mRNA_S-firma_F_contig10033.98.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10033.98.1
Unique NamemRNA_S-firma_F_contig10033.98.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10033.98.1 vs. uniprot
Match: A0A7X6HRW5_9CYAN (Glycosyltransferase n=1 Tax=Microcoleus sp. SU_5_6 TaxID=2720483 RepID=A0A7X6HRW5_9CYAN)

HSP 1 Score: 241 bits (615), Expect = 6.110e-73
Identity = 132/261 (50.57%), Postives = 176/261 (67.43%), Query Frame = 1
Query:   13 LYAGSLWNAEVLQAAGL-DVEVLHQGVDTALFRPMPPAKPTGSEDLFFVFSGGKLEYRKGQDMVIAAFKRFRARHPEAHLLAAWNNLWPHTAASIARSRHTTGTPLV--DGKLEVEAWLLANGLERESFTLVRAAHERMP-EVLAMADAALLPSRCEGGTNLVAMETLAMGLPTILSANSGHLDLLASLGDNVYPLLKQTRSLGLANV----GWRDSDVSEMVARLEDVYGNREVARVKGLAAAAIMDRDWTWPRQMAKLL 771
            + AGS WNA+VL++ GL ++ +++QG+D A+F P P +   G  D F +FSGGKLEYRKGQD+V+AAFKRFRA+HP+A LL AW+N WP     I ++ +  G P +  DG L + AWL ANGL  +SF  +      +  ++L  ADAA+  +RCEGGTNLVAME++A G+PTILSAN+GHLDL+ +     YPLL Q R    A+     GW +SDV E+V  LE VY NRE A+ +GLAAA  M  DWTW +Q+ + L
Sbjct:  288 IVAGSNWNADVLKSCGLTNIRMVNQGIDPAIFHPAPKSNLLG--DRFVIFSGGKLEYRKGQDIVVAAFKRFRAKHPDALLLTAWHNFWPQYMLGIEQTGNAIGLPNINRDGSLGISAWLAANGLPVDSFIDIGLIPNHLAGQILREADAAVFTNRCEGGTNLVAMESMACGIPTILSANTGHLDLIYN--HICYPLLSQGRVKPTAHFPGIEGWGESDVDEVVEALEQVYTNREEAKRRGLAAANFM-LDWTWEKQVKRFL 543          
BLAST of mRNA_S-firma_F_contig10033.98.1 vs. uniprot
Match: A0A2D6D0I8_9BACT (Uncharacterized protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A2D6D0I8_9BACT)

HSP 1 Score: 224 bits (571), Expect = 5.790e-69
Identity = 127/264 (48.11%), Postives = 163/264 (61.74%), Query Frame = 1
Query:    7 DGLYAGSLWNAEVLQAAGL-DVEVLHQGVDTALFRPMPPAKPTGSEDLFFVFSGGKLEYRKGQDMVIAAFKRFRARHPEAHLLAAWNNLWP-HTAASIARSRHTTGTPLVD--GKLEVEAWLLANGLERESFTLVRAAHERMP-EVLAMADAALLPSRCEGGTNLVAMETLAMGLPTILSANSGHLDLLASLGDNVYPLLKQTR----SLGLANVGWRDSDVSEMVARLEDVYGNREVARVKGLAAAAIMDRDWTWPRQMAKLL 771
            D + AGS WN +VL A G+ +V+ +HQGVD A+F P P        D + VFSGGKLEYRKGQD+V+AAFK F ARHP+A L  AW N++P  T +S+ R  H  G P VD  G L++  WL  NGL   SF  + +    M  ++L   D A+ P+RCEGGTNLVAME +A G+P ILSAN+GHLDL+    D+ + L  Q+     SL +   GW +SDV E+V RLE  Y +R  A   G A A  M RDWTW  Q  +L+
