mRNA_S-firma_F_contig10007.69.1 (mRNA) Sphaerotrichia firma ET2_F female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_S-firma_F_contig10007.69.1 vs. uniprot
Match: A0A6H5KET6_9PHAE (UV excision repair protein RAD23 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KET6_9PHAE) HSP 1 Score: 280 bits (715), Expect = 1.850e-88 Identity = 234/339 (69.03%), Postives = 249/339 (73.45%), Query Frame = 2 Query: 8 MSRSLLVKTIKGEAFRVDVAEECKMSDVKAKISEVRGDDPASQQLICGGKMLKDDDALATGVPAGGFLVLMVKKRRAAPAVPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAVDPASVEMLTAMGFPEDQATAALRAAFNDVSRAASYLMEGIPDDVVAAGAGVRQQGGDDAMGGADAEDGG-----------------------AADLAEALMEMQGGEGNPLNFMRFHPQFDQLRNLVRENPAMLPQVLQGLANQSPELIERINQHPDDFLRLMNEPPDAAGQAMMDMG 955 M+RSL VKT+KGE FR+DVAEE MSDVKAKI+EVRG DPA+Q LICGGK LKD D+LA V AGGFLVLMVK RRA P AA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX L+VDP +V+MLTAMGFP DQATAALRAAFNDVSRAASYLMEGIP + AGAG GG DA AA LA+ALM M+ GEGNPLNFMRFHPQFD+LR LVRENPAMLPQVLQ LA QSPELI RINQHPD FLRLMNEPPDA GQA+M+MG Sbjct: 1 MTRSLTVKTLKGEVFRIDVAEESVMSDVKAKIAEVRGHDPATQVLICGGKTLKDGDSLADSVAAGGFLVLMVK-RRANPVANAAPTPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGANET---------LSVDPTNVDMLTAMGFPADQATAALRAAFNDVSRAASYLMEGIPHN---AGAGT---------GGGDARXXXXXXXXXXXXXXXXXXXXXEXXXXAAGLAQALMGMEAGEGNPLNFMRFHPQFDELRGLVRENPAMLPQVLQALATQSPELIGRINQHPDAFLRLMNEPPDAEGQAIMEMG 317
BLAST of mRNA_S-firma_F_contig10007.69.1 vs. uniprot
Match: A0A836CLA0_9STRA (UV excision repair protein RAD23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLA0_9STRA) HSP 1 Score: 109 bits (272), Expect = 8.570e-25 Identity = 68/150 (45.33%), Postives = 88/150 (58.67%), Query Frame = 2 Query: 521 MGFPEDQATAALRAAFNDVSRAASYLMEGIPD----DVVAAGAGVRQQGGD--------DAMGGADAEDGGAADLAEALMEMQGGEGNPLNFMRFHPQFDQLRNLVRENPAMLPQVLQGLANQSPELIERINQHPDDFLRLMNEPPDAAG 934 MGFPEDQ AAL+AAFN++ AA+YLM G+PD D A + G D + G + G AD EA +GG NPL +R+HPQF +LR LV+ NPA LP+++QG+ QSPEL+ IN HP F++LMN D G Sbjct: 1 MGFPEDQVRAALQAAFNNLEVAANYLMTGLPDFAAPDFEAHQPNIETSGVGGTVGIVPADILSGPMGDTLGDADDMEAAQGFEGG-ANPLAALRYHPQFLELRELVQSNPAALPEIIQGIGEQSPELLNMINAHPQAFVQLMNSTGDDLG 149
BLAST of mRNA_S-firma_F_contig10007.69.1 vs. uniprot
