mRNA_S-firma_F_contig1008.152.1 (mRNA) Sphaerotrichia firma ET2_F female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1008.152.1 vs. uniprot
Match: A0A6H5KUE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUE4_9PHAE) HSP 1 Score: 414 bits (1063), Expect = 1.710e-137 Identity = 217/285 (76.14%), Postives = 234/285 (82.11%), Query Frame = 1 Query: 1 AVLVLLLSVL-HASAWLTP-----GLVR--QGSFVSQVATPEPATRTPVAR-------RRQVLTCKLDRLPTRTLKRVVPLRPTTEKYLAFFGQTPFERRRKMINMLGGLFAFYWAAFFATRNVYILGPGGINAIAWRGSCLAVFLQTFLRPMVGSYNRALELWGAGSKEARRKTKGALFTGRVTRTGFALSPQASKHRSHFQMLVEDESGRELLFDVPPVPEYRQIQRGMQCAVVVLSRSSGFYELTGVTEAYLPELDLFVGRFPLLDKRVFWGLLKERNERDR 810
A+L LLLS H AW P GL+ Q SF + TP T R RRQV TC+LDRLP RTLKRVVPLRPT EKYLA FGQTP +RRRKM+N LGGLFAFYWAAFFATRNVY+LGPGGINAIAWRGSCLAVFLQTFLRP+VGSYNRALELWG+GS+E RRKTKGALFTGRVT+TGFALS QAS HR+HFQMLVEDESGRELLFDVP VPEYR+I++GM CAVVVLSRSSGFYELTGVTEAYLPELDLFVGRFPLLDKRVFW LL ++N R R
Sbjct: 8 ALLPLLLSFFQHTHAWTVPLPLSGGLIAPCQQSFAATPVTPAVTATTTARRSHDGRDTRRQVPTCRLDRLPVRTLKRVVPLRPTPEKYLAHFGQTPLDRRRKMVNFLGGLFAFYWAAFFATRNVYVLGPGGINAIAWRGSCLAVFLQTFLRPVVGSYNRALELWGSGSREERRKTKGALFTGRVTKTGFALSSQASNHRAHFQMLVEDESGRELLFDVPQVPEYRRIRKGMSCAVVVLSRSSGFYELTGVTEAYLPELDLFVGRFPLLDKRVFWDLLHDKNARKR 292
BLAST of mRNA_S-firma_F_contig1008.152.1 vs. uniprot
Match: D8LS48_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS48_ECTSI) HSP 1 Score: 405 bits (1041), Expect = 1.040e-135 Identity = 213/270 (78.89%), Postives = 228/270 (84.44%), Query Frame = 1 Query: 1 AVLVLLLSVL-HASAWLTP-----GLVRQG--SFVSQVATPEPATRTPVA------RRRQVLTCKLDRLPTRTLKRVVPLRPTTEKYLAFFGQTPFERRRKMINMLGGLFAFYWAAFFATRNVYILGPGGINAIAWRGSCLAVFLQTFLRPMVGSYNRALELWGAGSKEARRKTKGALFTGRVTRTGFALSPQASKHRSHFQMLVEDESGRELLFDVPPVPEYRQIQRGMQCAVVVLSRSSGFYELTGVTEAYLPELDLFVGRFPLLDKR 768
A+L LLLS H AW P GL+ G SFV+ TP T + RRRQV TCKLDRLP RTLKRVVPLRPT EKYLA FGQTP +RRRKM+N+LGGLFAFYWAAFFATRNVY+LGPGGINAIAWRGSCLAVFLQTFLRP+VGSYNRALELWGAGS+EARRKTKGALFTGRVT+TGFALS QAS HR+HFQMLVEDESGRELLFDVP VPEYR+I++GM CAVVVLSRSSGFYELTGVTEAYLPELDLFVGRFPLLDKR
Sbjct: 8 ALLALLLSFFQHTRAWTAPLPLSGGLIAPGQQSFVATPVTPSVTATTTRSSHDWRDRRRQVPTCKLDRLPVRTLKRVVPLRPTPEKYLAHFGQTPLDRRRKMVNVLGGLFAFYWAAFFATRNVYVLGPGGINAIAWRGSCLAVFLQTFLRPVVGSYNRALELWGAGSREARRKTKGALFTGRVTKTGFALSSQASNHRAHFQMLVEDESGRELLFDVPQVPEYRRIRKGMHCAVVVLSRSSGFYELTGVTEAYLPELDLFVGRFPLLDKR 277
BLAST of mRNA_S-firma_F_contig1008.152.1 vs. uniprot
Match: A0A835YT15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT15_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 2.200e-9 Identity = 53/189 (28.04%), Postives = 90/189 (47.62%), Query Frame = 1 Query: 247 ERRRKMINMLGGLFAFYWAAFFATRNVYILGPGGINAIAWRGSCLAVFLQTFLRPMVGSYNRALELWGAGSKEARRK-TKGALFTGRVTRTGFALSPQASKHRSHFQMLVEDESGRELLFDVPPVPEYRQIQRGMQCAVVVLSRS--SGFYELTGVTEAYLPELDLFVGRFPLLDKRVFWGLLKERNER 804
