mRNA_S-firma_F_contig10007.69.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10007.69.1
Unique NamemRNA_S-firma_F_contig10007.69.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10007.69.1 vs. uniprot
Match: A0A6H5KET6_9PHAE (UV excision repair protein RAD23 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KET6_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 1.850e-88
Identity = 234/339 (69.03%), Postives = 249/339 (73.45%), Query Frame = 2
Query:    8 MSRSLLVKTIKGEAFRVDVAEECKMSDVKAKISEVRGDDPASQQLICGGKMLKDDDALATGVPAGGFLVLMVKKRRAAPAVPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAVDPASVEMLTAMGFPEDQATAALRAAFNDVSRAASYLMEGIPDDVVAAGAGVRQQGGDDAMGGADAEDGG-----------------------AADLAEALMEMQGGEGNPLNFMRFHPQFDQLRNLVRENPAMLPQVLQGLANQSPELIERINQHPDDFLRLMNEPPDAAGQAMMDMG 955
            M+RSL VKT+KGE FR+DVAEE  MSDVKAKI+EVRG DPA+Q LICGGK LKD D+LA  V AGGFLVLMVK RRA P   AA     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                L+VDP +V+MLTAMGFP DQATAALRAAFNDVSRAASYLMEGIP +   AGAG          GG DA                           AA LA+ALM M+ GEGNPLNFMRFHPQFD+LR LVRENPAMLPQVLQ LA QSPELI RINQHPD FLRLMNEPPDA GQA+M+MG
Sbjct:    1 MTRSLTVKTLKGEVFRIDVAEESVMSDVKAKIAEVRGHDPATQVLICGGKTLKDGDSLADSVAAGGFLVLMVK-RRANPVANAAPTPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGANET---------LSVDPTNVDMLTAMGFPADQATAALRAAFNDVSRAASYLMEGIPHN---AGAGT---------GGGDARXXXXXXXXXXXXXXXXXXXXXEXXXXAAGLAQALMGMEAGEGNPLNFMRFHPQFDELRGLVRENPAMLPQVLQALATQSPELIGRINQHPDAFLRLMNEPPDAEGQAIMEMG 317          
BLAST of mRNA_S-firma_F_contig10007.69.1 vs. uniprot
Match: A0A836CLA0_9STRA (UV excision repair protein RAD23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLA0_9STRA)

HSP 1 Score: 109 bits (272), Expect = 8.570e-25
Identity = 68/150 (45.33%), Postives = 88/150 (58.67%), Query Frame = 2
Query:  521 MGFPEDQATAALRAAFNDVSRAASYLMEGIPD----DVVAAGAGVRQQGGD--------DAMGGADAEDGGAADLAEALMEMQGGEGNPLNFMRFHPQFDQLRNLVRENPAMLPQVLQGLANQSPELIERINQHPDDFLRLMNEPPDAAG 934
            MGFPEDQ  AAL+AAFN++  AA+YLM G+PD    D  A    +   G          D + G   +  G AD  EA    +GG  NPL  +R+HPQF +LR LV+ NPA LP+++QG+  QSPEL+  IN HP  F++LMN   D  G
Sbjct:    1 MGFPEDQVRAALQAAFNNLEVAANYLMTGLPDFAAPDFEAHQPNIETSGVGGTVGIVPADILSGPMGDTLGDADDMEAAQGFEGG-ANPLAALRYHPQFLELRELVQSNPAALPEIIQGIGEQSPELLNMINAHPQAFVQLMNSTGDDLG 149          
BLAST of mRNA_S-firma_F_contig10007.69.1 vs. uniprot
Match: A0A1Y1XXG2_9FUNG (UV excision repair protein RAD23 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XXG2_9FUNG)

HSP 1 Score: 102 bits (255), Expect = 3.170e-21
Identity = 130/312 (41.67%), Postives = 178/312 (57.05%), Query Frame = 2
Query:   26 VKTIKGEAFRVDVAEECKMSDVKAKISEVRGDDPASQQLICGGKMLKDDDALAT-GVPAGGFLVLMVKKRRAAPAVPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAVDP---ASVEMLTAMGFPEDQATAALRAAFNDVSRAASYLMEGIPDDVVA-AGAGVRQQGGDDAMGGADAEDGGAADLAEALMEMQG----------GEGNPLNFMRFHPQFDQLRNLVRENPAMLPQVLQGLANQSPELIERINQHPDDFLRLMNE 916
            +KT++ +AF++DV  E K+S +K KI + +G   + Q+LI  GK+L DD  +A+  V    F+V+MV K +A+PA   +            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   GL   P   A++  +  MGF  +Q T ALRA+FN+  RA  YLM GIP+ ++       +Q+    +   A    G   +L  A  +             G G  L+F+R  PQF QLR LV++NPA+L  +LQ L   +P+L++ IN + D FL+L++E
