mRNA_S-firma_F_contig10062.130.1 (mRNA) Sphaerotrichia firma ET2_F female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_S-firma_F_contig10062.130.1 vs. uniprot
Match: D7FN78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN78_ECTSI) HSP 1 Score: 150 bits (379), Expect = 3.560e-41 Identity = 80/110 (72.73%), Postives = 93/110 (84.55%), Query Frame = 1 Query: 1 AVKKTRSKERARKTEYKAGREIVSKMSKKDPARPKGPQSSYILFYTEKVASARAARPDMSITEIGTAVGEAWRGLSDEKRSPYTKRAEVDRRRYEGQLRTIARKAAAAAA 330 ++ K +ERARK EYKAGRE+VSKMS+KD ARPKGPQSSYI+FYTEK+AS +AARP MSIT+I TAVGEAWR LSDE + PYTK+AE DR+RYE QLR IAR AA +AA Sbjct: 328 SISKKLLEERARKAEYKAGRELVSKMSRKDSARPKGPQSSYIVFYTEKMASFKAARPGMSITDIATAVGEAWRRLSDEMKLPYTKKAEADRKRYEDQLRAIARSAATSAA 437
BLAST of mRNA_S-firma_F_contig10062.130.1 vs. uniprot
Match: G8Y0V1_PICSO (Piso0_004944 protein n=2 Tax=Pichia sorbitophila (strain ATCC MYA-4447 / BCRC 22081 / CBS 7064 / NBRC 10061 / NRRL Y-12695) TaxID=559304 RepID=G8Y0V1_PICSO) HSP 1 Score: 62.0 bits (149), Expect = 2.790e-10 Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 1 Query: 82 KKDPARPKGPQSSYILFYTEKVASARAARPDMSITEIGTAVGEAWRGLSDEKRSPYTKRAEVDRRRYEGQLRTIARK 312 KKDP PK S+Y+ F E RA P +S ++G +GE W+ +S E ++PY +AE D++RYE + A+K Sbjct: 13 KKDPDAPKRSLSAYMFFANENRDIVRAENPGISFGQVGKLLGEKWKAMSSEDKTPYETKAEADKKRYEKEKAEYAKK 89
BLAST of mRNA_S-firma_F_contig10062.130.1 vs. uniprot
Match: A0A642UMP5_DIURU (HMG box domain-containing protein n=1 Tax=Diutina rugosa TaxID=5481 RepID=A0A642UMP5_DIURU) HSP 1 Score: 60.5 bits (145), Expect = 1.090e-9 Identity = 29/79 (36.71%), Postives = 47/79 (59.49%), Query Frame = 1 Query: 82 KKDPARPKGPQSSYILFYTEKVASARAARPDMSITEIGTAVGEAWRGLSDEKRSPYTKRAEVDRRRYEGQLRTIARKAA 318 K+DP PK S+Y+ F E R+ P +S ++G +GE W+ L+ E+++PY +AE D++RYE + A+K A Sbjct: 13 KRDPDAPKRSLSAYMFFANENRDVVRSENPGVSFGQVGKLLGEKWKALTSEEKTPYEAKAEADKKRYEKEKAEYAKKQA 91
BLAST of mRNA_S-firma_F_contig10062.130.1 vs. uniprot
Match: A0A367Y0M0_9ASCO (Non-histone chromosomal protein 6 n=1 Tax=Candida viswanathii TaxID=5486 RepID=A0A367Y0M0_9ASCO) HSP 1 Score: 60.5 bits (145), Expect = 1.090e-9 Identity = 29/77 (37.66%), Postives = 45/77 (58.44%), Query Frame = 1 Query: 82 KKDPARPKGPQSSYILFYTEKVASARAARPDMSITEIGTAVGEAWRGLSDEKRSPYTKRAEVDRRRYEGQLRTIARK 312 KKDP PK S+Y+ F E RA P ++ ++G +GE W+ L+ E ++PY +AE D++RYE + A+K Sbjct: 13 KKDPDAPKRSLSAYMFFANENRDIVRAENPGITFGQVGKLLGEKWKALTPEDKTPYENKAEADKKRYEKEKSEYAKK 89
BLAST of mRNA_S-firma_F_contig10062.130.1 vs. uniprot
Match: A0A1E3QVM9_9ASCO (HMG box domain-containing protein n=1 Tax=Babjeviella inositovora NRRL Y-12698 TaxID=984486 RepID=A0A1E3QVM9_9ASCO) HSP 1 Score: 58.9 bits (141), Expect = 4.330e-9 Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 1 Query: 82 KKDPARPKGPQSSYILFYTEKVASARAARPDMSITEIGTAVGEAWRGLSDEKRSPYTKRAEVDRRRYEGQ 291 KKDP PK S+Y+ F E RA P ++ ++G +GE W+ L+ E ++PY ++AE D++RYE Q Sbjct: 10 KKDPNAPKRSLSAYMFFANENRDIVRAENPGVTFGQLGKLLGEKWKSLTPEDKTPYDQKAEKDKKRYEVQ 79
BLAST of mRNA_S-firma_F_contig10062.130.1 vs. uniprot
Match: A0A1I8AHZ8_9BILA (Uncharacterized protein n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I8AHZ8_9BILA) HSP 1 Score: 60.8 bits (146), Expect = 6.560e-9 Identity = 29/76 (38.16%), Postives = 46/76 (60.53%), Query Frame = 1 Query: 73 KMSKKDPARPKGPQSSYILFYTEKVASARAARPDMSITEIGTAVGEAWRGLSDEKRSPYTKRAEVDRRRYEGQLRT 300 K +KKDP PK S++ F +K + +A PD + ++ +G+ W+GLS+E RS Y K+A D+ RY ++RT Sbjct: 87 KRTKKDPNAPKRALSAFFFFSHDKRSEVQAKHPDWKVGQVAQELGKFWKGLSEEDRSIYEKKAAEDKERYAEEMRT 162
