mRNA_S-firma_F_contig10005.68.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_S-firma_F_contig10005.68.1 vs. uniprot
Match: D7FWJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWJ7_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.960e-23
Identity = 40/61 (65.57%), Postives = 52/61 (85.25%), Query Frame = 1

Query:    1 MADDEISYQSATRDVLLSAAKVIGSECVDVNLAFTKCKAQNSDPEACLKLGSAVLECNNRV 183
            M ++++ + SATRDVL+S AK++GS CVD NLAFTKCKA+NSDPEAC+KLG AVLEC ++ 
Sbjct:    1 MGEEDMPFPSATRDVLISTAKLLGSSCVDENLAFTKCKAENSDPEACMKLGVAVLECTSKA 61

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BLAST of mRNA_S-firma_F_contig10005.68.1 vs. uniprot
Match: K3WSU2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSU2_GLOUD)

HSP 1 Score: 55.1 bits (131), Expect = 3.300e-8
Identity = 27/58 (46.55%), Postives = 36/58 (62.07%), Query Frame = 1

Query:    1 MADDEISYQSATRDVLLS-AAKVIGSECVDVNLAFTKCKAQNSDPEACLKLGSAVLEC 171
            MAD   +   +T +  L+ AA+V+G EC D NLAF +CK +N+DP ACL  G  V  C
Sbjct:    1 MADAATNTLPSTDNTSLTCAARVLGFECADANLAFLRCKQENADPRACLAQGEKVTAC 58

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BLAST of mRNA_S-firma_F_contig10005.68.1 vs. uniprot
Match: A0A5D6YII0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YII0_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.400e-6
Identity = 22/42 (52.38%), Postives = 27/42 (64.29%), Query Frame = 1

Query:   46 LLSAAKVIGSECVDVNLAFTKCKAQNSDPEACLKLGSAVLEC 171
            L  AA+V+G EC D NLAF +CK  ++DP ACL  G  V  C
Sbjct:  102 LTCAARVLGYECADPNLAFLRCKQADADPRACLAQGEKVTAC 143

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BLAST of mRNA_S-firma_F_contig10005.68.1 vs. uniprot
Match: A0A6L2NXU0_TANCI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2NXU0_TANCI)

HSP 1 Score: 47.4 bits (111), Expect = 2.860e-5
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 1

Query:   34 TRDVLLSAAKVIGSECVDVNLAFTKCKAQNSDPEACLKLGSAVLEC 171
            T  VL+SA+K I + C   N+AF KCK  +S+PE CL+ G  V  C
Sbjct:   11 TSAVLMSASKHIATRCRGENVAFLKCKKDDSNPEKCLEKGRQVTRC 56

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BLAST of mRNA_S-firma_F_contig10005.68.1 vs. uniprot
Match: S8DNJ9_FOMPI (NADH-ubiquinone oxidoreductase n=5 Tax=Fomitopsidaceae TaxID=1769247 RepID=S8DNJ9_FOMPI)

HSP 1 Score: 47.4 bits (111), Expect = 6.840e-5
Identity = 24/53 (45.28%), Postives = 29/53 (54.72%), Query Frame = 1

Query:   13 EISYQSATRDVLLSAAKVIGSECVDVNLAFTKCKAQNSDPEACLKLGSAVLEC 171
            ++    AT   L SAA  +G+ C D N  F  CKA+N DPE CLK G  V  C
Sbjct:   27 KVQELGATSAPLKSAAFFLGAYCKDYNEDFMLCKAENRDPEHCLKEGRRVTRC 79

The following BLAST results are available for this feature:

BLAST of mRNA_S-firma_F_contig10005.68.1 vs. uniprot

BLAST of mRNA_S-firma_F_contig10005.68.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 5