Match: A0A1Y1XXG2_9FUNG (UV excision repair protein RAD23 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XXG2_9FUNG) HSP 1 Score: 102 bits (255), Expect = 3.170e-21 Identity = 130/312 (41.67%), Postives = 178/312 (57.05%), Query Frame = 2 Query: 26 VKTIKGEAFRVDVAEECKMSDVKAKISEVRGDDPASQQLICGGKMLKDDDALAT-GVPAGGFLVLMVKKRRAAPAVPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAVDP---ASVEMLTAMGFPEDQATAALRAAFNDVSRAASYLMEGIPDDVVA-AGAGVRQQGGDDAMGGADAEDGGAADLAEALMEMQG----------GEGNPLNFMRFHPQFDQLRNLVRENPAMLPQVLQGLANQSPELIERINQHPDDFLRLMNE 916 +KT++ +AF++DV E K+S +K KI + +G + Q+LI GK+L DD +A+ V F+V+MV K +A+PA + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GL P A++ + MGF +Q T ALRA+FN+ RA YLM GIP+ ++ +Q+ + A G +L A + G G L+F+R PQF QLR LV++NPA+L +LQ L +P+L++ IN + D FL+L++E Sbjct: 5 IKTLQQKAFQIDVEPEDKISTLKEKIEQSQGHQVSHQKLIFSGKILNDDQTVASCNVTEKDFMVVMVSKPKASPAAAKSPAPATPAVTAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGWESGN-----------GLVTGPEYEAAINNMIEMGFEREQVTKALRASFNNPERAVEYLMNGIPEHLLGNTQQPAQQEAHTPSQVPASPASGQPQNLFTAAAQQAAQERGAQPQATGGGGDLSFLRSQPQFQQLRQLVQQNPALLQPLLQQLGQANPQLLQLINANQDTFLQLLSE 305
BLAST of mRNA_S-firma_F_contig10007.69.1 vs. uniprot
Match: A0A1V9XA41_9ACAR (UV excision repair protein RAD23 n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9XA41_9ACAR) HSP 1 Score: 102 bits (253), Expect = 3.850e-21 Identity = 104/320 (32.50%), Postives = 150/320 (46.88%), Query Frame = 2 Query: 8 MSRSLLVKTIKGEAFRVDVAEECKMSDVKAKISEVRGD--DPASQQLICGGKMLKDDDAL-ATGVPAGGFLVLMVKKRRAAPAVPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAVDPAS-VEMLTAMGFPEDQATAALRAAFNDVSRAASYLMEGIPDDVVAAGAGVRQQGGDDAMGGADAEDGGAADLAEALMEMQGGEGNPLNFMRFHPQFDQLRNLVRENPAMLPQVLQGLANQSPELIERINQHPDDFLRLMNEPPDAAGQAMMDMG 955 M ++ +K + E F +++ +EC + ++KAKI E +GD A Q+LI G+++ DD+ L A + F+V+MV K APA P XXXXXXXXXXXXXX VD S V +T MG+P DQ ALRA++N+ RA YL+ GIP + GV A GGA A QG E PL+F+R PQF Q+RN +RENPA+L ++Q L + +P+++ I Q+ D+F+ L+NE + + +G Sbjct: 1 MLLTVSLKCLTNELFTIEIDDECTVKEMKAKIYEQKGDAFPAAHQKLIAQGRIMADDEKLKAYELHNVKFVVIMVSKPAPAPAAPPGGAQAASKVTPPAPAETPASTDNXXXXXXXXXXXXXXTPNAATGESALVR--------------------------GVDYESMVRNITEMGYPRDQVERALRASYNNPDRAVEYLVTGIPPEEDEPQIGVNLP----ATGGA------GTVTAPGGPPGQGSEP-PLSFLRTQPQFQQMRNAIRENPALLESIIQQLGSNNPDMLRLITQNQDEFMHLLNEEDGRGEEPLAALG 283
BLAST of mRNA_S-firma_F_contig10007.69.1 vs. uniprot
