mRNA_S-firma_F_contig10061.128.1 (mRNA) Sphaerotrichia firma ET2_F female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10061.128.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI) HSP 1 Score: 188 bits (478), Expect = 2.070e-52 Identity = 101/161 (62.73%), Postives = 115/161 (71.43%), Query Frame = 2 Query: 2 QVVYFQPLWLEVIDFLWEGVLGTAVWGGSAESDHAATTAAPAPEKRAPVVQGGDEPTARPAAAAGQ----GSGGGADGVRSLSRISVALSAPTIVVPGGGFKPLTDPRHLALRPESFRFDTWTGGADDTSVPPRLEQCSPAGPVARHMAVEATQTDIDLGY 472
QVVYFQPLWLEVIDFLWEGVLG AVWGGSA + A E+ AP G P R A + + GG G+RSLS+I V LSAPT+V+PG LTDPRHLALRP++FRF TWTGGADD+S PPRLE+CSP GPVARHMAVEA +TDI LG+
Sbjct: 3057 QVVYFQPLWLEVIDFLWEGVLGAAVWGGSAVPEEEA-------EQGAPAATDGSTPADRRTPGAREQERAAADGGDPGLRSLSQIQVTLSAPTVVLPGS----LTDPRHLALRPKTFRFSTWTGGADDSSAPPRLEECSPGGPVARHMAVEAGETDIGLGF 3206
BLAST of mRNA_S-firma_F_contig10061.128.1 vs. uniprot
Match: A0A6H5JYL2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL2_9PHAE) HSP 1 Score: 184 bits (466), Expect = 8.510e-51 Identity = 98/156 (62.82%), Postives = 110/156 (70.51%), Query Frame = 2 Query: 2 QVVYFQPLWLEVIDFLWEGVLGTAVWGGSAESDHAATTAAPAPEKRAPVVQGGDEPTARPAAAAGQGSGGGADGVRSLSRISVALSAPTIVVPGGGFKPLTDPRHLALRPESFRFDTWTGGADDTSVPPRLEQCSPAGPVARHMAVEATQTDIDLG 469
QVVYFQPLWLEVIDFLWEGVLG AVWGGSA S+ A E+ AP G +P G+RSLS+I V LSAPT+V+PG LTDPRHLALRP+ FRF+TWTGGADD+S PPRLE+CSP GPVARHMAVEA +TDI LG
Sbjct: 2378 QVVYFQPLWLEVIDFLWEGVLGAAVWGGSAVSEKEA-------EQGAPAATGRGDP-----------------GLRSLSQIQVTLSAPTVVLPGS----LTDPRHLALRPKKFRFNTWTGGADDSSAPPRLEECSPGGPVARHMAVEAGETDIGLG 2505
BLAST of mRNA_S-firma_F_contig10061.128.1 vs. uniprot
Match: A0A836C849_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C849_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 4.620e-6 Identity = 37/118 (31.36%), Postives = 49/118 (41.53%), Query Frame = 2 Query: 2 QVVYFQPLWLEVIDFLWEGVLGTAVWGGSAESDHAATTAAPAPEKRAPVVQGGDEPTARPAAAAGQGSGGGADGVRSLSRISVALSAPTIVVPGGGFKPLTDPRHLALRPESFRFDTW 355
Q VY QPLWLEV+D+++EGVL A+WG D +T + D R A G + L AP +V+P P HL+ R + RF TW
Sbjct: 2429 QWVYIQPLWLEVVDYIFEGVLAGAIWGTPMAPDGVSTLS--------------DWVRRRGGAVDADGXXXXXXXXXXXMAVEAVLEAPVVVLPHA----YASPAHLSARLDELRFSTW 2528 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10061.128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10061.128.1 >prot_S-firma_F_contig10061.128.1 ID=prot_S-firma_F_contig10061.128.1|Name=mRNA_S-firma_F_contig10061.128.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=159bp AGGLLPAAVARGDRLLVGGRPRHGRVGGLRRIRPCRYHRRPRPREEGAGSback to top mRNA from alignment at S-firma_F_contig10061:494..2123+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10061.128.1 ID=mRNA_S-firma_F_contig10061.128.1|Name=mRNA_S-firma_F_contig10061.128.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1630bp|location=Sequence derived from alignment at S-firma_F_contig10061:494..2123+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10061:494..2123+ >mRNA_S-firma_F_contig10061.128.1 ID=mRNA_S-firma_F_contig10061.128.1|Name=mRNA_S-firma_F_contig10061.128.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=954bp|location=Sequence derived from alignment at S-firma_F_contig10061:494..2123+ (Sphaerotrichia firma ET2_F female)back to top |