Sbjct:   53 DAIIAGSTWNRQVLDAHGIANVQSVHQGVDPAIFHPAPSVGVGPFRDRYVVFSGGKLEYRKGQDIVVAAFKAFHARHPDALLAVAWQNIYPPETLSSLERRGHVEGAPSVDERGFLDISEWLHRNGLPEGSFLDLGSFSNHMAGQILREVDVAVFPNRCEGGTNLVAMECMACGVPAILSANTGHLDLIGE--DHCFALNSQSAVEPPSLAVGVDGWGESDVEEIVDRLESAYADRAEAERVGQAGAEFM-RDWTWKLQAGRLV 313          
BLAST of mRNA_S-firma_F_contig10033.98.1 vs. uniprot
Match: A0A2T1EWN3_9CYAN (Uncharacterized protein (Fragment) n=1 Tax=filamentous cyanobacterium Phorm 46 TaxID=2107705 RepID=A0A2T1EWN3_9CYAN)

HSP 1 Score: 236 bits (602), Expect = 6.580e-69
Identity = 129/261 (49.43%), Postives = 173/261 (66.28%), Query Frame = 1
Query:   13 LYAGSLWNAEVLQAAGL-DVEVLHQGVDTALFRPMPPAKPTGSEDLFFVFSGGKLEYRKGQDMVIAAFKRFRARHPEAHLLAAWNNLWPHTAASIARSRHTTGTPLV--DGKLEVEAWLLANGLERESFTLVRAAHERMP-EVLAMADAALLPSRCEGGTNLVAMETLAMGLPTILSANSGHLDLLASLGDNVYPLLKQTRSLGLANV----GWRDSDVSEMVARLEDVYGNREVARVKGLAAAAIMDRDWTWPRQMAKLL 771
            + AGS WNA+VL++ GL +V +++QG+D  +F P P +   G  D F +FSGGKLEYRKGQD+VIAAFKRF  +HPEA LL  W+N WP     I ++ +  G P +  DG L +  WL ANGL  +SF  +      +  ++L  ADAA+  +RCEGGTNLVAME++A G+PTILSAN+GHLDL+ S  +  YPL  Q R    A+     GW +SDV E+V  LE +Y NREVA+ +GLAAA +M  DWTW +Q+ + +
Sbjct:  552 IVAGSNWNADVLRSCGLTNVAMVNQGIDPTIFHPAPKSNLFG--DRFVIFSGGKLEYRKGQDIVIAAFKRFHTKHPEALLLTTWHNFWPQYMLGIEQTGNVAGLPNINRDGSLGISQWLAANGLPIDSFIDIGLIPNHLAGQILREADAAVFTNRCEGGTNLVAMESMACGIPTILSANTGHLDLIYS--NICYPLSHQGRVKPTAHFAGVEGWGESDVDEVVQALEQIYTNREVAKTRGLAAANLM-LDWTWEKQVNRFI 807          
BLAST of mRNA_S-firma_F_contig10033.98.1 vs. uniprot
Match: K9VL67_9CYAN (Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY n=1 Tax=Oscillatoria nigro-viridis PCC 7112 TaxID=179408 RepID=K9VL67_9CYAN)

HSP 1 Score: 240 bits (612), Expect = 8.700e-69
Identity = 133/261 (50.96%), Postives = 176/261 (67.43%), Query Frame = 1
Query:   13 LYAGSLWNAEVLQAAGL-DVEVLHQGVDTALFRPMPPAKPTGSEDLFFVFSGGKLEYRKGQDMVIAAFKRFRARHPEAHLLAAWNNLWPHTAASIARSRHTTGTPLV--DGKLEVEAWLLANGLERESFTLVRAAHERMP-EVLAMADAALLPSRCEGGTNLVAMETLAMGLPTILSANSGHLDLLASLGDNVYPLLKQTR---SLGLANV-GWRDSDVSEMVARLEDVYGNREVARVKGLAAAAIMDRDWTWPRQMAKLL 771
            + AGS WNA+VL++ GL +V ++HQG+D  +F P P +   G  D F +FSGGKLEYRKGQD+VIAAFKRFRA+HPEA LL  W+N WP     I ++ +  G P +  DG LE+  WL+ANGL  +SF  +      +  ++L  AD A+  +RCEGGTNLVAME++A G+PTILSAN+GHLDL+ S  +  YPL  Q R   +   + V GW +SDV+E+V  LE VY NRE ++  GLAAA  M RDWTW +Q+ + L