Sbjct:    5 IKTLQQKAFQIDVEPEDKISTLKEKIEQSQGHQVSHQKLIFSGKILNDDQTVASCNVTEKDFMVVMVSKPKASPAAAKSPAPATPAVTAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGWESGN-----------GLVTGPEYEAAINNMIEMGFEREQVTKALRASFNNPERAVEYLMNGIPEHLLGNTQQPAQQEAHTPSQVPASPASGQPQNLFTAAAQQAAQERGAQPQATGGGGDLSFLRSQPQFQQLRQLVQQNPALLQPLLQQLGQANPQLLQLINANQDTFLQLLSE 305          
BLAST of mRNA_S-firma_F_contig10007.69.1 vs. uniprot
Match: A0A1V9XA41_9ACAR (UV excision repair protein RAD23 n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9XA41_9ACAR)

HSP 1 Score: 102 bits (253), Expect = 3.850e-21
Identity = 104/320 (32.50%), Postives = 150/320 (46.88%), Query Frame = 2
Query:    8 MSRSLLVKTIKGEAFRVDVAEECKMSDVKAKISEVRGD--DPASQQLICGGKMLKDDDAL-ATGVPAGGFLVLMVKKRRAAPAVPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAVDPAS-VEMLTAMGFPEDQATAALRAAFNDVSRAASYLMEGIPDDVVAAGAGVRQQGGDDAMGGADAEDGGAADLAEALMEMQGGEGNPLNFMRFHPQFDQLRNLVRENPAMLPQVLQGLANQSPELIERINQHPDDFLRLMNEPPDAAGQAMMDMG 955
            M  ++ +K +  E F +++ +EC + ++KAKI E +GD    A Q+LI  G+++ DD+ L A  +    F+V+MV K   APA P                        XXXXXXXXXXXXXX                                        VD  S V  +T MG+P DQ   ALRA++N+  RA  YL+ GIP +      GV       A GGA          A      QG E  PL+F+R  PQF Q+RN +RENPA+L  ++Q L + +P+++  I Q+ D+F+ L+NE      + +  +G
Sbjct:    1 MLLTVSLKCLTNELFTIEIDDECTVKEMKAKIYEQKGDAFPAAHQKLIAQGRIMADDEKLKAYELHNVKFVVIMVSKPAPAPAAPPGGAQAASKVTPPAPAETPASTDNXXXXXXXXXXXXXXTPNAATGESALVR--------------------------GVDYESMVRNITEMGYPRDQVERALRASYNNPDRAVEYLVTGIPPEEDEPQIGVNLP----ATGGA------GTVTAPGGPPGQGSEP-PLSFLRTQPQFQQMRNAIRENPALLESIIQQLGSNNPDMLRLITQNQDEFMHLLNEEDGRGEEPLAALG 283          
BLAST of mRNA_S-firma_F_contig10007.69.1 vs. uniprot
Match: A0A7M7J9X3_VARDE (UV excision repair protein RAD23 n=2 Tax=Varroa destructor TaxID=109461 RepID=A0A7M7J9X3_VARDE)

HSP 1 Score: 101 bits (251), Expect = 8.510e-21
Identity = 86/316 (27.22%), Postives = 129/316 (40.82%), Query Frame = 2
Query:    8 MSRSLLVKTIKGEAFRVDVAEECKMSDVKAKISEVRGD--DPASQQLICGGKMLKDDDALAT-GVPAGGFLVLMVKKRRAAPAVPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAVDPASVEMLTAMGFPEDQATAALRAAFNDVSRAASYLMEGIP--DDVVAAGAGVRQQGGDDAMGGADAEDGGAADLAEALMEMQGGEGNPLNFMRFHPQFDQLRNLVRENPAMLPQVLQGLANQSPELIERINQHPDDFLRLMNEPPDAAGQA 940
            M  ++ +K +  E F V++ +EC + ++K KI E +G+    A Q+LI  G+++ DDD L T  +    F+V+MV K   AP  P                                                                                  +V  +  MG+P DQ   ALRA++N+  RA  YL+ GIP  +D  A G  V   GG                        QGGE + LNF+R  PQF Q+RN +RENP +L  ++Q L   +P+L+  I ++  +F+RL+NE  D  G+A
Sbjct:    1 MLLTVSLKCLTNELFTVEIDDECTVKEMKEKIFEQKGEAFPAAHQKLIAQGRIMADDDKLKTYELDKVKFVVIMVSKPAPAPVAPPGGAMAAPKPAPPDAPESPLNRDEPSRDTPTPTRPSNPTPNAATGESGLVRSDNYD-------------------------GTVRNIMEMGYPRDQVERALRASYNNAERAVEYLVTGIPVEEDEPAVGVNVPATGGVXXXX--------XXXXXXXXXXSQGGEPH-LNFLRSQPQFQQMRNAIRENPTLLESIIQQLGANNPDLLRLITENQAEFMRLLNEEDDEVGEA 282          
BLAST of mRNA_S-firma_F_contig10007.69.1 vs. uniprot
Match: L8GWS2_ACACA (UV excision repair protein RAD23 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GWS2_ACACA)

HSP 1 Score: 101 bits (251), Expect = 1.400e-20
