mRNA_S-firma_F_contig10061.128.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10061.128.1
Unique NamemRNA_S-firma_F_contig10061.128.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10061.128.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 2.070e-52
Identity = 101/161 (62.73%), Postives = 115/161 (71.43%), Query Frame = 2 
Query:    2 QVVYFQPLWLEVIDFLWEGVLGTAVWGGSAESDHAATTAAPAPEKRAPVVQGGDEPTARPAAAAGQ----GSGGGADGVRSLSRISVALSAPTIVVPGGGFKPLTDPRHLALRPESFRFDTWTGGADDTSVPPRLEQCSPAGPVARHMAVEATQTDIDLGY 472
            QVVYFQPLWLEVIDFLWEGVLG AVWGGSA  +  A       E+ AP    G  P  R    A +     + GG  G+RSLS+I V LSAPT+V+PG     LTDPRHLALRP++FRF TWTGGADD+S PPRLE+CSP GPVARHMAVEA +TDI LG+
Sbjct: 3057 QVVYFQPLWLEVIDFLWEGVLGAAVWGGSAVPEEEA-------EQGAPAATDGSTPADRRTPGAREQERAAADGGDPGLRSLSQIQVTLSAPTVVLPGS----LTDPRHLALRPKTFRFSTWTGGADDSSAPPRLEECSPGGPVARHMAVEAGETDIGLGF 3206
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BLAST of mRNA_S-firma_F_contig10061.128.1 vs. uniprot
Match: A0A6H5JYL2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL2_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 8.510e-51
Identity = 98/156 (62.82%), Postives = 110/156 (70.51%), Query Frame = 2 
Query:    2 QVVYFQPLWLEVIDFLWEGVLGTAVWGGSAESDHAATTAAPAPEKRAPVVQGGDEPTARPAAAAGQGSGGGADGVRSLSRISVALSAPTIVVPGGGFKPLTDPRHLALRPESFRFDTWTGGADDTSVPPRLEQCSPAGPVARHMAVEATQTDIDLG 469
            QVVYFQPLWLEVIDFLWEGVLG AVWGGSA S+  A       E+ AP   G  +P                 G+RSLS+I V LSAPT+V+PG     LTDPRHLALRP+ FRF+TWTGGADD+S PPRLE+CSP GPVARHMAVEA +TDI LG
Sbjct: 2378 QVVYFQPLWLEVIDFLWEGVLGAAVWGGSAVSEKEA-------EQGAPAATGRGDP-----------------GLRSLSQIQVTLSAPTVVLPGS----LTDPRHLALRPKKFRFNTWTGGADDSSAPPRLEECSPGGPVARHMAVEAGETDIGLG 2505
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BLAST of mRNA_S-firma_F_contig10061.128.1 vs. uniprot
Match: A0A836C849_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C849_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 4.620e-6
Identity = 37/118 (31.36%), Postives = 49/118 (41.53%), Query Frame = 2 
Query:    2 QVVYFQPLWLEVIDFLWEGVLGTAVWGGSAESDHAATTAAPAPEKRAPVVQGGDEPTARPAAAAGQGSGGGADGVRSLSRISVALSAPTIVVPGGGFKPLTDPRHLALRPESFRFDTW 355
            Q VY QPLWLEV+D+++EGVL  A+WG     D  +T +              D    R  A    G             +   L AP +V+P         P HL+ R +  RF TW
Sbjct: 2429 QWVYIQPLWLEVVDYIFEGVLAGAIWGTPMAPDGVSTLS--------------DWVRRRGGAVDADGXXXXXXXXXXXMAVEAVLEAPVVVLPHA----YASPAHLSARLDELRFSTW 2528
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10061.128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMF5_ECTSI2.070e-5262.73FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JYL2_9PHAE8.510e-5162.82FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A836C849_9STRA4.620e-631.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10061contigS-firma_F_contig10061:494..2123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size479