Sbjct: 3020 IVAGSNWNADVLRSCGLTNVAMVHQGIDPTIFHPAPKSNLFG--DRFVIFSGGKLEYRKGQDIVIAAFKRFRAKHPEALLLTTWHNFWPQYMLGIEQTGNVVGLPNINRDGSLEISQWLVANGLPVDSFIDIGLIPNHLTGQILREADCAVFTNRCEGGTNLVAMESMACGIPTILSANTGHLDLIYS--NICYPLWSQGRVKLTAPFSGVEGWGESDVAEVVEALEQVYTNREESKRIGLAAANFM-RDWTWEKQVKRFL 3275          
BLAST of mRNA_S-firma_F_contig10033.98.1 vs. uniprot
Match: UPI0019BEFC17 (Glycosyltransferase family 4 protein n=1 Tax=Leptolyngbyaceae cyanobacterium LF-bin-113 TaxID=2804780 RepID=UPI0019BEFC17)

HSP 1 Score: 227 bits (579), Expect = 1.940e-68
Identity = 127/263 (48.29%), Postives = 172/263 (65.40%), Query Frame = 1
Query:    7 DGLYAGSLWNAEVLQAAGL-DVEVLHQGVDTALFRPMPPAKPTGSEDLFFVFSGGKLEYRKGQDMVIAAFKRFRARHPEAHLLAAWNNLWPHTAASIARSRHTTGTPLVD--GKLEVEAWLLANGLERESFTLV-RAAHERMPEVLAMADAALLPSRCEGGTNLVAMETLAMGLPTILSANSGHLDLLASLGDNVYPLLKQTRSLGLANV----GWRDSDVSEMVARLEDVYGNREVARVKGLAAAAIMDRDWTWPRQMAKLL 771
            D + AGS WNAE+L++ GL  VE + QG+D  LF P   +K     D F +FSGGKLE+RKGQD+V+AAF+ FR+RHPEA LL AW+N W HT   + R++H  G P VD  G+L++  WL  NG+  ++   V R  +   P++L  AD A+ P+R EGGTNLVAME+LA G+PTILSAN+GHLDL+    D  YPL  Q + +   +     GW +SDV E+V +LE VY +R  A+ +G AAA  M ++WTW  Q+ + L
Sbjct:  201 DRIIAGSDWNAEILRSYGLTQVETVQQGIDPTLFHPA--SKSGLLHDRFVIFSGGKLEHRKGQDIVVAAFRIFRSRHPEALLLMAWHNHWLHTMTGLDRAKHVIGLPTVDARGQLQITRWLTKNGIPADAVLDVGRIPNAIAPQILREADVAVFPNRAEGGTNLVAMESLACGIPTILSANTGHLDLIQP--DRCYPLRTQRQVVRSEHYHGTEGWGESDVEEVVEQLEQVYRDRSEAQRRGTAAAQFM-QNWTWEIQVQRCL 458          
BLAST of mRNA_S-firma_F_contig10033.98.1 vs. uniprot
Match: A0A355CII8_9CYAN (Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY (Fragment) n=2 Tax=unclassified Microcoleaceae TaxID=2053578 RepID=A0A355CII8_9CYAN)

HSP 1 Score: 238 bits (608), Expect = 2.900e-68
Identity = 129/261 (49.43%), Postives = 175/261 (67.05%), Query Frame = 1
Query:   13 LYAGSLWNAEVLQAAGL-DVEVLHQGVDTALFRPMPPAKPTGSEDLFFVFSGGKLEYRKGQDMVIAAFKRFRARHPEAHLLAAWNNLWPHTAASIARSRHTTGTPLV--DGKLEVEAWLLANGLERESFTLVRAAHERMP-EVLAMADAALLPSRCEGGTNLVAMETLAMGLPTILSANSGHLDLLASLGDNVYPLLKQTRSLGLANV----GWRDSDVSEMVARLEDVYGNREVARVKGLAAAAIMDRDWTWPRQMAKLL 771
            + AGS WNA+VL++ GL +V +++QG+D A+F P P +   G  D F +FSGGKLEYRKGQD+++AAFK+F+ +HPEA LL  W+N WP     I +  +  G P +  DG L +  WL ANGL  ESF  +      +  ++L  ADAA+  +RCEGGTNLVAME++A G+PTILSAN+GHLDL+ S  +N YPLL Q R    A+     GW +SDV+E++  LE +Y NRE A+ +GLAAA  M  DWTW +Q+ + L