Identity = 117/321 (36.45%), Postives = 160/321 (49.84%), Query Frame = 2
Query:   26 VKTIKGEAFRVDVAEECKMSDVKAKISEVRGDDPASQQLICGGKMLKDDDALAT-GVPAGGFLVLMVKKRR----AAPAVPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAVDPASVEMLTAMGFPEDQATAALRAAFNDVSRAASYLMEGIPDDVVAAGAG-VRQQGGDDAMGGADAED--------------GGAA---DLAEALMEMQGGEGNPLNFMRFHPQFDQLRNLVRENPAMLPQVLQGLANQSPELIERINQHPDDFLRLMNEP 919
            +KTI+ + F V+V +   + DVK K+  +R ++ A Q+LI  GK+L DD  + T  +    FLVLMV+K +    AAPA PAA   XXXXX      XXXXXXXXXXXXXXXXXX                                               A V  +  MGFP ++   ALRA+FN+ +RA  YLM GIPD    A A    ++    A GG  A                GG +   +L  ALM  QGG G    ++R HPQF+Q++ +V+ NP +L  +LQ L   +P++++ I QH  +F+ L+NEP
Sbjct:    6 IKTIQQQQFEVEVPDTATVLDVKKKVEALRSENVAWQKLIFAGKILADDAKINTLNIKPTEFLVLMVRKPKEANVAAPA-PAAQPAXXXXXAQPTQTXXXXXXXXXXXXXXXXXXPSSGGSIESEAASALVTGSDFE-------------------------AMVSNIMEMGFPREEVLRALRASFNNPNRAVEYLMTGIPDMPAQAPASPAAERAAAPAAGGEGAXXXXXXXXXXXXXXXXGGISLPSNLLGALMGQQGGAGGHFEWLRQHPQFNQIKAMVQRNPQLLGPLLQQLGQLNPQILQMIGQHQAEFMALLNEP 300          
BLAST of mRNA_S-firma_F_contig10007.69.1 vs. uniprot
Match: UPI001425B0E0 (UV excision repair protein RAD23 homolog B-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425B0E0)

HSP 1 Score: 98.6 bits (244), Expect = 1.610e-19
Identity = 137/334 (41.02%), Postives = 183/334 (54.79%), Query Frame = 2
Query:   20 LLVKTIKGEAFRVDVAEECKMSDVKAKISEVRGDD--PAS-QQLICGGKMLKDDDALAT-GVPAGGFLVLMVKKRRAA--PAVPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGL------AVDPASVEMLTAMGFPEDQATAALRAAFNDVSRAASYLMEGIPDDVVA---AGAGVRQQGGDDAMGGAD-----------AEDGG---AADLAEALMEMQGGEGNPLNFMRFHPQFDQLRNLVRENPAMLPQVLQGLANQSPELIERINQHPDDFLRLMNEPPDAAG 934
            + +KT++   F++++ E C + ++K KI   +G +  PA+ Q+LI  GK+L DD  L    +    F+V+MV K +A+  PA P AS    XXXXXXXXXXXXXXXXXXXXXXX   XXXXXXXXXXXXXXXXXXXXXX                            A     V  L AMGF  D+ T ALRA+FN+  RA  YL+ GIP+ V     A A  +Q     A   AD           A  GG   A   A+   +      +PL F+R  P+F Q+R+++R+NP +LP +LQ L   +P L++ IN+H   F+ L+NEP  + G
Sbjct:    3 ITIKTLQQVTFQIEIDETCSVKELKEKIESEKGSEGFPANGQKLIYAGKILSDDSQLKEYNIVPANFVVVMVTKAKASSVPAKPPASTTPAXXXXXXXXXXXXXXXXXXXXXXXDSNXXXXXXXXXXXXXXXXXXXXXXSEATDAPADIEGASASALSQAESALVIGAEYEQMVSQLMAMGFGRDKVTLALRASFNNPDRATEYLLSGIPESVTREMNAAAEAQQAAVQGAQPAADQPPXXXXXXXPASTGGQPAAVPPAQIPGQEASSAEDPLGFLRLQPEFQQMRHMLRQNPHLLPALLQQLGQSNPPLLQLINRHQQSFIELLNEPEGSGG 336          
BLAST of mRNA_S-firma_F_contig10007.69.1 vs. uniprot
Match: A0A7S3P0B9_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P0B9_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 5.920e-19
Identity = 148/300 (49.33%), Postives = 183/300 (61.00%), Query Frame = 2
Query:   26 VKTIKGEAFRVDVAEECKMSDVKAKISEVRGDDPA-SQQLICGGKMLKDDDALAT-GVPAGGFLVLMVKKRRAAPAVPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAVDPASVEMLTAMGFPEDQATAALRAAFNDVSRAASYLMEGIPDDVVAAGAGVRQQGGDDAMGGADAEDGGAADLAEALMEMQGGEGNPLNFMRFHPQFDQLRNLVRENPAMLPQVLQGLANQSPELIERINQHPDDFLRLMNEP 919
            VKT+ G  F ++  +   ++ VK  I     + PA S +LI  GK+LKD+D L+T G+    FLV+M+ K++AAP  PA  XXXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     A+  A+VE L  MGFPE+     +R A  +   A  +L  GIP+ +  A      +GG        A  GG A               PL  +R HPQF+ LR LV+ NP ML QVL  +  Q P+L++ IN +   FL++MNEP
