXXXXXADGGRPSFA-TMSAEPVVVAGNHEHAGEEKTKEEWEEELIGQELDDGERDXXXXXXXXXXXXKKEENMPHDSSSSGLEFDPN-APSLGLLSDALQHQYQHEEEQKEEPAAADLSLSRKYASLLTKACG-------SMVDIIQGVNVDISLVRAVDTAAAAACAAQVAVSEAMALLDKHLATLPDDTSTRSELQGSLSPPSLSSSAAGEAA-------------------------------------EEARCGAETSRLPHERGGVCCDEHKPAQSEGGRGGGKLKPL--FSSFDVDVGAWNXXXXXXXXXXXXXGMDDDARRTQTVKDGKEGRQTGEETRFKGKWGVGSHEGCAVGGPAGCGKPWGSIVAESKLPVQWYVEQNPGNMGGSLAQLCGRIERRXXXXXXXXXAPEMEGGATSTPAPRVPSCASLSSRSXXXSSPPSTSYTVASGSPWALGHAQGNE---ESLLAMPSASAAEGAAATES-----------AVEAYRLSHSHTEMTERWPAGVLVASKALVAEVPGLEEHDRRTFEAVFERSVRRGVLGHPR 3639
PVPT R LRM L VLKHNPAG ++EVGVLLMLH ++ EVA +AD AA E PS L+ G G G Q + KQR ESA LKRRV+EAAAVLA+AL+ K G GV K +KTRF HQLRQP VED LQ WAATRGRE L+E+L LS EGE + S + A+LVRD RI +V KALPEAG VL FIS A GAV S ADA V+ +D PS AG +L+ S+ AG+S S SS+ P IW S S SD + + A S++ SAGS + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXX A S C D G +L D+ R + + ++ S S + V AAG+ GA V+V + L+ S D V E + + LA P + + P+ +S G + W+ S + ++ S + G A AA D Q E+ W DPL D +GDIPLV++DGERN WDDIL+EQLSKC P+Q R R + G S A T A + + H E +T WE + ++ + ++ + P + LE P+ AP G A+ + Q + + Y + A G S N+ + V A T AA AA+ A S A A ++ + T ++ L+ S + S A AA EE R + R P C DE P ++ G + L F + DV+V W+ M D R ++ G GR+TG G+ G + CGK WGSI ES L VQ +VE+ G+MGGSLAQLC + E + XXXXXXXX PE+E SC + + XX +G E SLL A +A AA TES A +YRLS H EMT WP +LVASK+L+A+VPGLEEH RR+F+ E+SVRRGV+G PR
Sbjct: 257 PVPTARCLRMLLSVLKHNPAGAVQEVGVLLMLHAAAIEVAKPTPASADGAADHPNETPSALVPAKGGVGAGTARARHQTRVKQREESAKLKRRVDEAAAVLAIALTAAKTSGMRTPRGAGVAVIAKKKGGRKTRFRHQLRQPPNVEDGLQVWAATRGREVFGLRELLGLS-EGEPPVVQPSPSHAQLVRDRVARISARKVEKALPEAGHVLEFISYAVGAVVGVITTAGDSNDADALVD--------LDRPSTAGG------GNLLTGGKGESSVAGASL----------SASSSDPKIWASTTSGSDAVVAAGDLANGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSEDSAAASAGSIEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCADFAPGSLSAEXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAEIGSTQGSCTTSATCGGGDGGAALTAPEAPAFDLERDVTDSCLGLRGKHDADSSPLVSPSPSRDDAAVA-AAGACAGGALVSVPGETPSLV----VSSFSDDAVAXXXT-REASSGSRKLAAPRQPLFTLAESDDEDFPSSASSGTQVVVVWKRPKSHDDYFQQQKPRTSASGAGAADALAAAEDSQNGEM-----WTVDPL---GDIMGDIPLVTEDGERNAWDDILEEQLSKCRPLQDRADRSPASPLINQRFYSDRGNGGGPITTTAGDGSAAYTHDASSDIDPSSQLHGRESQT---WENNYGYRRWEEPD----PTNTSFIPEAPQQRSTPPGGTFRPLELSPSGAPVTGGRVRAMLNARVASRSQDGDLSGVLEQRGLDYGAQGHDAVGENGFKGGSPTGGYDDPNIYWAEVTAGATREVAAEAAERAASAAEAY-EQRMRTGRGGHASGEWLEARSSAIAAGSIARVAAATXXXXXQLKAXXXXXXXXXXXXXXXXXXXXRLHLPQREEDRWEQASDRRP------CRDE--PDGNDDTEQGNAMPSLSAFYTVDVNVADWDWSSVGGDKR-----MSDVGRSAGVLEGG--GRETGCGPESLGESSTKRATGFGMATTLRCGKAWGSIACESNLSVQRHVEKRKGHMGGSLAQLCEKNELKKXXXXXXXXXPEVEDDMRLKSTTSKWSCQLTNRQHRXXXXXXXXXXXXXXXXXXXXXXXKGRETNGRSLLG--GAGSALSAAGTESVQTPPITPHALAPSSYRLSDQHAEMTRLWPTALLVASKSLIADVPGLEEHGRRSFKEALEQSVRRGVMGRPR 1498
