mRNA_S-firma_F_contig10053.117.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10053.117.1
Unique NamemRNA_S-firma_F_contig10053.117.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10053.117.1 vs. uniprot
Match: A0A6H5LFU5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LFU5_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 3.290e-5
Identity = 20/24 (83.33%), Postives = 23/24 (95.83%), Query Frame = -1 
Query:    7 QMLHLWLHLKSDNWARWREVQDQR 78
            +MLHLWLHLKSDNW RWRE+QD+R
Sbjct: 1056 EMLHLWLHLKSDNWVRWREMQDRR 1079
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BLAST of mRNA_S-firma_F_contig10053.117.1 vs. uniprot
Match: D8LHA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA8_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 4.410e-5
Identity = 20/24 (83.33%), Postives = 22/24 (91.67%), Query Frame = -1 
Query:    7 QMLHLWLHLKSDNWARWREVQDQR 78
            +MLHLWLHLKSDNW RWRE QD+R
Sbjct: 1032 EMLHLWLHLKSDNWVRWRETQDRR 1055
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10053.117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LFU5_9PHAE3.290e-583.33Reverse transcriptase domain-containing protein n=... [more]
D8LHA8_ECTSI4.410e-583.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10053contigS-firma_F_contig10053:2354..2809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size458
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815529.6485384-CDS-S-firma_F_contig10053:2353..26861622815529.6485384-CDS-S-firma_F_contig10053:2353..2686Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10053 2354..2686 +
1696949392.1161358-CDS-S-firma_F_contig10053:2353..26861696949392.1161358-CDS-S-firma_F_contig10053:2353..2686Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10053 2354..2686 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815529.6616402-UTR-S-firma_F_contig10053:2686..28091622815529.6616402-UTR-S-firma_F_contig10053:2686..2809Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10053 2687..2809 +
1696949392.1264498-UTR-S-firma_F_contig10053:2686..28091696949392.1264498-UTR-S-firma_F_contig10053:2686..2809Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10053 2687..2809 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10053.117.1prot_S-firma_F_contig10053.117.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10053 2354..2686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10053.117.1

>prot_S-firma_F_contig10053.117.1 ID=prot_S-firma_F_contig10053.117.1|Name=mRNA_S-firma_F_contig10053.117.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=111bp
YIPLVLDLAPPGPVVALQVQPQVEHLLFFRVVQVEQRWVRPVAHVRSVAV
VGECHAEARRKNKSGFVFLCSGCEWQTASHSQKHRPLQQSPTRRQKTRDG
HKNKSELCAR*
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mRNA from alignment at S-firma_F_contig10053:2354..2809+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10053.117.1 ID=mRNA_S-firma_F_contig10053.117.1|Name=mRNA_S-firma_F_contig10053.117.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=456bp|location=Sequence derived from alignment at S-firma_F_contig10053:2354..2809+ (Sphaerotrichia firma ET2_F female)
TACATCCCGTTGGTCTTGGACCTCGCGCCACCGGGCCCAGTTGTCGCTCT
TCAGGTGCAGCCACAGGTGGAGCATCTGTTGTTTTTTCGGGTGGTCCAGG
TCGAGCAACGGTGGGTCAGGCCGGTCGCGCACGTGAGGTCAGTGGCGGTT
GTTGGCGAATGCCATGCGGAAGCAAGAAGAAAAAACAAGAGCGGTTTCGT
GTTTCTATGTTCTGGGTGTGAATGGCAAACAGCATCCCACAGCCAGAAGC
ATCGCCCCCTACAACAAAGCCCAACGCGGAGGCAGAAAACCAGAGACGGT
CACAAAAACAAAAGCGAACTCTGTGCAAGGTAGTACCTCTTCTTGGGTCC
GGTAACCTGTGACCACGGGCACCGGCTCCCACCAACGTGAACTGGGTAAA
ATTTGAACACTTTCCAACGCCCACGGAACAAACCACAACAACAGAATCCT
GAACAA
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Coding sequence (CDS) from alignment at S-firma_F_contig10053:2354..2809+

>mRNA_S-firma_F_contig10053.117.1 ID=mRNA_S-firma_F_contig10053.117.1|Name=mRNA_S-firma_F_contig10053.117.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=666bp|location=Sequence derived from alignment at S-firma_F_contig10053:2354..2809+ (Sphaerotrichia firma ET2_F female)
TACATCCCGTTGGTCTTGGACCTCGCGCCACCGGGCCCAGTTGTCGCTCT
TCAGGTGCAGCCACAGGTGGAGCATCTGTTGTTTTTTCGGGTGGTCCAGG
TCGAGCAACGGTGGGTCAGGCCGGTCGCGCACGTGAGGTCAGTGGCGGTT
GTTGGCGAATGCCATGCGGAAGCAAGAAGAAAAAACAAGAGCGGTTTCGT
GTTTCTATGTTCTGGGTGTGAATGGCAAACAGCATCCCACAGCCAGAAGC
ATCGCCCCCTACAACAAAGCCCAACGCGGAGGCAGAAAACCAGAGACGGT
CACAAAAACAAAAGCGAACTCTGTGCAAGGTAGTACATCCCGTTGGTCTT
GGACCTCGCGCCACCGGGCCCAGTTGTCGCTCTTCAGGTGCAGCCACAGG
TGGAGCATCTGTTGTTTTTTCGGGTGGTCCAGGTCGAGCAACGGTGGGTC
AGGCCGGTCGCGCACGTGAGGTCAGTGGCGGTTGTTGGCGAATGCCATGC
GGAAGCAAGAAGAAAAAACAAGAGCGGTTTCGTGTTTCTATGTTCTGGGT
GTGAATGGCAAACAGCATCCCACAGCCAGAAGCATCGCCCCCTACAACAA
AGCCCAACGCGGAGGCAGAAAACCAGAGACGGTCACAAAAACAAAAGCGA
ACTCTGTGCAAGGTAG
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