Sbjct:    5 VKTLTGRKFPIEADDSSTVAAVKGIIEAANAELPAASMKLIHSGKVLKDEDILSTVGIKENDFLVVMITKKKAAPKTPAPQXXXXXXXXXXXXXXXXXXXXXXXXXAASTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP----AISDAAVENLVGMGFPEEAVRHCMRVAQGNPDLAVEFLTNGIPEGMEQAMQAAAARGGT-----TPASSGGTASTT----------AQPLQALRNHPQFNDLRRLVQSNPQMLQQVLTQIGQQQPDLLQEINANQALFLQMMNEP 285          
BLAST of mRNA_S-firma_F_contig10007.69.1 vs. uniprot
Match: A0A6P7JCC0_9TELE (UV excision repair protein RAD23 n=1 Tax=Parambassis ranga TaxID=210632 RepID=A0A6P7JCC0_9TELE)

HSP 1 Score: 95.9 bits (237), Expect = 1.040e-18
Identity = 113/309 (36.57%), Postives = 161/309 (52.10%), Query Frame = 2
Query:   20 LLVKTIKGEAFRVDVAEECKMSDVKAKISEVRGDDP---ASQQLICGGKMLKDDDALAT-GVPAGGFLVLMVKKRRAAPAVPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAVDPASVEMLTAMGFPEDQATAALRAAFNDVSRAASYLMEGIPDDVVAAGAGVRQQGGDDAMGGADA-EDGGAADLAEALMEMQGGEGNPLNFMRFHPQFDQLRNLVRENPAMLPQVLQGLANQSPELIERINQHPDDFLRLMNEP-PDA 928
            + +KT++ + F+V++ E+  +  +K +I + +G D    A  +LI  GK+L DD AL    +    F+V+MV K + A A P   XXXXXXXXXXXXXXXXXXX    XXXXXXXXX                                        G + D    EM+  MG+  +Q  AALRA+FN+  RA  YL+ GIP      G      G   ++ G  A   GG +  A        G GNPL+F+R  PQF  +R L+++N A+LP +LQ +  ++PEL+  I+ H + F++++NEP PDA
Sbjct:    3 ITLKTLQQQTFKVEIDEDETVKTLKERIEQEKGKDHFSVAGLKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKTASAAPQXXXXXXXXXXXXXXXXXXXXXPAEQXXXXXXXXXKESSTAAEPPSTPVGSSGVSVSTNLINEAVSNLVT-----GPSYDAMVNEMML-MGYEREQVVAALRASFNNPDRAVEYLLTGIPGR--GQGHATGPDGESSSVSGTPALPTGGISIPANTGSSPSAGGGNPLSFLRNQPQFHVMRQLIQQNTALLPALLQEIGRENPELLREISNHQEQFIQMLNEPNPDA 303          
BLAST of mRNA_S-firma_F_contig10007.69.1 vs. uniprot
Match: A0A663FJ19_AQUCH (UV excision repair protein RAD23 n=1 Tax=Aquila chrysaetos chrysaetos TaxID=223781 RepID=A0A663FJ19_AQUCH)

HSP 1 Score: 95.1 bits (235), Expect = 1.830e-18
Identity = 53/139 (38.13%), Postives = 82/139 (58.99%), Query Frame = 2
Query:  503 VEMLTAMGFPEDQATAALRAAFNDVSRAASYLMEGIPDDVVAAGAGVRQQGGDDAMGGADAEDGGAADLAEALMEMQGGEGNPLNFMRFHPQFDQLRNLVRENPAMLPQVLQGLANQSPELIERINQHPDDFLRLMNEP 919
            V  + +MG+  +Q  AALRA+FN+  RA  YL+ GIP+D  A G   +      A  GA      AA +A   M     EG+PL F+R  PQF Q+R ++++NP++LP +LQ +  ++P    +I+QH + F+ ++NEP
Sbjct:  163 VTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPEDNQAVGEPPQA-----ASTGASQPSAVAAAVATIPMTTSSLEGHPLEFLRHQPQFQQMRQIIQQNPSLLPALLQQIGRENPXXXXQISQHQEHFIHMLNEP 296          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10007.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KET6_9PHAE1.850e-8869.03UV excision repair protein RAD23 n=2 Tax=Ectocarpu... [more]
A0A836CLA0_9STRA8.570e-2545.33UV excision repair protein RAD23 n=1 Tax=Tribonema... [more]
A0A1Y1XXG2_9FUNG3.170e-2141.67UV excision repair protein RAD23 n=1 Tax=Basidiobo... [more]
A0A1V9XA41_9ACAR3.850e-2132.50UV excision repair protein RAD23 n=1 Tax=Tropilael... [more]
A0A7M7J9X3_VARDE8.510e-2127.22UV excision repair protein RAD23 n=2 Tax=Varroa de... [more]
L8GWS2_ACACA1.400e-2036.45UV excision repair protein RAD23 n=1 Tax=Acanthamo... [more]
UPI001425B0E01.610e-1941.02UV excision repair protein RAD23 homolog B-like n=... [more]