Match: A0A7M7J9X3_VARDE (UV excision repair protein RAD23 n=2 Tax=Varroa destructor TaxID=109461 RepID=A0A7M7J9X3_VARDE) HSP 1 Score: 101 bits (251), Expect = 8.510e-21 Identity = 86/316 (27.22%), Postives = 129/316 (40.82%), Query Frame = 2 Query: 8 MSRSLLVKTIKGEAFRVDVAEECKMSDVKAKISEVRGD--DPASQQLICGGKMLKDDDALAT-GVPAGGFLVLMVKKRRAAPAVPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAVDPASVEMLTAMGFPEDQATAALRAAFNDVSRAASYLMEGIP--DDVVAAGAGVRQQGGDDAMGGADAEDGGAADLAEALMEMQGGEGNPLNFMRFHPQFDQLRNLVRENPAMLPQVLQGLANQSPELIERINQHPDDFLRLMNEPPDAAGQA 940 M ++ +K + E F V++ +EC + ++K KI E +G+ A Q+LI G+++ DDD L T + F+V+MV K AP P +V + MG+P DQ ALRA++N+ RA YL+ GIP +D A G V GG QGGE + LNF+R PQF Q+RN +RENP +L ++Q L +P+L+ I ++ +F+RL+NE D G+A Sbjct: 1 MLLTVSLKCLTNELFTVEIDDECTVKEMKEKIFEQKGEAFPAAHQKLIAQGRIMADDDKLKTYELDKVKFVVIMVSKPAPAPVAPPGGAMAAPKPAPPDAPESPLNRDEPSRDTPTPTRPSNPTPNAATGESGLVRSDNYD-------------------------GTVRNIMEMGYPRDQVERALRASYNNAERAVEYLVTGIPVEEDEPAVGVNVPATGGVXXXX--------XXXXXXXXXXSQGGEPH-LNFLRSQPQFQQMRNAIRENPTLLESIIQQLGANNPDLLRLITENQAEFMRLLNEEDDEVGEA 282
BLAST of mRNA_S-firma_F_contig10007.69.1 vs. uniprot
Match: L8GWS2_ACACA (UV excision repair protein RAD23 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GWS2_ACACA) HSP 1 Score: 101 bits (251), Expect = 1.400e-20 Identity = 117/321 (36.45%), Postives = 160/321 (49.84%), Query Frame = 2 Query: 26 VKTIKGEAFRVDVAEECKMSDVKAKISEVRGDDPASQQLICGGKMLKDDDALAT-GVPAGGFLVLMVKKRR----AAPAVPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAVDPASVEMLTAMGFPEDQATAALRAAFNDVSRAASYLMEGIPDDVVAAGAG-VRQQGGDDAMGGADAED--------------GGAA---DLAEALMEMQGGEGNPLNFMRFHPQFDQLRNLVRENPAMLPQVLQGLANQSPELIERINQHPDDFLRLMNEP 919 +KTI+ + F V+V + + DVK K+ +R ++ A Q+LI GK+L DD + T + FLVLMV+K + AAPA PAA XXXXX XXXXXXXXXXXXXXXXXX A V + MGFP ++ ALRA+FN+ +RA YLM GIPD A A ++ A GG A GG + +L ALM QGG G ++R HPQF+Q++ +V+ NP +L +LQ L +P++++ I QH +F+ L+NEP Sbjct: 6 IKTIQQQQFEVEVPDTATVLDVKKKVEALRSENVAWQKLIFAGKILADDAKINTLNIKPTEFLVLMVRKPKEANVAAPA-PAAQPAXXXXXAQPTQTXXXXXXXXXXXXXXXXXXPSSGGSIESEAASALVTGSDFE-------------------------AMVSNIMEMGFPREEVLRALRASFNNPNRAVEYLMTGIPDMPAQAPASPAAERAAAPAAGGEGAXXXXXXXXXXXXXXXXGGISLPSNLLGALMGQQGGAGGHFEWLRQHPQFNQIKAMVQRNPQLLGPLLQQLGQLNPQILQMIGQHQAEFMALLNEP 300
BLAST of mRNA_S-firma_F_contig10007.69.1 vs. uniprot
Match: UPI001425B0E0 (UV excision repair protein RAD23 homolog B-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425B0E0) HSP 1 Score: 98.6 bits (244), Expect = 1.610e-19 Identity = 137/334 (41.02%), Postives = 183/334 (54.79%), Query Frame = 2 Query: 20 LLVKTIKGEAFRVDVAEECKMSDVKAKISEVRGDD--PAS-QQLICGGKMLKDDDALAT-GVPAGGFLVLMVKKRRAA--PAVPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGL------AVDPASVEMLTAMGFPEDQATAALRAAFNDVSRAASYLMEGIPDDVVA---AGAGVRQQGGDDAMGGAD-----------AEDGG---AADLAEALMEMQGGEGNPLNFMRFHPQFDQLRNLVRENPAMLPQVLQGLANQSPELIERINQHPDDFLRLMNEPPDAAG 