Sbjct: 1866 IVAGSNWNADVLRSYGLTNVAMVNQGIDPAIFHPAPKSNLFG--DRFVIFSGGKLEYRKGQDIIVAAFKQFQKKHPEALLLTTWHNFWPQYMLGIEQIGNVVGLPNINRDGSLGISQWLAANGLPVESFIDIGLIPNHLAGQILREADAAVFTNRCEGGTNLVAMESMACGIPTILSANTGHLDLIHS--NNCYPLLSQRRVKPTAHFSGVEGWGESDVAEVIEALEQIYTNREQAKSRGLAAAKFM-LDWTWEKQVNRFL 2121          
BLAST of mRNA_S-firma_F_contig10033.98.1 vs. uniprot
Match: A0A7C9PR07_9CYAN (Glycosyltransferase family 4 protein n=1 Tax=Oscillatoria sp. SIO1A7 TaxID=2607767 RepID=A0A7C9PR07_9CYAN)

HSP 1 Score: 225 bits (574), Expect = 3.060e-68
Identity = 126/263 (47.91%), Postives = 168/263 (63.88%), Query Frame = 1
Query:    7 DGLYAGSLWNAEVLQAAGL-DVEVLHQGVDTALFRPMPPAKPTGSEDLFFVFSGGKLEYRKGQDMVIAAFKRFRARHPEAHLLAAWNNLWPHTAASIARSRHTTGTPLV--DGKLEVEAWLLANGLERESFT-LVRAAHERMPEVLAMADAALLPSRCEGGTNLVAMETLAMGLPTILSANSGHLDLLASLGDNVYPLLKQTRSLGLANV----GWRDSDVSEMVARLEDVYGNREVARVKGLAAAAIMDRDWTWPRQMAKLL 771
            + + AGS WN ++L++ G+ +V  + QG+D  +F P P  K     D F +FSGGKLEYRKGQD+VIAAFK F  RHP+A LLAAW+N WP     + ++ +  G P V  D ++ +  WLLANGL   SF  L    +++M  V+  ADAA+  SRCEGGTNL AME++A G+PTILSAN+GHLDLL     + Y L +Q      A      GW +SDV+E+V  LE +Y NRE A  +GLAAA  M +DWTW +Q+ + L
Sbjct:  152 EAIVAGSTWNEQILKSNGIANVCTVQQGIDRTIFHPAP--KSNLFRDRFVIFSGGKLEYRKGQDIVIAAFKEFSRRHPDALLLAAWHNFWPQYMLGLEQTGNVAGLPEVKEDKQIGIGEWLLANGLPENSFIDLGVIPNQQMARVIREADAAIFTSRCEGGTNLGAMESMACGIPTILSANTGHLDLLGE--SHCYSLRQQRPVRPTAQFSGVEGWGESDVAEVVETLEQIYANREEASQRGLAAARFM-QDWTWAKQVRRFL 409          
BLAST of mRNA_S-firma_F_contig10033.98.1 vs. uniprot
Match: A0A418VL91_9PROT (Glycosyltransferase family 1 protein n=2 Tax=Azospirillum cavernae TaxID=2320860 RepID=A0A418VL91_9PROT)

HSP 1 Score: 226 bits (576), Expect = 4.910e-68
Identity = 127/259 (49.03%), Postives = 166/259 (64.09%), Query Frame = 1
Query:   19 AGSLWNAEVLQAAGLD-VEVLHQGVDTALFRPMPPAKPTGSEDLFFVFSGGKLEYRKGQDMVIAAFKRFRARHPEAHLLAAWNNLWPHTAASIARSRHTTGTPLVD--GKLEVEAWLLANGLERESFTLVRAAHER-MPEVLAMADAALLPSRCEGGTNLVAMETLAMGLPTILSANSGHLDLLASLGDNVYPLLKQ----TRSLGLANVGWRDSDVSEMVARLEDVYGNREVARVKGLAAAAIMDRDWTWPRQMAKLL 771
            AG+ W AEVL+ AGL+ V V  QGVD  +F P PP     + D F V+SGGKLE+RKGQD+V+AAF+RF  RHP+A L+A W + WP  A S++ S H    P +D  G ++V  WL  NGL   SF +  A   R M +VL  ADAAL P+RCEGGTNLVAME +A G+PTILSAN+GHLDL+A L      L  Q    +R  G+   GW +S + E+V  LE VY NR+ ARV+   AA  +  +W+W  Q++++L