A0A7S3P0B9_9STRA5.920e-1949.33Hypothetical protein n=2 Tax=Amphora coffeiformis ... [more]
A0A6P7JCC0_9TELE1.040e-1836.57UV excision repair protein RAD23 n=1 Tax=Parambass... [more]
A0A663FJ19_AQUCH1.830e-1838.13UV excision repair protein RAD23 n=1 Tax=Aquila ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10007contigS-firma_F_contig10007:230..4604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LSP6
Preferred nameRad23
PFAMsUBA,XPC-binding,ubiquitin
Max annot lvl2759|Eukaryota
KEGG koko:K10839,ko:K18180,ko:K20102
KEGG Pathwayko03420,ko04141,ko04714,map03420,map04141,map04714
GOsGO:0000003,GO:0000746,GO:0000747,GO:0000753,GO:0000767,GO:0000902,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006605,GO:0006612,GO:0006620,GO:0006810,GO:0006886,GO:0006950,GO:0006996,GO:0007029,GO:0008104,GO:0008150,GO:0009266,GO:0009409,GO:0009628,GO:0009653,GO:0009987,GO:0010256,GO:0010494,GO:0015031,GO:0015833,GO:0016043,GO:0019953,GO:0022414,GO:0031593,GO:0032182,GO:0032502,GO:0032989,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035770,GO:0036464,GO:0042886,GO:0043130,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0044703,GO:0044764,GO:0044877,GO:0045047,GO:0045048,GO:0045184,GO:0046907,GO:0048856,GO:0048869,GO:0050896,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0061024,GO:0070628,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071840,GO:0072379,GO:0072380,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0140030,GO:1990904
Evalue1.67e-94
EggNOG OGsCOG5272@1|root,KOG0011@2759|Eukaryota
Descriptiondamaged DNA binding
COG categoryO
BRITEko00000,ko00001,ko03019,ko03029,ko03051,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-associated domain/translation elongation factor EF-Ts, N-terminal
Ec32 orthologEc-15_003090.1
Exons7
Model size958
Cds size951
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10007.69.1prot_S-firma_F_contig10007.69.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10007 230..4597 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815524.5555956-CDS-S-firma_F_contig10007:229..3281622815524.5555956-CDS-S-firma_F_contig10007:229..328Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10007 230..328 -
1696949387.1137388-CDS-S-firma_F_contig10007:229..3281696949387.1137388-CDS-S-firma_F_contig10007:229..328Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10007 230..328 -
1622815524.5685186-CDS-S-firma_F_contig10007:1052..11241622815524.5685186-CDS-S-firma_F_contig10007:1052..1124Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10007 1053..1124 -
1696949387.1386886-CDS-S-firma_F_contig10007:1052..11241696949387.1386886-CDS-S-firma_F_contig10007:1052..1124Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10007 1053..1124 -
1622815524.5780203-CDS-S-firma_F_contig10007:1638..17931622815524.5780203-CDS-S-firma_F_contig10007:1638..1793Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10007 1639..1793 -
1696949387.1668894-CDS-S-firma_F_contig10007:1638..17931696949387.1668894-CDS-S-firma_F_contig10007:1638..1793Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10007 1639..1793 -
