mRNA_S-firma_F_contig10002.66.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10002.66.1
Unique NamemRNA_S-firma_F_contig10002.66.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10002.66.1 vs. uniprot
Match: A0A6H5KH57_9PHAE (Kinesin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KH57_9PHAE)

HSP 1 Score: 285 bits (729), Expect = 8.110e-84
Identity = 187/291 (64.26%), Postives = 215/291 (73.88%), Query Frame = 1 
Query:    1 AKEAEALELSEECDTLSAELERAGAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGKATEAQLRHRLTSQVAEAENLRQELMDTRERLDQAEAAVRASEQRAREGADEKTKKLLLEMENLCQEKLLAENKAGDMEEELVQLRNEVATAEQTAARDQSLIIKATEERIAVLDQAAEEKDVAIAELQAALDTARLSASSASPEIAAADAKTAIEAATEVFNAEIAALTAAVDEYKETIKKQDARIKKLEQVRLTNGQVEKLQAMKASAKKTAAENAELKQRLALLKERLE 873
            A EA + ELS+EC+  SAE+E     A                             AAGKATE QLRHRLTSQVAEAENLRQELMDTRER D+AEAAVRAS+QRARE ADEKTK LL EMENLCQEKL+AENKAG+ME EL +LR  VATAEQTAA+DQ ++I+A EER+AVLDQAA++KD+AIA+LQA+LD AR SA++ S               T   N ++AALTAA DE KETI +QDARIKKLEQVRLTNGQVEKLQAMKASA++TAAEN ELKQRL++LKERLE
Sbjct: 2210 AMEAASKELSKECEARSAEVESVRKSAAEVAEELDVARGRKEDLERELADNV----AAGKATEQQLRHRLTSQVAEAENLRQELMDTRERSDRAEAAVRASDQRARESADEKTKGLLAEMENLCQEKLIAENKAGEMEAELSRLREAVATAEQTAAKDQGMLIRAAEERMAVLDQAAQDKDIAIAKLQASLDAARASAAAESXXXXXXX----XXXXTAALNDKVAALTAATDEQKETIARQDARIKKLEQVRLTNGQVEKLQAMKASARRTAAENTELKQRLSVLKERLE 2492
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10002.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KH57_9PHAE8.110e-8464.26Kinesin motor domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10002contigS-firma_F_contig10002:1911..4478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FIN0
PFAMsKinesin
Max annot lvl2759|Eukaryota
KEGG koko:K11498
GOsGO:0000226,GO:0000278,GO:0000280,GO:0000775,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005856,GO:0005871,GO:0005875,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007051,GO:0007052,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022607,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043515,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044446,GO:0044464,GO:0044877,GO:0048285,GO:0051225,GO:0070925,GO:0071840,GO:0090307,GO:0098687,GO:0140014,GO:1902850,GO:1903047
Evalue3.06e-79
EggNOG OGsCOG5059@1|root,KOG0242@2759|Eukaryota
Descriptionmicrotubule motor activity
COG categoryZ
BRITEko00000,ko01009,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size901
Cds size897
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10002.66.1prot_S-firma_F_contig10002.66.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10002 1913..4478 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815524.3513634-CDS-S-firma_F_contig10002:1912..22841622815524.3513634-CDS-S-firma_F_contig10002:1912..2284Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10002 1913..2284 -