BLAST of mRNA_S-firma_F_contig1009.168.1 vs. uniprot
Match: A0A6H5JI23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI23_9PHAE) HSP 1 Score: 171 bits (434), Expect = 2.540e-39 Identity = 491/1559 (31.49%), Postives = 607/1559 (38.94%), Query Frame = 1
Query: 58 TPVLLPVPVPTTRTLRMFLGVLKHNPAGVIREVGVLLMLHVSSTEVA----IAADAAAA---EVPSPLLSNIGCTGGGRGGRGPQPQSKQRRESAHLKRRVEEAAAVLAVALSTEKRRVGLMAAGGVTATRLTKNNKKTRFEHQLRQPAKVEDRLQAWAATRGREASALKEILALSAEGE---LGASSAGARLVRDLAGRIPVGQVGKALPEAGRVLGFISSATGAVAQDCANVTGSAVADAPVEPDSFSNGTMDEPSAAGETFRPSPNDLVVSESSTSNSAGSSDQPIEDGGFSDSRSSAAPAIWES--SSSDLMPDSEQRAENAPPRLRTSDPSVI-----------------SGSSSNSAGSSDHRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTASFVS------------------ALSLCDEDYGELAPDLIRRIKYYRSRLERSVQQELAQSGSDEAFFVNDAAGSTPAGATVAVEDRSLDLLNGGSAPSVDDGLVGGAGAAEEPVAAANWLAGP---------FDGNALGSPNPSSDGASFTIWETSTSEAES--EKRCHKDASPADHGTPAAAA-TSDEQPMELKMPSSWPADPLENNRDPLGDIPLVSDDGERNLWDDILDEQLSKCPPVQPRVARRMSXXXXXXXXXXXXXXXXXXXXADGGRPSFATMSAEPVVVAGNHEHAGEEKTKEEWEEELIGQ----------ELDDGERDXXXXXXXXXXXXKKEENMPHDSSSSGLEF---DPN---APSLGLLSDALQHQYQHEEEQKEEPAAADL------------SLSRKYASLLTKACGSMVDIIQGVNV---DISLVRAVDTAAAAACAAQVAVSEAMALLDKH---------------------LATLPDDTSTRSELQ---------------------------------------GSLSPPSLSSSAA----------------------------------------------------------------------------GEAAEEARCGAET--SRLPHERGGVCCDE--------------------------------------------------HKPAQSEGG--------------------RGGGKLKPL--FSSFDVDVGAWNXXXXXXXXXXXXXGMDDDARRTQTVKDGKEGRQTGEETRFKGKWGVGSHEGCAVGGPAGCGKPWGSIVAESKLPVQWYVEQNPGNMGGSLAQLCGRIERRXXXXXXXXXAPEMEGGATSTPAPRVPSCASLSSRSXXXSSP---PSTSYTVASGSP------------------------------WALGHA---------------------QGNEESLLAMPSASAAEGAAATES-----------AVEAYRLSHSHTEMTERWPAGVLVASKALVAEVPGLEEHDRRTFEAVFERSVRRGVLGHPR 3639
TP + VPVPT R LRM L VLKH P GV++EVGVLLMLH ++ EVA +AD AA E PS L+ G G G + Q KQR ESA +KRRV+EAAAVLA A+ T R L AG A K + KTRF HQLRQP VED LQAWAATRGRE L+E+L LSA GE + + A A+LVRD RI G+V KALPEAG VL FIS A GAV S ADA V+ +D PS AG +L+ S+ AG+S SS+ P IW S S SD + + A S++ SAG+ + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A S AL++ + +L D+ R + + ++ + S + V AAG++ GA VAV + + S D V A A E + LAGP D S + SSD +W+ S +S ++ +AS AD AA T E +M W DPL D +GDIPLV++DGERN WDDIL+EQLSKC P+Q R + +GG P AT + H GEE + E+ G+ E D E++ SSSS L + D N A S L + Q + SL+ YA L C SM +Q ++ + ++ AV A AAC A+ AV+ A+ LLDKH LA D S+L G+ P LS S A EAAE A AE R+ RGG DE H P + E G L L F+ DV+V W+ G R+ G+ G +TG + G+ G CGK WGSI ES L VQW+VE+ GNMGGSLAQLC + ER+ XXXXXXX PE+E R S LS R+ PST+ W+ A + NE SLL A +A A+ TES A +YRLS H +MT+RWPA +LV SK+L+A+VPGLEE+ RR+FE E+SVRRG++G PR