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
D7FWJ7_ECTSI	1.960e-23	65.57	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
K3WSU2_GLOUD	3.300e-8	46.55	Uncharacterized protein n=1 Tax=Globisporangium ul...	[more]
A0A5D6YII0_9STRA	8.400e-6	52.38	Uncharacterized protein n=1 Tax=Pythium brassicum ...	[more]
A0A6L2NXU0_TANCI	2.860e-5	47.83	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex...	[more]
S8DNJ9_FOMPI	6.840e-5	45.28	NADH-ubiquinone oxidoreductase n=5 Tax=Fomitopsida...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-firma_F_contig10005	contig	S-firma_F_contig10005:3696..4218 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at S-firma_F_contig10005:3696..4218-
coding sequence from alignment at S-firma_F_contig10005:3696..4218-

protein sequence of mRNA_S-firma_F_contig10005.68.1

>prot_S-firma_F_contig10005.68.1 ID=prot_S-firma_F_contig10005.68.1|Name=mRNA_S-firma_F_contig10005.68.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=62bp
MADDEISYQSATRDVLLSAAKVIGSECVDVNLAFTKCKAQNSDPEACLKL
GSAVLECNNRV*

mRNA from alignment at S-firma_F_contig10005:3696..4218-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_S-firma_F_contig10005.68.1 ID=mRNA_S-firma_F_contig10005.68.1|Name=mRNA_S-firma_F_contig10005.68.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=523bp|location=Sequence derived from alignment at S-firma_F_contig10005:3696..4218- (Sphaerotrichia firma ET2_F female)
ATGGCTGACGACGAGATTAGCTACCAGTCGGCAACGAGAGATGTCCTCCT
TTCCGCGGCAAAAGTGATAGGTAAGGAGGGGTCATAAGTGTTGGGCGCTG
GTAGACGTGTAGGGGGTTTCATAGCCAACACGATGGCGTTTCGATTATGT
CAAGTGCACACGTGGACGAGTCGTACACGCAGAATCGCTGGGACTGCTGT
TTGTATGTACTTCTTCTGTTGTACTTGGCAGTTGTGTTAGTGTCTGTTTT
TCTGTCTTCTCCGGGTGAAGGCAGATTTATCTGCGCTCACGTTTCTGGCA
CAGCAGCGGTAGTAGTAGCAATAGTAGTATTTTCCTCCCGCTGCTCCCTC
GTGTCGCTCAGTGTGAGCTCATTCCCTTCCTCTCACCGCCATTGTGTTGT
TCGTTAGGCTCGGAATGCGTCGACGTAAACCTCGCGTTCACCAAGTGCAA
AGCCCAAAACTCTGACCCAGAGGCCTGTCTGAAGCTGGGGTCAGCCGTCT
TGGAGTGCAACAACAGAGTGTGA

Coding sequence (CDS) from alignment at S-firma_F_contig10005:3696..4218-

>mRNA_S-firma_F_contig10005.68.1 ID=mRNA_S-firma_F_contig10005.68.1|Name=mRNA_S-firma_F_contig10005.68.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=372bp|location=Sequence derived from alignment at S-firma_F_contig10005:3696..4218- (Sphaerotrichia firma ET2_F female)
ATGGCTGACGACGAGATTAGCTACCAGTCGGCAACGAGAGATGTCCTCCT
TTCCGCGGCAAAAGTGATAGATGGCTGACGACGAGATTAGCTACCAGTCG
GCAACGAGAGATGTCCTCCTTTCCGCGGCAAAAGTGATAGGCTCGGAATG
CGTCGACGTAAACCTCGCGTTCACCAAGTGCAAAGCCCAAAACTCTGACC
CAGAGGCCTGTCTGAAGCTGGGGTCAGCCGTCTTGGAGTGCAACAACAGA
GTGTGAGCTCGGAATGCGTCGACGTAAACCTCGCGTTCACCAAGTGCAAA
GCCCAAAACTCTGACCCAGAGGCCTGTCTGAAGCTGGGGTCAGCCGTCTT
GGAGTGCAACAACAGAGTGTGA