1696949386.8644829-CDS-S-firma_F_contig10002:1912..22841696949386.8644829-CDS-S-firma_F_contig10002:1912..2284Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10002 1913..2284 -
1622815524.360885-CDS-S-firma_F_contig10002:2605..27551622815524.360885-CDS-S-firma_F_contig10002:2605..2755Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10002 2606..2755 -
1696949386.8859472-CDS-S-firma_F_contig10002:2605..27551696949386.8859472-CDS-S-firma_F_contig10002:2605..2755Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10002 2606..2755 -
1622815524.370072-CDS-S-firma_F_contig10002:3575..37761622815524.370072-CDS-S-firma_F_contig10002:3575..3776Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10002 3576..3776 -
1696949386.8950477-CDS-S-firma_F_contig10002:3575..37761696949386.8950477-CDS-S-firma_F_contig10002:3575..3776Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10002 3576..3776 -
1622815524.379429-CDS-S-firma_F_contig10002:4304..44781622815524.379429-CDS-S-firma_F_contig10002:4304..4478Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10002 4305..4478 -
1696949386.911444-CDS-S-firma_F_contig10002:4304..44781696949386.911444-CDS-S-firma_F_contig10002:4304..4478Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10002 4305..4478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10002.66.1

>prot_S-firma_F_contig10002.66.1 ID=prot_S-firma_F_contig10002.66.1|Name=mRNA_S-firma_F_contig10002.66.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=299bp
AKEAEALELSEECDTLSAELERAGAEAGAAAGGLEEKLRAAEEAREAVEE
ALSEAVAAGKATEAQLRHRLTSQVAEAENLRQELMDTRERLDQAEAAVRA
SEQRAREGADEKTKKLLLEMENLCQEKLLAENKAGDMEEELVQLRNEVAT
AEQTAARDQSLIIKATEERIAVLDQAAEEKDVAIAELQAALDTARLSASS
ASPEIAAADAKTAIEAATEVFNAEIAALTAAVDEYKETIKKQDARIKKLE
QVRLTNGQVEKLQAMKASAKKTAAENAELKQRLALLKERLELKQRLEAT
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mRNA from alignment at S-firma_F_contig10002:1911..4478-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10002.66.1 ID=mRNA_S-firma_F_contig10002.66.1|Name=mRNA_S-firma_F_contig10002.66.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2568bp|location=Sequence derived from alignment at S-firma_F_contig10002:1911..4478- (Sphaerotrichia firma ET2_F female)
GCGAAGGAGGCGGAGGCGCTGGAGCTGTCGGAGGAGTGCGACACGCTGTC
GGCGGAGCTGGAGCGCGCCGGCGCGGAGGCCGGCGCCGCGGCGGGCGGCC
TCGAGGAGAAGCTTCGGGCCGCGGAGGAGGCCAGGGAGGCGGTGGAGGAG
GCGCTTTCGGAGGCGGTGGCGGCGGTGAGGTTATTTTTTATTTTGTTTTT
TCGGTTCTGTGTTTGTTTCTATTTATTTATTTATTTTTTTGCGCTTTGGG
GGGCTCGCGGTTGCCGTTGCGTTTTGGGGGGGGGGGGTCGGGTGCGGGAG
GTGGGGGTGGAGCCTGCCTGTCGCAGGACGAGAGGAGGGGGCGCAGTGTT
TGTTTTGGGTGTGTTGGTTTCTCGAGGGCACCCGCAGACAGGGACTTCCT
TGCGCCAAAAGCGTTGTCTCCTTGACGTGAACTGCTGTTCGGAAGCCACC
GCACTCTCTGTTGTAGCCTTGTTTTCTGTTGCTTCCAATTTTGAGCTGCT
GCCGCCACGGAGACACGTTGTTGTTGTTGTTGTTGTTGCCGTCGTCGTCG
TGTCCAAAGCGAAAACAAGACTCGCAAGAGCAAACCGCTCCCCAGACAAC