Sbjct: 422 TPPRVRVPVPTARCLRMLLSVLKHKPTGVVQEVGVLLMLHAAAIEVAKPTPTSADGAAGHPNETPSALVPAKGDVGAGTARA--RHQVKQREESAKMKRRVDEAAAVLATAVKTSGMRT-LQGAG--VAVIAKKGSHKTRFRHQLRQPPNVEDGLQAWAATRGREVFGLRELLGLSA-GEPPIVQPAPAHAQLVRDRVARISAGKVKKALPEAGHVLEFISYAAGAVVGVMTTAGDSNEADALVD--------LDRPSTAGG------GNLLTGGKGESSVAGASL----------GTSSSDPKIWASTTSGSDAVVAAGDLANGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSEDSAAVSAGNIEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADFTPGSLSAEDPVAWKPSMSGPAQRIEGSPRSLASHDTAAEIGSTQGSRTTSATCGGGDGGAALTVPEAPAFDLGRDVTDSCLGLRGKQDADASPLVSPASSRDDTAVA-AAGASAGGALVAVPGETTSFV----VSSFSDDAVT-APATREASGGSRQLAGPRQPLFTLAESDDEDFPS-SASSDNLVVVVWKRPKSLDDSFEPQKPRTNASGADAADALVAAETVKEDSQNGEM---WTVDPL---GDIMGDIPLVTEDGERNAWDDILEEQLSKCRPLQDHTDRSAAPPLITQRSYPDRN--------NGGSPIIATARDGST----GYTHDGEENVVLGRKNEISGRPAGLRARVRNEAGDEEQEGMMPGGYIGDDDDAASIYISYSSSSSLGYGLSDHNSIDADSCSWLVGGIPTPEQQQXXXXXXXXXXXXXXXXXXSRPMSWSLASHYAIFLDTTCRSMRSSLQDEDLGDSEAAVREAVGVAELAACEARQAVATAVDLLDKHRAQQESRSFTSSSNSPQQPPQLAPASSDIDPSSQLHRRESQAWEDNHGHRRWEEPDPANTSFVAEAPQQRSTPPGGTFRPLELSPSGAPVTGGRVRAMLRARVKGRSQDAELSGVLEQRGLDNGTQGHDAVGENGSKGGSPTGGYDNLDIYGAEATAGATREVDAEAAERAASAAEAYEQRMRTGRGGHASDEWLEARSSAIAARSIARVAAATAARATELKAASAPAXXXXXXXXXXDHHDLHLPQREEDQWEQASDRRSCRDESDGDEFIEQGNDLPSLSAFNRVDVNVADWDWSSVGGGEKISDVG------RSAGFLAGERG-ETGRGAEYLGESSAKRATGFGTATTLRCGKAWGSIACESNLSVQWHVEKRKGNMGGSLAQLCEKNERKKXXXXXXXRQPEVEENRRLKFEARQRS-GGLSPRAGLVGDGWKYPSTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKWSCQLANKQXXXXXXXXXXXXXXXXXXETNERSLLG--GAGSALSASGTESVQTPPLTPAALAQASYRLSDQHADMTQRWPAALLVTSKSLIADVPGLEEYGRRSFEEALEQSVRRGLMGRPR 1915 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1009.168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1009.168.1 >prot_S-firma_F_contig1009.168.1 ID=prot_S-firma_F_contig1009.168.1|Name=mRNA_S-firma_F_contig1009.168.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=1218bp MAVQTEAEPTPPRVVIVSTPVLLPVPVPTTRTLRMFLGVLKHNPAGVIREback to top mRNA from alignment at S-firma_F_contig1009:15256..21383+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1009.168.1 ID=mRNA_S-firma_F_contig1009.168.1|Name=mRNA_S-firma_F_contig1009.168.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=6128bp|location=Sequence derived from alignment at S-firma_F_contig1009:15256..21383+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1009:15256..21383+ >mRNA_S-firma_F_contig1009.168.1 ID=mRNA_S-firma_F_contig1009.168.1|Name=mRNA_S-firma_F_contig1009.168.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=7308bp|location=Sequence derived from alignment at S-firma_F_contig1009:15256..21383+ (Sphaerotrichia firma ET2_F female)back to top |