1622815524.5873368-CDS-S-firma_F_contig10007:2361..24521622815524.5873368-CDS-S-firma_F_contig10007:2361..2452Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10007 2362..2452 -
1696949387.183772-CDS-S-firma_F_contig10007:2361..24521696949387.183772-CDS-S-firma_F_contig10007:2361..2452Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10007 2362..2452 -
1622815524.5973587-CDS-S-firma_F_contig10007:3007..33191622815524.5973587-CDS-S-firma_F_contig10007:3007..3319Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10007 3008..3319 -
1696949387.1957424-CDS-S-firma_F_contig10007:3007..33191696949387.1957424-CDS-S-firma_F_contig10007:3007..3319Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10007 3008..3319 -
1622815524.606514-CDS-S-firma_F_contig10007:3680..38301622815524.606514-CDS-S-firma_F_contig10007:3680..3830Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10007 3681..3830 -
1696949387.2053947-CDS-S-firma_F_contig10007:3680..38301696949387.2053947-CDS-S-firma_F_contig10007:3680..3830Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10007 3681..3830 -
1622815524.6160371-CDS-S-firma_F_contig10007:4525..45971622815524.6160371-CDS-S-firma_F_contig10007:4525..4597Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10007 4526..4597 -
1696949387.2204175-CDS-S-firma_F_contig10007:4525..45971696949387.2204175-CDS-S-firma_F_contig10007:4525..4597Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10007 4526..4597 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815524.6269867-UTR-S-firma_F_contig10007:4597..46041622815524.6269867-UTR-S-firma_F_contig10007:4597..4604Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10007 4598..4604 -
1696949387.2300367-UTR-S-firma_F_contig10007:4597..46041696949387.2300367-UTR-S-firma_F_contig10007:4597..4604Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10007 4598..4604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10007.69.1

>prot_S-firma_F_contig10007.69.1 ID=prot_S-firma_F_contig10007.69.1|Name=mRNA_S-firma_F_contig10007.69.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=317bp
MSRSLLVKTIKGEAFRVDVAEECKMSDVKAKISEVRGDDPASQQLICGGK
MLKDDDALATGVPAGGFLVLMVKKRRAAPAVPAASAPAAAAAPVPAPTPA
AAAAAAAPPAPVAAAAAAAATPAATPASAPAPSPPPPAAAGAGAGAGAAA
GGGGGGDGLAVDPASVEMLTAMGFPEDQATAALRAAFNDVSRAASYLMEG
IPDDVVAAGAGVRQQGGDDAMGGADAEDGGAADLAEALMEMQGGEGNPLN
FMRFHPQFDQLRNLVRENPAMLPQVLQGLANQSPELIERINQHPDDFLRL
MNEPPDAAGQAMMDMG*
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mRNA from alignment at S-firma_F_contig10007:230..4604-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10007.69.1 ID=mRNA_S-firma_F_contig10007.69.1|Name=mRNA_S-firma_F_contig10007.69.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4375bp|location=Sequence derived from alignment at S-firma_F_contig10007:230..4604- (Sphaerotrichia firma ET2_F female)