Sbjct:  199 AGASWTAEVLRGAGLERVVVCPQGVDATVFHPGPPR--AHARDRFIVYSGGKLEFRKGQDVVVAAFRRFHQRHPDALLVAGWFSPWPTLARSMSDSPHLAEAPGLDEKGAVDVAGWLSRNGLPEGSFQVAPAVSNRAMGKVLRQADAALFPNRCEGGTNLVAMEAIACGIPTILSANTGHLDLIADLP--CLALRAQAPVPSRPGGMGTEGWGESSIDEIVEALEHVYANRDAARVQAAQAAERIRTEWSWDVQISRML 453          
BLAST of mRNA_S-firma_F_contig10033.98.1 vs. uniprot
Match: UPI001A8FDD15 (glycosyltransferase n=1 Tax=Phormidium pseudopriestleyi TaxID=1759527 RepID=UPI001A8FDD15)

HSP 1 Score: 227 bits (579), Expect = 1.250e-67
Identity = 123/261 (47.13%), Postives = 167/261 (63.98%), Query Frame = 1
Query:   13 LYAGSLWNAEVLQAAGLD-VEVLHQGVDTALFRPMPPAKPTGSEDLFFVFSGGKLEYRKGQDMVIAAFKRFRARHPEAHLLAAWNNLWPHTAASIARSRHTTGTPLV--DGKLEVEAWLLANGLERESFTLVRAA-HERMPEVLAMADAALLPSRCEGGTNLVAMETLAMGLPTILSANSGHLDLLASLGDNVYPLLKQ----TRSLGLANVGWRDSDVSEMVARLEDVYGNREVARVKGLAAAAIMDRDWTWPRQMAKLL 771
            + AGS WNAEVL++ G+  V+ L QG+D  LF P P +   G  D F +FSGGKLEYRKGQD+VIAAFK F+ RHPEA L+  W+  WP     +    H  G P +  + +L +  WL+ NGL  +SF  + A  +  MP+++  AD AL  +RCEGGTNLVAMET+A G+PTILSAN+GHLDL+    ++ YPL  Q    +    +   GW +SD+ E++  LE +Y NRE+A+ KG+ AA  M + WTW  Q+ +LL
Sbjct:  282 IVAGSTWNAEVLKSQGITTVQALPQGIDPTLFHPAPKSNLFG--DRFVIFSGGKLEYRKGQDIVIAAFKAFQQRHPEALLITTWHTFWPQFMQGLEAKGHVKGLPQIGTNKRLNIADWLVKNGLNPDSFIDIGAIPNYLMPQIIREADCALFTNRCEGGTNLVAMETMACGIPTILSANTGHLDLIEP--NHCYPLRSQKSVQSTPYFIGVEGWGESDIEEILETLETLYQNREIAQQKGMIAAQFMQQ-WTWENQVNRLL 537          
BLAST of mRNA_S-firma_F_contig10033.98.1 vs. uniprot
Match: A0A2T1G3A2_9CYAN (Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY n=1 Tax=filamentous cyanobacterium Phorm 6 TaxID=2107706 RepID=A0A2T1G3A2_9CYAN)

HSP 1 Score: 236 bits (601), Expect = 2.580e-67
Identity = 130/261 (49.81%), Postives = 173/261 (66.28%), Query Frame = 1
Query:   13 LYAGSLWNAEVLQAAGL-DVEVLHQGVDTALFRPMPPAKPTGSEDLFFVFSGGKLEYRKGQDMVIAAFKRFRARHPEAHLLAAWNNLWPHTAASIARSRHTTGTPLV--DGKLEVEAWLLANGLERESFTLVRAAHERMP-EVLAMADAALLPSRCEGGTNLVAMETLAMGLPTILSANSGHLDLLASLGDNVYPLLKQTRSLGLANV----GWRDSDVSEMVARLEDVYGNREVARVKGLAAAAIMDRDWTWPRQMAKLL 771
