mRNA_S-firma_F_contig10012.74.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10012.74.1
Unique NamemRNA_S-firma_F_contig10012.74.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10012.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10012contigS-firma_F_contig10012:865..1527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size663
Cds size663
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815525.2121525-CDS-S-firma_F_contig10012:864..15271622815525.2121525-CDS-S-firma_F_contig10012:864..1527Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10012 865..1527 +
1696949387.952367-CDS-S-firma_F_contig10012:864..15271696949387.952367-CDS-S-firma_F_contig10012:864..1527Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10012 865..1527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10012.74.1prot_S-firma_F_contig10012.74.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10012 865..1527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10012.74.1

>prot_S-firma_F_contig10012.74.1 ID=prot_S-firma_F_contig10012.74.1|Name=mRNA_S-firma_F_contig10012.74.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=221bp
RTSHTWAKSSRLSAAVLEHATTMAEEFEGQTPPPPSAGEPAAPAAEDQQG
LDPMDDGGGGSSPPPDAASIADSADAESAPAAAGDDPMDVAAAAADAGAS
DDAKGEGDGEEADADADSGEGGDGIENDDAGEGGDDADGDGEDASAAGAE
AVANGGGGGGDGDGGDPDAAQEDGAGDGATPEEDVPMGEAAAAAADGANA
EGEQQEEEEEESDSEVELEG*
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mRNA from alignment at S-firma_F_contig10012:865..1527+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10012.74.1 ID=mRNA_S-firma_F_contig10012.74.1|Name=mRNA_S-firma_F_contig10012.74.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=663bp|location=Sequence derived from alignment at S-firma_F_contig10012:865..1527+ (Sphaerotrichia firma ET2_F female)
CGAACCTCACACACTTGGGCGAAGAGCTCTCGTCTCTCCGCTGCGGTGCT
AGAACACGCCACCACAATGGCGGAAGAATTCGAGGGCCAGACGCCCCCTC
CTCCTTCGGCCGGAGAGCCCGCGGCTCCCGCAGCCGAGGATCAGCAGGGG
CTAGACCCGATGGACGACGGGGGCGGGGGATCCTCCCCTCCGCCCGATGC
TGCCTCTATCGCTGACTCCGCTGACGCGGAATCGGCGCCGGCGGCTGCAG
GGGACGACCCTATGGATGTCGCCGCTGCAGCAGCTGATGCTGGTGCTAGT
GACGACGCCAAGGGCGAGGGCGACGGGGAGGAGGCCGATGCCGACGCCGA
CAGCGGGGAAGGCGGCGACGGCATTGAGAACGACGATGCCGGCGAGGGTG
GTGACGACGCCGACGGTGACGGGGAGGATGCCAGCGCCGCCGGCGCGGAA
GCTGTAGCGAACGGCGGGGGCGGGGGCGGGGACGGGGACGGTGGTGACCC
CGACGCGGCCCAAGAAGACGGAGCTGGAGATGGTGCCACCCCGGAAGAGG
ACGTGCCCATGGGCGAGGCGGCGGCGGCGGCGGCAGACGGGGCCAACGCC
GAGGGGGAGCAGCAGGAGGAAGAGGAGGAAGAGAGCGACTCCGAAGTGGA
GCTGGAAGGGTGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10012:865..1527+

>mRNA_S-firma_F_contig10012.74.1 ID=mRNA_S-firma_F_contig10012.74.1|Name=mRNA_S-firma_F_contig10012.74.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1326bp|location=Sequence derived from alignment at S-firma_F_contig10012:865..1527+ (Sphaerotrichia firma ET2_F female)
CGAACCTCACACACTTGGGCGAAGAGCTCTCGTCTCTCCGCTGCGGTGCT
AGAACACGCCACCACAATGGCGGAAGAATTCGAGGGCCAGACGCCCCCTC
CTCCTTCGGCCGGAGAGCCCGCGGCTCCCGCAGCCGAGGATCAGCAGGGG
CTAGACCCGATGGACGACGGGGGCGGGGGATCCTCCCCTCCGCCCGATGC
TGCCTCTATCGCTGACTCCGCTGACGCGGAATCGGCGCCGGCGGCTGCAG
GGGACGACCCTATGGATGTCGCCGCTGCAGCAGCTGATGCTGGTGCTAGT
GACGACGCCAAGGGCGAGGGCGACGGGGAGGAGGCCGATGCCGACGCCGA
CAGCGGGGAAGGCGGCGACGGCATTGAGAACGACGATGCCGGCGAGGGTG
GTGACGACGCCGACGGTGACGGGGAGGATGCCAGCGCCGCCGGCGCGGAA
GCTGTAGCGAACGGCGGGGGCGGGGGCGGGGACGGGGACGGTGGTGACCC
CGACGCGGCCCAAGAAGACGGAGCTGGAGATGGTGCCACCCCGGAAGAGG
ACGTGCCCATGGGCGAGGCGGCGGCGGCGGCGGCAGACGGGGCCAACGCC
GAGGGGGAGCAGCAGGAGGAAGAGGAGGAAGAGAGCGACTCCGAAGTGGA
GCTGGAAGGGTGACGAACCTCACACACTTGGGCGAAGAGCTCTCGTCTCT
CCGCTGCGGTGCTAGAACACGCCACCACAATGGCGGAAGAATTCGAGGGC
CAGACGCCCCCTCCTCCTTCGGCCGGAGAGCCCGCGGCTCCCGCAGCCGA
GGATCAGCAGGGGCTAGACCCGATGGACGACGGGGGCGGGGGATCCTCCC
CTCCGCCCGATGCTGCCTCTATCGCTGACTCCGCTGACGCGGAATCGGCG
CCGGCGGCTGCAGGGGACGACCCTATGGATGTCGCCGCTGCAGCAGCTGA
TGCTGGTGCTAGTGACGACGCCAAGGGCGAGGGCGACGGGGAGGAGGCCG
ATGCCGACGCCGACAGCGGGGAAGGCGGCGACGGCATTGAGAACGACGAT
GCCGGCGAGGGTGGTGACGACGCCGACGGTGACGGGGAGGATGCCAGCGC
CGCCGGCGCGGAAGCTGTAGCGAACGGCGGGGGCGGGGGCGGGGACGGGG
ACGGTGGTGACCCCGACGCGGCCCAAGAAGACGGAGCTGGAGATGGTGCC
ACCCCGGAAGAGGACGTGCCCATGGGCGAGGCGGCGGCGGCGGCGGCAGA
CGGGGCCAACGCCGAGGGGGAGCAGCAGGAGGAAGAGGAGGAAGAGAGCG
ACTCCGAAGTGGAGCTGGAAGGGTGA
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