Cds size477
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10061.128.1prot_S-firma_F_contig10061.128.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10061 494..2121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815530.9248877-CDS-S-firma_F_contig10061:493..5911622815530.9248877-CDS-S-firma_F_contig10061:493..591Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10061 494..591 +
1696949393.2386038-CDS-S-firma_F_contig10061:493..5911696949393.2386038-CDS-S-firma_F_contig10061:493..591Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10061 494..591 +
1622815530.940474-CDS-S-firma_F_contig10061:818..10951622815530.940474-CDS-S-firma_F_contig10061:818..1095Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10061 819..1095 +
1696949393.2520654-CDS-S-firma_F_contig10061:818..10951696949393.2520654-CDS-S-firma_F_contig10061:818..1095Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10061 819..1095 +
1622815530.9508367-CDS-S-firma_F_contig10061:2019..21211622815530.9508367-CDS-S-firma_F_contig10061:2019..2121Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10061 2020..2121 +
1696949393.2634382-CDS-S-firma_F_contig10061:2019..21211696949393.2634382-CDS-S-firma_F_contig10061:2019..2121Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10061 2020..2121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10061.128.1

>prot_S-firma_F_contig10061.128.1 ID=prot_S-firma_F_contig10061.128.1|Name=mRNA_S-firma_F_contig10061.128.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=159bp
AGGLLPAAVARGDRLLVGGRPRHGRVGGLRRIRPCRYHRRPRPREEGAGS
PRRGRTNGTAGGGGGTGERGRCRRCAKPVADQRSAVGADDRRPRRRLQAA
HGPPAPGAEARVFPLRHLDRRRGRHERPTATRAVLPGGPGGSPHGRRGHP
NRHRPGVLV
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mRNA from alignment at S-firma_F_contig10061:494..2123+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10061.128.1 ID=mRNA_S-firma_F_contig10061.128.1|Name=mRNA_S-firma_F_contig10061.128.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1630bp|location=Sequence derived from alignment at S-firma_F_contig10061:494..2123+ (Sphaerotrichia firma ET2_F female)
GCAGGTGGTTTACTTCCAGCCGCTGTGGCTCGAGGTGATCGACTTCTTGT
GGGAGGGCGTCCTCGGCACGGCCGTGTGGGGGGGCTCCGCAGAATCCGGT
GAGTTAGATGTTTTTTTTTTTTTTTTGGCCAATGAACAACCGCAGGAAGG
TGTTCGACTGGCCAACAAAAACTCCCCTTTCTTCCCCCGGGGCTGTCTGT
CCCTTTTCCGCGCCGCTGTTTCATGCCTGATGACCACGTTCCATCTTGTT
GTTGTTTTTGTTGCTGTTGTTGTTCTTCTTCTTCTTGTTGCTGTTCTTGT
TCTTATTCTTGTTGTTCCCGGGCAGACCATGCCGCTACCACCGCCGCCCC
CGCCCCCGAGAAGAGGGCGCCGGTAGTCCAAGGCGGGGACGAACCAACGG