            + AGS WNA+VL++ GL +V +++QG+D  +F P P +   G  D F +FSGGKLEYRKGQD+VIAAFKRF  +HPEA LL  W+N WP     I ++ +  G P +  DG L +  WL ANGL  +SF  +      +  ++L  ADAA+  +RCEGGTNLVAME++A G+PTILSAN+GHLDL+ S  +  YPL  Q R    A+     GW +SDV+E+V  LE VY NREVA+ +GLAAA  M  DWTW +Q+ + +
Sbjct: 2602 IVAGSNWNADVLRSCGLTNVAMVNQGIDPTIFHPAPKSNLFG--DRFVIFSGGKLEYRKGQDIVIAAFKRFHTKHPEALLLTTWHNFWPQYMLGIEQTGNVAGLPNINRDGSLGISQWLAANGLPIDSFIDIGLIPNHLAGQILREADAAVFTNRCEGGTNLVAMESMACGIPTILSANTGHLDLIYS--NICYPLSHQGRVKPTAHFPGVEGWGESDVAEVVDALEQVYTNREVAKTRGLAAANFM-LDWTWEKQVNRFI 2857          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10033.98.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X6HRW5_9CYAN6.110e-7350.57Glycosyltransferase n=1 Tax=Microcoleus sp. SU_5_6... [more]
A0A2D6D0I8_9BACT5.790e-6948.11Uncharacterized protein n=1 Tax=Candidatus Poribac... [more]
A0A2T1EWN3_9CYAN6.580e-6949.43Uncharacterized protein (Fragment) n=1 Tax=filamen... [more]
K9VL67_9CYAN8.700e-6950.96Probable UDP-N-acetylglucosamine--peptide N-acetyl... [more]
UPI0019BEFC171.940e-6848.29Glycosyltransferase family 4 protein n=1 Tax=Lepto... [more]
A0A355CII8_9CYAN2.900e-6849.43Probable UDP-N-acetylglucosamine--peptide N-acetyl... [more]
A0A7C9PR07_9CYAN3.060e-6847.91Glycosyltransferase family 4 protein n=1 Tax=Oscil... [more]
A0A418VL91_9PROT4.910e-6849.03Glycosyltransferase family 1 protein n=2 Tax=Azosp... [more]
UPI001A8FDD151.250e-6747.13glycosyltransferase n=1 Tax=Phormidium pseudopries... [more]
A0A2T1G3A2_9CYAN2.580e-6749.81Probable UDP-N-acetylglucosamine--peptide N-acetyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10033contigS-firma_F_contig10033:4483..5309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog179408.Osc7112_4373
PFAMsDUF4915,Glyco_transf_9,Glycos_transf_1,TPR_1,TPR_11,TPR_16,TPR_17,TPR_2,TPR_8
Max annot lvl1117|Cyanobacteria
Evalue1.43e-69
EggNOG OGsCOG0438@1|root,COG0457@1|root,COG0859@1|root,COG0438@2|Bacteria,COG0457@2|Bacteria,COG0859@2|Bacteria,1G193@1117|Cyanobacteria,1H799@1150|Oscillatoriales
DescriptionTetratricopeptide repeat
COG categoryM
Hectar predicted targeting categoryother localisation
Exons2
Model size771
Cds size771
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815527.6799657-CDS-S-firma_F_contig10033:4482..49861622815527.6799657-CDS-S-firma_F_contig10033:4482..4986Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10033 4483..4986 -