TATCACGATGTCGAGATCTCTGCTGGTGAAGACGATCAAGGGGGAGGCCT TCCGAGTAGACGTGGCCGAAGAGTGTAAGGTGAGAGAGGGACAACTGTCT GAGTGACATTTCCCGCGGCGGAGACGAGAGACAAACCACCGCCCACGTGC CCTTGCGGGAAGCAGCAATTTGTCTGACCATGGTCCTATGATAGTTGACT CCACCGCATGCCGTAATCCTGTGCACGCGCTTTGCTCAGGCGGAGGGAAG CCAAGAGAGTTGGAAAAAAGCCAAGAGTCCAAGGGTTAGGTTTGCTGGGC CATTGTTTTTGAAGTTGCCGAAAGAACAAGAACTATCAAGAAACGGCGAG TTTTTTGGCTCACGCAAACACCCCGACGGCCGAGCATGTTGTTGGTGCAA AGAAGACGGGATGCCTGCTCGCCAGACACGTGCTTTGCCGCGTGAGAGCA AAGCGAGCACCCGGGTTTGTTTGCATTTCTCGAAACCCGCCACCCAGAGT GAGAACATGAATACCAGCTTCTGTGCCGAAATCCAACATATCCGAGGCCA AAAGACGTTCGTTGAGACAGCCCGCACGCCTGCACACAAGCACGAAATGT ACACCAACACTCCTTACTTGTGCAGCGTACAAGGTCTGATTTTTTATTGG CCGGGGTGCACAGATTATTTTTTTTGCCTTTGATCTTTTAAATATATTTT CTACATTCGTCAGCCGTATGATCTTTTCGTCTCTTGTCGTGTGTTCCGCA AAAAAAAAAAAAAAAAAAAAAAAGATGAGCGACGTAAAGGCGAAGATCTC GGAGGTCCGGGGCGACGACCCCGCTAGCCAGCAGCTCATCTGCGGCGGAA AAATGCTCAAGGACGACGACGCCCTCGCCACCGGCGTGCCCGCCGGCGGC TTCCTGGTCCTCATGGTCAAGAAGGTATCCAAGGCACCCACCCCACCCCG ACTTGTTTTGCGGTTGAGATTCCGAGGGGGAAAGCAGAAAGCGGGCGTGC GGGATGACCCAGAGCGCGGAGCAGAGAACGAAAGGGTTGAATGGCAAAAT GTTACATACGGAGTAAATACTTTCATGGCTGGTGGCATCGTGATGCTCTA CATACCCCACACGCGCGCGTGAAGCTTGCAACCATGGAATGTACGACCAA TCCAAAGATCCAAAGCTACACCGACCTTACCCCGCACCCCCCGCACCCCG CCCGCCTGCCCCCCCCCCCCCCCCCCCCCCCTCCCCTCCCCTCCCCTCCC CTCCCCTCCCCTCCCCTCCCCTCGCCGTCGTCTAGCGACGGGCCGCCCCG GCAGTACCGGCCGCTTCGGCACCCGCTGCTGCCGCCGCTCCTGTCCCAGC TCCCACTCCTGCTGCTGCTGCTGCTGCCGCCGCACCCCCTGCCCCGGTGG CAGCAGCAGCAGCAGCAGCAGCTACACCCGCAGCTACACCCGCCTCTGCG CCCGCTCCTTCGCCACCACCACCAGCGGCGGCGGGGGCCGGGGCCGGGGC CGGAGCTGCGGCCGGCGGCGGGGGCGGGGGCGACGGTCTTGCGGTAGACC CCGCCAGCGTGGAAATGCTGACGGCGATGGGCTTCCCCGAGGACCAGGTG AAGAAAGCGAGGCACAAGCTTGTGTAGGAAGATAGTCGATAATATGGGGA TGGTCAACGTTTTTCATACAGTACTGCTATGCGCGACGCCGGCAGGGCAT GTTTTTTTCCTCGATGGGATAAGGCACGGTACACACCGAGTGGCAGCGAG CGTCACGGGGCACCACGTCTTGTATGCCTTGTCCTGCGGCGACGCAACAT TGGTACTCTACCCATCACACCCCGCCTTCTTCCACGTGCCTTCACATAAT GTCGCCAAGCTGTCGAGGTATGATAGCTGTCGTTGTCGGCCCAGGGTGTG CGTGTGGTACACGCGCTTGTTTGCGCCCCGTATGCAAACCAAATCCGCAC ACGCAAGCGTTCTACACATCAGCAAGTGGGCGACCTGTTGTTTTTTGTCT TCGTTTCGGAATCGCTTTTTTTTTTGTTATTGGTGACTTCAGCCGCACGT GACGTGAAGATTTTTATTTATTTATTTTTTTCTTGTTTTTCTAAAAATTG TACTAAATGTTCTCCAAACTTTATGGTGTTGTGCGGTGATGATGCGTCGC AGGCAACGGCAGCTCTGCGGGCGGCATTCAACGACGTGAGCAGGGCGGCG AGCTACCTCATGGAAGGCATCCCCGACGACGTCGTGGCGGCGGGTGAGGA ACGGTCCCCGTCCCCACGTGGACCGATGTATGTCACGCACAGGGGGGGGC ACAACTGCTTACATCCATTGGTATGGGGTTGGCCCGACGGGCCTGCGCCA CTACTGCTGTCTCCGATGGGTTTCCAATACTGCTGTCTCCGATGAGTTTT TGTTTGCTGCCACCCCCCGGTCTGTGTGCTCTGCACTTCTACACTGCTGT TTCGCGGCTCATGCAGACGACGCTCCTGTCAGCGGGGCGACACAGCGGGC GAAGGGGCGAGGACTATGATATTATAAGCAACCCCCCCCCCCCCTTCTCG CAGCCGAGTGCTTAACAAAGGAAGCTTGCGCTGGACGACCGACGTCCACT CCGCCCTCCGTAGCGCAACTACTGCTGTGCGACAACGACCACATCGGATC ATACTAGTGTACCTCGAGAGAGGCTTGAGCACCGGACCAGACCGCACGAA AAACGCCTGATTCCTCATGTGCGTTACATCCATACACGAATGCGTCCGCC CGACCGGGGTTGTTATTCTGCCCCCCCCCCCCCGCAGGTGCCAGCAGCGG AGGAGGAGCAGGAGCAGGAGTCCGACAACAGGGCGGCGACGATGCGATGG GCGGGGCAGACGCGGAAGACGGGGGGGCCGCGGACCTGGCCGAGGCGCTG ATGGAGATGCAGGGGGGCGAGGGGAACCCACTCAACTTCATGAGATTCCA CCCGCAGTTCGACCAGGTCAGCGAAGGCTGAGGCCGCCCTGATTTCTTCC GAAGCCATGACCGCCGTGGCTTCGCGAACCTTTGAGGGTGTTTTTTTTGG TTTTTTTTTACGTGCACCTGGCGCTGGGGGGGGGGGGGGGGGGGGGGGGC GCCGTAGTTCCAGGTATGCGACACAGGTGCGTCCATCGGGGGGCCAAGAA CTTAGAAGGACGTGCTGGGCCCATGTCTTCCACACTCCTCCAGGACTGGA CTTTGAAGCGATCCAGGACCAATCAGCCCCTTGAACCCTAGCTCGCGATT CTCCAGGGACAGACTGTTTCTCCCGCAGCGTGCGTTGTATGATACAAAAG TGATCTCTTGTCTTGTCTTCTGTCCAGCCTTGGAACTCCTTGGGTTTGGG TCTAGTGTAGAACCACTTCTAGAGAGAGTGAGAGTGACAGAGAGAGAGAG AGAGAGAGAGAGAGGTGAATCGATGGAAAAGGTGGTGTCAACCAAGTTTC CCTTGATGCCGTCGTATTTTCACCCCGCAGCTCCGAAATCTGGTGCGAGA GAACCCGGCGATGCTTCCCCAGGTGCTCCAGGGGCTGGCGAACCAAAGCC