CACGGCCGGCGGCGGCGGCGGGACAGGGGAGCGGGGGCGGTGCAGACGGT
GTGCGAAGCCTGTCGCGGATCAGCGTAGCGCTGTCGGCGCCGACGATCGT
CGTCCCCGGCGGCGGCTTCAAGCCGCTCACGGACCCCCGGCACCTGGCGC
TGAGGCCCGAGTCTTTCCGCTTCGACACTTGGACCGGCGGCGCGGACGAC
ACGTGAGTGTATTGTAGTGTGCCTGCCCTCGGCGGTATGTGGGCTGCCAG
GATTGATACTTCTGGTAGCCATGGTATTCTGAGCTCCAGGTTGAGCAGGA
TCCGCTGGTGCAGTAACTGGACAAGGGACCGTCGAGAGGATGGGATCAGT
TCACCAAGTTCGGCGATATTCATCAAAGGGTATACATCGCGAAATTGGTC
AACAGACTTTCCTTGGACAGACGGGTCATACCTTGGCGCAGACACAGACT
GTACATTTAGGAAGATGGACACGTGCTGCATGCTGCGGTGAAGAGGCTAG
ATTTGCGCACGAGCTTTTATGGTGGAGAGGGTGCTTGCCCTCAGCAGAAT
TAAATTAGGGGGAAGATGGGCATGTGCTGCGATGAAAGCAGATTTTGCGC
GCTTTAGTGTGAAGGGTGATCTAGGCAGAACCAGGGAAAGGTAAGCAGCC
ATGTGTCGGGATGAAAACATATTGCGCGCTTGCTGGTGCGTGCTCACGGC
AGCAGACCAGAGGGAAAAAAACTAGCGATGACGAGCAAAGCTTCACAGGC
GCCGTTTCAGCCCGAAAGACTGGCCCGTGTGCTCACGGAAGACCAGGGGA
AAGATCGGTTTCACAGGCGAATGATGTGCAGCGACGAAAGCGAAGCTTCG
AATGTGCAAGAAAGCCGTCGCGTGCGGCCACCAAAGATTCCCAGAGACGG
TAGCCCTGGATCTGGGGGGAAGGCGACGAGCGAGTCGTCCTCAGAACAGA
GTATCGCTCACCGGGAGAGCAGCACTCCCTTTTTCCAGTCCGCTCGAGGT
GGTAAACACGCTTCTACATTCGTCAGCCGTATACGTCCGTCCTGTGAATA
CGTCGTTCCAGGGGGCCTGACCGTTGTCTACACACTAACCCTCCCCGCCC
CATCTTTTGTGCACTATTTGCTGCAGGAGCGTCCCACCGCGACTCGAGCA
GTGCTCCCCGGCGGGCCCGGTGGCTCGCCACATGGCCGTCGAGGCCACCC
AAACCGACATCGACCTGGGGTACTTGTGCG
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Coding sequence (CDS) from alignment at S-firma_F_contig10061:494..2123+

>mRNA_S-firma_F_contig10061.128.1 ID=mRNA_S-firma_F_contig10061.128.1|Name=mRNA_S-firma_F_contig10061.128.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=954bp|location=Sequence derived from alignment at S-firma_F_contig10061:494..2123+ (Sphaerotrichia firma ET2_F female)
GCAGGTGGTTTACTTCCAGCCGCTGTGGCTCGAGGTGATCGACTTCTTGT
GGGAGGGCGTCCTCGGCACGGCCGTGTGGGGGGGCTCCGCAGAATCCGGC
AGGTGGTTTACTTCCAGCCGCTGTGGCTCGAGGTGATCGACTTCTTGTGG
GAGGGCGTCCTCGGCACGGCCGTGTGGGGGGGCTCCGCAGAATCCGACCA
TGCCGCTACCACCGCCGCCCCCGCCCCCGAGAAGAGGGCGCCGGTAGTCC
AAGGCGGGGACGAACCAACGGCACGGCCGGCGGCGGCGGCGGGACAGGGG
AGCGGGGGCGGTGCAGACGGTGTGCGAAGCCTGTCGCGGATCAGCGTAGC
GCTGTCGGCGCCGACGATCGTCGTCCCCGGCGGCGGCTTCAAGCCGCTCA
CGGACCCCCGGCACCTGGCGCTGAGGCCCGAGTCTTTCCGCTTCGACACT
TGGACCGGCGGCGCGGACGACACACCATGCCGCTACCACCGCCGCCCCCG
CCCCCGAGAAGAGGGCGCCGGTAGTCCAAGGCGGGGACGAACCAACGGCA
CGGCCGGCGGCGGCGGCGGGACAGGGGAGCGGGGGCGGTGCAGACGGTGT
GCGAAGCCTGTCGCGGATCAGCGTAGCGCTGTCGGCGCCGACGATCGTCG
TCCCCGGCGGCGGCTTCAAGCCGCTCACGGACCCCCGGCACCTGGCGCTG
AGGCCCGAGTCTTTCCGCTTCGACACTTGGACCGGCGGCGCGGACGACAC
GAGCGTCCCACCGCGACTCGAGCAGTGCTCCCCGGCGGGCCCGGTGGCTC
GCCACATGGCCGTCGAGGCCACCCAAACCGACATCGACCTGGGGTACTTG
TGGAGCGTCCCACCGCGACTCGAGCAGTGCTCCCCGGCGGGCCCGGTGGC
TCGCCACATGGCCGTCGAGGCCACCCAAACCGACATCGACCTGGGGTACT
TGTG
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