1696949390.2491558-CDS-S-firma_F_contig10033:4482..49861696949390.2491558-CDS-S-firma_F_contig10033:4482..4986Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10033 4483..4986 -
1622815527.6992083-CDS-S-firma_F_contig10033:5042..53091622815527.6992083-CDS-S-firma_F_contig10033:5042..5309Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10033 5043..5309 -
1696949390.2610264-CDS-S-firma_F_contig10033:5042..53091696949390.2610264-CDS-S-firma_F_contig10033:5042..5309Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10033 5043..5309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10033.98.1prot_S-firma_F_contig10033.98.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10033 4483..5309 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10033.98.1

>prot_S-firma_F_contig10033.98.1 ID=prot_S-firma_F_contig10033.98.1|Name=mRNA_S-firma_F_contig10033.98.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=257bp
MLDGLYAGSLWNAEVLQAAGLDVEVLHQGVDTALFRPMPPAKPTGSEDLF
FVFSGGKLEYRKGQDMVIAAFKRFRARHPEAHLLAAWNNLWPHTAASIAR
SRHTTGTPLVDGKLEVEAWLLANGLERESFTLVRAAHERMPEVLAMADAA
LLPSRCEGGTNLVAMETLAMGLPTILSANSGHLDLLASLGDNVYPLLKQT
RSLGLANVGWRDSDVSEMVARLEDVYGNREVARVKGLAAAAIMDRDWTWP
RQMAKLL
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mRNA from alignment at S-firma_F_contig10033:4483..5309-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10033.98.1 ID=mRNA_S-firma_F_contig10033.98.1|Name=mRNA_S-firma_F_contig10033.98.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=827bp|location=Sequence derived from alignment at S-firma_F_contig10033:4483..5309- (Sphaerotrichia firma ET2_F female)
ATGCTGGACGGCTTGTACGCCGGGTCGCTGTGGAATGCGGAGGTGCTGCA GGCCGCTGGGCTTGACGTGGAAGTCTTGCACCAGGGCGTGGACACGGCAC TGTTTCGGCCAATGCCCCCTGCCAAGCCCACCGGCAGCGAGGACTTGTTT TTCGTGTTTAGCGGCGGCAAGCTGGAGTACCGCAAGGGGCAAGACATGGT GATTGCCGCCTTTAAGCGCTTTCGCGCTCGCCACCCTGAAGCGCACTTGC TTGCAGCGTGGAACAATGTGCGTTTGACGCTGTTTCTACAGGTTTTCTGT GCTTACTTCCCCTCCCTCCCCAGCTGTGGCCACACACCGCCGCCAGCATT GCACGCAGCCGCCACACCACTGGCACGCCCCTCGTGGACGGCAAGCTGGA GGTGGAGGCTTGGCTGCTTGCCAACGGGTTGGAGCGGGAGTCCTTCACGC TGGTCAGAGCCGCCCACGAGCGCATGCCGGAGGTGCTAGCCATGGCGGAC GCTGCCCTGCTGCCGTCCAGGTGTGAGGGCGGCACCAACTTGGTTGCCAT GGAAACACTGGCGATGGGGCTGCCCACCATTCTGTCCGCCAACTCTGGGC ACCTGGACCTCTTGGCCAGCTTGGGTGACAACGTGTACCCGCTGCTGAAG CAAACACGATCCCTGGGGCTGGCCAACGTCGGCTGGCGGGACTCTGACGT GTCGGAAATGGTGGCCCGTTTGGAGGACGTATACGGCAACCGGGAGGTGG CACGGGTGAAGGGCCTGGCCGCCGCCGCCATCATGGACCGGGACTGGACG TGGCCCCGCCAAATGGCTAAGCTGTTG