934 + +KT++ F++++ E C + ++K KI +G + PA+ Q+LI GK+L DD L + F+V+MV K +A+ PA P AS XXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXX A V L AMGF D+ T ALRA+FN+ RA YL+ GIP+ V A A +Q A AD A GG A A+ + +PL F+R P+F Q+R+++R+NP +LP +LQ L +P L++ IN+H F+ L+NEP + G Sbjct: 3 ITIKTLQQVTFQIEIDETCSVKELKEKIESEKGSEGFPANGQKLIYAGKILSDDSQLKEYNIVPANFVVVMVTKAKASSVPAKPPASTTPAXXXXXXXXXXXXXXXXXXXXXXXDSNXXXXXXXXXXXXXXXXXXXXXXSEATDAPADIEGASASALSQAESALVIGAEYEQMVSQLMAMGFGRDKVTLALRASFNNPDRATEYLLSGIPESVTREMNAAAEAQQAAVQGAQPAADQPPXXXXXXXPASTGGQPAAVPPAQIPGQEASSAEDPLGFLRLQPEFQQMRHMLRQNPHLLPALLQQLGQSNPPLLQLINRHQQSFIELLNEPEGSGG 336
BLAST of mRNA_S-firma_F_contig10007.69.1 vs. uniprot
Match: A0A7S3P0B9_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P0B9_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 5.920e-19 Identity = 148/300 (49.33%), Postives = 183/300 (61.00%), Query Frame = 2 Query: 26 VKTIKGEAFRVDVAEECKMSDVKAKISEVRGDDPA-SQQLICGGKMLKDDDALAT-GVPAGGFLVLMVKKRRAAPAVPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAVDPASVEMLTAMGFPEDQATAALRAAFNDVSRAASYLMEGIPDDVVAAGAGVRQQGGDDAMGGADAEDGGAADLAEALMEMQGGEGNPLNFMRFHPQFDQLRNLVRENPAMLPQVLQGLANQSPELIERINQHPDDFLRLMNEP 919 VKT+ G F ++ + ++ VK I + PA S +LI GK+LKD+D L+T G+ FLV+M+ K++AAP PA XXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A+ A+VE L MGFPE+ +R A + A +L GIP+ + A +GG A GG A PL +R HPQF+ LR LV+ NP ML QVL + Q P+L++ IN + FL++MNEP Sbjct: 5 VKTLTGRKFPIEADDSSTVAAVKGIIEAANAELPAASMKLIHSGKVLKDEDILSTVGIKENDFLVVMITKKKAAPKTPAPQXXXXXXXXXXXXXXXXXXXXXXXXXAASTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP----AISDAAVENLVGMGFPEEAVRHCMRVAQGNPDLAVEFLTNGIPEGMEQAMQAAAARGGT-----TPASSGGTASTT----------AQPLQALRNHPQFNDLRRLVQSNPQMLQQVLTQIGQQQPDLLQEINANQALFLQMMNEP 285
BLAST of mRNA_S-firma_F_contig10007.69.1 vs. uniprot
Match: A0A6P7JCC0_9TELE (UV excision repair protein RAD23 n=1 Tax=Parambassis ranga TaxID=210632 RepID=A0A6P7JCC0_9TELE) HSP 1 Score: 95.9 bits (237), Expect = 1.040e-18 Identity = 113/309 (36.57%), Postives = 161/309 (52.10%), Query Frame = 2 Query: 20 LLVKTIKGEAFRVDVAEECKMSDVKAKISEVRGDDP---ASQQLICGGKMLKDDDALAT-GVPAGGFLVLMVKKRRAAPAVPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAVDPASVEMLTAMGFPEDQATAALRAAFNDVSRAASYLMEGIPDDVVAAGAGVRQQGGDDAMGGADA-EDGGAADLAEALMEMQGGEGNPLNFMRFHPQFDQLRNLVRENPAMLPQVLQGLANQSPELIERINQHPDDFLRLMNEP-PDA 