CGGTGAGCCGAGCGTGTTTCGCGGGTTCTGTTGTTGTTGTTGTTGCTGTT GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT TGTTGTTGCTGTTGTTGTTGTTGTTGTTGCTGTTGGTGTTGTCGTTGTTG TCGTTGTTGTTGGTGTTGTTTGTTGGTGTTGTTGTTGTTGTTGTTTATTT TGTTCTCCTATGGATACCCCCGTACGTTCTAGTAGTGGGCGAGTTTGGGT TATTGTGTAGCAAATGCAGGTGTGGTTATGTCGCCCATGGTCTATGTAGG TATACCGGTGTGCGGCTTCGATCCTGGGTCCAAGTGCAGCGTTTGTTCGC ATTTTATTGTTTTTTGTCGGGTTTGTAGTGGAGATGGCGTTCCTTTCAGA AGAGGGATTGGCGAGCCACACCACCAGACCGCCAGACCTCGGTGAGGGAA GTCGACCTCTGACCTTTGAGCTGGTCGGTTGTCGGTCGGACCGCTGTGCC CCCCCCTGTGTTGCGTTGTTTTGCAAGTTTTAACGAATTTTGATTTTCTT CAAAACGTCAGCTGTAAACTGCGCGTCCGTCCTGTGAATACGTCGTGGTT CCGGGGGGGCTACTGTATCACGCTACAACCCTATTCATCGTTGGAGTGTG TACACCCAGATCAATGCCTAGGCCACTATTTACTTGCGGCCGAACTTTTG TCCTGTGTCCCCTGATGTCGGTGCAGGAGCTGATAGAGAGGATCAACCAA CACCCGGACGACTTTTTGAGGCTCATGAACGAGCCGCCCGATGCGGCGGG GCAGGCCATGATGGACATGGGGTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10007:230..4604-

>mRNA_S-firma_F_contig10007.69.1 ID=mRNA_S-firma_F_contig10007.69.1|Name=mRNA_S-firma_F_contig10007.69.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1902bp|location=Sequence derived from alignment at S-firma_F_contig10007:230..4604- (Sphaerotrichia firma ET2_F female)
ATGTCGAGATCTCTGCTGGTGAAGACGATCAAGGGGGAGGCCTTCCGAGT
AGACGTGGCCGAAGAGTGTAAGATGTCGAGATCTCTGCTGGTGAAGACGA
TCAAGGGGGAGGCCTTCCGAGTAGACGTGGCCGAAGAGTGTAAGATGAGC
GACGTAAAGGCGAAGATCTCGGAGGTCCGGGGCGACGACCCCGCTAGCCA
GCAGCTCATCTGCGGCGGAAAAATGCTCAAGGACGACGACGCCCTCGCCA
CCGGCGTGCCCGCCGGCGGCTTCCTGGTCCTCATGGTCAAGAAGATGAGC
GACGTAAAGGCGAAGATCTCGGAGGTCCGGGGCGACGACCCCGCTAGCCA
GCAGCTCATCTGCGGCGGAAAAATGCTCAAGGACGACGACGCCCTCGCCA
CCGGCGTGCCCGCCGGCGGCTTCCTGGTCCTCATGGTCAAGAAGCGACGG
GCCGCCCCGGCAGTACCGGCCGCTTCGGCACCCGCTGCTGCCGCCGCTCC
TGTCCCAGCTCCCACTCCTGCTGCTGCTGCTGCTGCCGCCGCACCCCCTG
CCCCGGTGGCAGCAGCAGCAGCAGCAGCAGCTACACCCGCAGCTACACCC
GCCTCTGCGCCCGCTCCTTCGCCACCACCACCAGCGGCGGCGGGGGCCGG
GGCCGGGGCCGGAGCTGCGGCCGGCGGCGGGGGCGGGGGCGACGGTCTTG
CGGTAGACCCCGCCAGCGTGGAAATGCTGACGGCGATGGGCTTCCCCGAG
GACCAGCGACGGGCCGCCCCGGCAGTACCGGCCGCTTCGGCACCCGCTGC
TGCCGCCGCTCCTGTCCCAGCTCCCACTCCTGCTGCTGCTGCTGCTGCCG
CCGCACCCCCTGCCCCGGTGGCAGCAGCAGCAGCAGCAGCAGCTACACCC
GCAGCTACACCCGCCTCTGCGCCCGCTCCTTCGCCACCACCACCAGCGGC
GGCGGGGGCCGGGGCCGGGGCCGGAGCTGCGGCCGGCGGCGGGGGCGGGG
GCGACGGTCTTGCGGTAGACCCCGCCAGCGTGGAAATGCTGACGGCGATG
GGCTTCCCCGAGGACCAGGCAACGGCAGCTCTGCGGGCGGCATTCAACGA
CGTGAGCAGGGCGGCGAGCTACCTCATGGAAGGCATCCCCGACGACGTCG
TGGCGGCGGGCAACGGCAGCTCTGCGGGCGGCATTCAACGACGTGAGCAG
GGCGGCGAGCTACCTCATGGAAGGCATCCCCGACGACGTCGTGGCGGCGG
GAGCAGGAGTCCGACAACAGGGCGGCGACGATGCGATGGGCGGGGCAGAC
GCGGAAGACGGGGGGGCCGCGGACCTGGCCGAGGCGCTGATGGAGATGCA
GGGGGGCGAGGGGAACCCACTCAACTTCATGAGATTCCACCCGCAGTTCG
ACCAGGAGCAGGAGTCCGACAACAGGGCGGCGACGATGCGATGGGCGGGG
CAGACGCGGAAGACGGGGGGGCCGCGGACCTGGCCGAGGCGCTGATGGAG
ATGCAGGGGGGCGAGGGGAACCCACTCAACTTCATGAGATTCCACCCGCA
GTTCGACCAGCTCCGAAATCTGGTGCGAGAGAACCCGGCGATGCTTCCCC
AGGTGCTCCAGGGGCTGGCGAACCAAAGCCCGCTCCGAAATCTGGTGCGA
GAGAACCCGGCGATGCTTCCCCAGGTGCTCCAGGGGCTGGCGAACCAAAG
CCCGGAGCTGATAGAGAGGATCAACCAACACCCGGACGACTTTTTGAGGC
TCATGAACGAGCCGCCCGATGCGGCGGGGCAGGCCATGATGGACATGGGG
TAGGAGCTGATAGAGAGGATCAACCAACACCCGGACGACTTTTTGAGGCT
CATGAACGAGCCGCCCGATGCGGCGGGGCAGGCCATGATGGACATGGGGT
AG
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