BLAST of mRNA_S-firma_F_contig10062.130.1 vs. uniprot
Match: NHP6_YARLI (Non-histone chromosomal protein 6 n=4 Tax=Yarrowia TaxID=4951 RepID=NHP6_YARLI) HSP 1 Score: 57.8 bits (138), Expect = 1.620e-8 Identity = 26/70 (37.14%), Postives = 44/70 (62.86%), Query Frame = 1 Query: 82 KKDPARPKGPQSSYILFYTEKVASARAARPDMSITEIGTAVGEAWRGLSDEKRSPYTKRAEVDRRRYEGQ 291 KKDP PK S+Y+ F + + RA P ++ ++G A+GE W+ L+D ++ PY ++A D++RYE + Sbjct: 19 KKDPNAPKRALSAYMFFANDNRDAIRADNPGIAFGQVGKALGEKWKTLTDAEKVPYEEKATADKKRYEDE 88
BLAST of mRNA_S-firma_F_contig10062.130.1 vs. uniprot
Match: A0A6G1G513_9PEZI (Nucleosome binding protein n=1 Tax=Eremomyces bilateralis CBS 781.70 TaxID=1392243 RepID=A0A6G1G513_9PEZI) HSP 1 Score: 57.8 bits (138), Expect = 1.700e-8 Identity = 26/70 (37.14%), Postives = 43/70 (61.43%), Query Frame = 1 Query: 82 KKDPARPKGPQSSYILFYTEKVASARAARPDMSITEIGTAVGEAWRGLSDEKRSPYTKRAEVDRRRYEGQ 291 KKDP PK S+Y+ F + R P + ++G A+GE W+ L+D+ ++PY +A+VD++RYE + Sbjct: 20 KKDPNAPKRGLSAYMFFANDNRDKVREDNPGIKFGDVGKALGEKWKELTDKDKAPYEAKAKVDKKRYEDE 89
BLAST of mRNA_S-firma_F_contig10062.130.1 vs. uniprot
Match: A0A1J1GM50_PLAGA (HMG box domain-containing protein n=27 Tax=Plasmodiidae TaxID=1639119 RepID=A0A1J1GM50_PLAGA) HSP 1 Score: 55.8 bits (133), Expect = 8.260e-8 Identity = 27/83 (32.53%), Postives = 49/83 (59.04%), Query Frame = 1 Query: 70 SKMSKKDPARPKGPQSSYILFYTEKVASARAARPDMS--ITEIGTAVGEAWRGLSDEKRSPYTKRAEVDRRRYEGQLRTIARK 312 +K KKDP PK S+Y+ + +K +P+++ + ++G +GEAW LS ++SPY K+A++D+ RY ++ +K Sbjct: 14 NKKKKKDPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGKLSAAQKSPYEKKAQLDKARYSKEIEEYRKK 96
BLAST of mRNA_S-firma_F_contig10062.130.1 vs. uniprot
Match: A0A1I8CM22_9BILA (Uncharacterized protein n=1 Tax=Rhabditophanes sp. KR3021 TaxID=114890 RepID=A0A1I8CM22_9BILA) HSP 1 Score: 57.8 bits (138), Expect = 9.840e-8 Identity = 29/83 (34.94%), Postives = 49/83 (59.04%), Query Frame = 1 Query: 73 KMSKKDPARPKGPQSSYILFYTEKVASARAARPDMSITEIGTAVGEAWRGLSDEKRSPYTKRAEVDRRRYEGQLRTIARKAAA 321 K +KKDP PK S++ F E+ + A D + ++ +G+ W+GLS+E+RS Y KRA D+ RY ++++ +A+A Sbjct: 87 KRAKKDPNAPKRALSAFFFFSNERRPEVQRAHTDWKVGQVAQELGKFWKGLSEEERSIYEKRASDDKERYAEEMKSFRGEASA 169 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10062.130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10062.130.1 >prot_S-firma_F_contig10062.130.1 ID=prot_S-firma_F_contig10062.130.1|Name=mRNA_S-firma_F_contig10062.130.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=116bp AVKKTRSKERARKTEYKAGREIVSKMSKKDPARPKGPQSSYILFYTEKVAback to top mRNA from alignment at S-firma_F_contig10062:13..980+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10062.130.1 ID=mRNA_S-firma_F_contig10062.130.1|Name=mRNA_S-firma_F_contig10062.130.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=968bp|location=Sequence derived from alignment at S-firma_F_contig10062:13..980+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10062:13..980+ >mRNA_S-firma_F_contig10062.130.1 ID=mRNA_S-firma_F_contig10062.130.1|Name=mRNA_S-firma_F_contig10062.130.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=696bp|location=Sequence derived from alignment at S-firma_F_contig10062:13..980+ (Sphaerotrichia firma ET2_F female)back to top |