928 + +KT++ + F+V++ E+ + +K +I + +G D A +LI GK+L DD AL + F+V+MV K + A A P XXXXXXXXXXXXXXXXXXX XXXXXXXXX G + D EM+ MG+ +Q AALRA+FN+ RA YL+ GIP G G ++ G A GG + A G GNPL+F+R PQF +R L+++N A+LP +LQ + ++PEL+ I+ H + F++++NEP PDA Sbjct: 3 ITLKTLQQQTFKVEIDEDETVKTLKERIEQEKGKDHFSVAGLKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKTASAAPQXXXXXXXXXXXXXXXXXXXXXPAEQXXXXXXXXXKESSTAAEPPSTPVGSSGVSVSTNLINEAVSNLVT-----GPSYDAMVNEMML-MGYEREQVVAALRASFNNPDRAVEYLLTGIPGR--GQGHATGPDGESSSVSGTPALPTGGISIPANTGSSPSAGGGNPLSFLRNQPQFHVMRQLIQQNTALLPALLQEIGRENPELLREISNHQEQFIQMLNEPNPDA 303
BLAST of mRNA_S-firma_F_contig10007.69.1 vs. uniprot
Match: A0A663FJ19_AQUCH (UV excision repair protein RAD23 n=1 Tax=Aquila chrysaetos chrysaetos TaxID=223781 RepID=A0A663FJ19_AQUCH) HSP 1 Score: 95.1 bits (235), Expect = 1.830e-18 Identity = 53/139 (38.13%), Postives = 82/139 (58.99%), Query Frame = 2 Query: 503 VEMLTAMGFPEDQATAALRAAFNDVSRAASYLMEGIPDDVVAAGAGVRQQGGDDAMGGADAEDGGAADLAEALMEMQGGEGNPLNFMRFHPQFDQLRNLVRENPAMLPQVLQGLANQSPELIERINQHPDDFLRLMNEP 919 V + +MG+ +Q AALRA+FN+ RA YL+ GIP+D A G + A GA AA +A M EG+PL F+R PQF Q+R ++++NP++LP +LQ + ++P +I+QH + F+ ++NEP Sbjct: 163 VTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPEDNQAVGEPPQA-----ASTGASQPSAVAAAVATIPMTTSSLEGHPLEFLRHQPQFQQMRQIIQQNPSLLPALLQQIGRENPXXXXQISQHQEHFIHMLNEP 296 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10007.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10007.69.1 >prot_S-firma_F_contig10007.69.1 ID=prot_S-firma_F_contig10007.69.1|Name=mRNA_S-firma_F_contig10007.69.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=317bp MSRSLLVKTIKGEAFRVDVAEECKMSDVKAKISEVRGDDPASQQLICGGKback to top mRNA from alignment at S-firma_F_contig10007:230..4604- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10007.69.1 ID=mRNA_S-firma_F_contig10007.69.1|Name=mRNA_S-firma_F_contig10007.69.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4375bp|location=Sequence derived from alignment at S-firma_F_contig10007:230..4604- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10007:230..4604- >mRNA_S-firma_F_contig10007.69.1 ID=mRNA_S-firma_F_contig10007.69.1|Name=mRNA_S-firma_F_contig10007.69.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1902bp|location=Sequence derived from alignment at S-firma_F_contig10007:230..4604- (Sphaerotrichia firma ET2_F female)back to top |