+R K+ F WA +F + + LG + I + L P + +Y + E G + + T+ ALF+ + ++P K ++ ++ V DE GR L+ VP V E +++ GM V+++S GF ++ GV++AY+P +DL+VG +P L+K LL ER R
Sbjct: 17 QRAGKVAESFSVAFLGVWACYFTS---FFLGVAITSVIG-----VVFVFYWLLGPNLLNYRKNWEFRGKLAPSPKEPGTRAALFSASIANVVEEVNPITGK-AANLRLEVADEEGRALMLRVPAVREAARVEAGMGIEVLLISDEPGGGFEDILGVSDAYIPAIDLWVGDYPHLNKLALRRLLNERYRR 196
BLAST of mRNA_S-firma_F_contig1008.152.1 vs. uniprot
Match: A0A5B8NL37_9CHRO (Phosphate ABC transporter permease n=1 Tax=Euhalothece natronophila Z-M001 TaxID=522448 RepID=A0A5B8NL37_9CHRO) HSP 1 Score: 57.0 bits (136), Expect = 1.770e-5 Identity = 62/248 (25.00%), Postives = 106/248 (42.74%), Query Frame = 1 Query: 181 KRVVPLRPTTEKYLAFFGQTPFERRRKMINMLG------------------GLFAF----YWA---AFFATR--NVYILGPGGINAIAWRGSCLAVFLQTFLRPMVGSYNRALELWGAGSKEARRKTKGALFTGRVTRTGFALSPQASKHRSHFQMLVEDESGRELLFDVPPVPEYRQIQRGMQCAVVVLSRSSGFYELTGVTEAYLPELDLFVGRFPLLDKRVFWGLLKERNERDRRGRSGAVTARR 843
++++PL T +Y + G P R+ +I+ LG LFAF YW ++ATR + Y P A WRG+ L F+ L + N EL ++E R + V D++G E+ P + +R I+ G ++ LS+ ++ VT+AY+P+LD++V +P+L + +F + +E + R RR R+ A ++RR
Sbjct: 11 EQLIPLTGTAAQYRYYAGSWPDFLRKLLISFLGVVVIWLLGEITNSGGATVSLFAFIAGLYWLWSPVYWATRRNSSYRRFP---YAGFWRGNVLEAFVSEELLGTEETVNEYGELVIVENRERR-----------------------------INLQVGDKNGFEIQIQAPLLRLHRNIKPGQVVELLALSKDPDLERISKVTDAYIPQLDIWVSNYPVLRRDIFVEVSEELSGR-RRKRTKASSSRR 225 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1008.152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1008.152.1 >prot_S-firma_F_contig1008.152.1 ID=prot_S-firma_F_contig1008.152.1|Name=mRNA_S-firma_F_contig1008.152.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=297bp MINMLGGLFAFYWAAFFATRNVYILGPGGINAIAWRGSCLAVFLQTFLRPback to top mRNA from alignment at S-firma_F_contig1008:3170..6762+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1008.152.1 ID=mRNA_S-firma_F_contig1008.152.1|Name=mRNA_S-firma_F_contig1008.152.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3593bp|location=Sequence derived from alignment at S-firma_F_contig1008:3170..6762+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1008:3170..6762+ >mRNA_S-firma_F_contig1008.152.1 ID=mRNA_S-firma_F_contig1008.152.1|Name=mRNA_S-firma_F_contig1008.152.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1782bp|location=Sequence derived from alignment at S-firma_F_contig1008:3170..6762+ (Sphaerotrichia firma ET2_F female)back to top |