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Coding sequence (CDS) from alignment at S-firma_F_contig10033:4483..5309-

>mRNA_S-firma_F_contig10033.98.1 ID=mRNA_S-firma_F_contig10033.98.1|Name=mRNA_S-firma_F_contig10033.98.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1542bp|location=Sequence derived from alignment at S-firma_F_contig10033:4483..5309- (Sphaerotrichia firma ET2_F female)
ATGCTGGACGGCTTGTACGCCGGGTCGCTGTGGAATGCGGAGGTGCTGCA
GGCCGCTGGGCTTGACGTGGAAGTCTTGCACCAGGGCGTGGACACGGCAC
TGTTTCGGCCAATGCCCCCTGCCAAGCCCACCGGCAGCGAGGACTTGTTT
TTCGTGTTTAGCGGCGGCAAGCTGGAGTACCGCAAGGGGCAAGACATGGT
GATTGCCGCCTTTAAGCGCTTTCGCGCTCGCCACCCTGAAGCGCACTTGC
TTGCAGCGTGGAACAATATGCTGGACGGCTTGTACGCCGGGTCGCTGTGG
AATGCGGAGGTGCTGCAGGCCGCTGGGCTTGACGTGGAAGTCTTGCACCA
GGGCGTGGACACGGCACTGTTTCGGCCAATGCCCCCTGCCAAGCCCACCG
GCAGCGAGGACTTGTTTTTCGTGTTTAGCGGCGGCAAGCTGGAGTACCGC
AAGGGGCAAGACATGGTGATTGCCGCCTTTAAGCGCTTTCGCGCTCGCCA
CCCTGAAGCGCACTTGCTTGCAGCGTGGAACAATCTGTGGCCACACACCG
CCGCCAGCATTGCACGCAGCCGCCACACCACTGGCACGCCCCTCGTGGAC
GGCAAGCTGGAGGTGGAGGCTTGGCTGCTTGCCAACGGGTTGGAGCGGGA
GTCCTTCACGCTGGTCAGAGCCGCCCACGAGCGCATGCCGGAGGTGCTAG
CCATGGCGGACGCTGCCCTGCTGCCGTCCAGGTGTGAGGGCGGCACCAAC
TTGGTTGCCATGGAAACACTGGCGATGGGGCTGCCCACCATTCTGTCCGC
CAACTCTGGGCACCTGGACCTCTTGGCCAGCTTGGGTGACAACGTGTACC
CGCTGCTGAAGCAAACACGATCCCTGGGGCTGGCCAACGTCGGCTGGCGG
GACTCTGACGTGTCGGAAATGGTGGCCCGTTTGGAGGACGTATACGGCAA
CCGGGAGGTGGCACGGGTGAAGGGCCTGGCCGCCGCCGCCATCATGGACC
GGGACTGGACGTGGCCCCGCCAAATGGCTAAGCTGTTGCTGTGGCCACAC
ACCGCCGCCAGCATTGCACGCAGCCGCCACACCACTGGCACGCCCCTCGT
GGACGGCAAGCTGGAGGTGGAGGCTTGGCTGCTTGCCAACGGGTTGGAGC
GGGAGTCCTTCACGCTGGTCAGAGCCGCCCACGAGCGCATGCCGGAGGTG
CTAGCCATGGCGGACGCTGCCCTGCTGCCGTCCAGGTGTGAGGGCGGCAC
CAACTTGGTTGCCATGGAAACACTGGCGATGGGGCTGCCCACCATTCTGT
CCGCCAACTCTGGGCACCTGGACCTCTTGGCCAGCTTGGGTGACAACGTG
TACCCGCTGCTGAAGCAAACACGATCCCTGGGGCTGGCCAACGTCGGCTG
GCGGGACTCTGACGTGTCGGAAATGGTGGCCCGTTTGGAGGACGTATACG
GCAACCGGGAGGTGGCACGGGTGAAGGGCCTGGCCGCCGCCGCCATCATG
GACCGGGACTGGACGTGGCCCCGCCAAATGGCTAAGCTGTTG
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