TCAACACCCCAGCCACACGAACGACTTACGATACTAGACTACTCCTTTTT
CTCCTCGCCCCTTTTGCCCCGCCCCTCCTGTCTCCCGCACCAACCACGAC
AGGGCAAGGCCACCGAGGCACAGCTACGCCACCGCCTTACGTCCCAGGTG
GCCGAGGCGGAGAACCTTCGGCAGGAGCTGATGGACACCCGCGAGCGGTT
GGACCAGGCGGAGGCGGCGGTACGCGCGTCGGAGCAGCGCGCGAGGGAAG
GGGCGGACGAGAAGACCAAGAAGCTGCTCCTGGAGATGGAGAACCTTTGC
CAGGTTGGTGTCTGTGTGTTTTGTGTGTGTGTGTTTGCGTCTGTGTCTGT
GTGTGTGTGTGTTTTTTTTTTTTTTTTTGCCCAATGCTCGACCTTGTCGG
GCGCGGTTTCTTGCCCTTCAAGGGTTTGGCGGTGTAATGACCGAAAGAAA
CCACGCTGGCTTGCTGCCGTGGTGCTTCCTTCGTGTGCGATGCGTGCCTT
TCTCTGGCGCGCTCCAGCCGCCCACATGCACCAGAATTCTACCCTCCGTC
TACGAGAGGATAGTCCGGGGCGATGCTGTGCCGTCGTGAAAAACCTGCTA
AATGCTTCTAGCTTTGCCTCCTACGAGGAAGCGCGGCGCTACAGAGTACT
CCCGGTGCTCGAACGCCACCTTATCTTCTCGTACATGCGCCTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCCTTTTTTTTTTTT
TCTCCCCACAAAAAATATTTCCCCCCACCATTTTTTTCCTTTCTTATTTA
CTCTCTTGNNNNNNNNNNCTACGAGGGAGGGCGGCGGTGCAGTGTTCTCC
CGGTGCTAAAACGCCACTTTATCTTCTTGTACTTGCCTCTTTTTTTTTTT
TTTTTTTATATATCTATCCTACGTGCAGCGCAAACGTATGATCCAGCGCA
CCACAAAGAGTTTCACCCCCAACTCTGTGGGCGCGTTCATGATGCCCGAG
CTGCGACGGTACCCGCTGTCGTGGTCCTTGGATAGTCAGTCTCTCCGGCC
CAAGTCTCCGCGCTGGAACATGAAACAACAACGATTCGTCCTTCCCTGTC
TCGCTCTGGTTTGCCTTCGCCAGGAGAAGCTGCTCGCCGAGAACAAGGCC
GGGGACATGGAGGAGGAGCTGGTACAGCTGCGGAACGAGGTTGCCACCGC
CGAACAGACGGCGGCGAGGGACCAGAGCTTAATCATCAAAGCCACCGAGG
AGCGCATAGCTGTTCTTGACCAGGTACAGGCCGGTGCTTTCGTGTGTAGA
TTTTTTTTTTTTTTTGCGTTCGGCATGTGTGTGTGTCCGGTTGCGAGTAA
GGTGGACATGGTGACGTCCGCGGGTGGTATCTAACGGTGTGCGCTTCTCT
GAGGCACTCGTCGACTATGCAGATGTGGGCACTGTTATAGAGCTCCTCCT
GCGTTCGGCAGCTTTCCGTCTTTCCCCAGATACCACTGCTGTGCCTCACA
ACAACACCAGCCGACTCTGGCACCGCGCTCCTTGTTGTCGCGTTCGCGAA
CCCCCTGCCACGCCACCGCTCCACGCAAAAACACCCAAACACAGGCCGCC
GAGGAGAAGGACGTCGCCATCGCCGAGCTCCAGGCGGCCCTGGACACCGC
TCGACTGTCGGCATCTTCGGCGTCTCCGGAGATCGCGGCGGCCGACGCGA
AGACGGCCATCGAGGCGGCCACCGAGGTCTTCAACGCCGAGATCGCCGCC
CTGACGGCCGCGGTCGACGAGTACAAGGAGACCATCAAGAAGCAGGACGC
CCGCATCAAGAAGCTCGAGCAGGTGCGCCTCACCAACGGGCAGGTGGAGA
AGCTGCAGGCCATGAAGGCCTCGGCCAAGAAGACCGCCGCCGAGAACGCC
GAGCTCAAGCAGCGCCTGGCGCTCCTCAAGGAGCGCCTCGAGCTCAAGCA
GCGCCTCGAGGCCACCCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10002:1911..4478-

>mRNA_S-firma_F_contig10002.66.1 ID=mRNA_S-firma_F_contig10002.66.1|Name=mRNA_S-firma_F_contig10002.66.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1794bp|location=Sequence derived from alignment at S-firma_F_contig10002:1911..4478- (Sphaerotrichia firma ET2_F female)
GCGAAGGAGGCGGAGGCGCTGGAGCTGTCGGAGGAGTGCGACACGCTGTC
GGCGGAGCTGGAGCGCGCCGGCGCGGAGGCCGGCGCCGCGGCGGGCGGCC
TCGAGGAGAAGCTTCGGGCCGCGGAGGAGGCCAGGGAGGCGGTGGAGGAG
GCGCTTTCGGAGGCGGTGGCGGCGGCGAAGGAGGCGGAGGCGCTGGAGCT
GTCGGAGGAGTGCGACACGCTGTCGGCGGAGCTGGAGCGCGCCGGCGCGG
AGGCCGGCGCCGCGGCGGGCGGCCTCGAGGAGAAGCTTCGGGCCGCGGAG
GAGGCCAGGGAGGCGGTGGAGGAGGCGCTTTCGGAGGCGGTGGCGGCGGG
CAAGGCCACCGAGGCACAGCTACGCCACCGCCTTACGTCCCAGGTGGCCG
AGGCGGAGAACCTTCGGCAGGAGCTGATGGACACCCGCGAGCGGTTGGAC
CAGGCGGAGGCGGCGGTACGCGCGTCGGAGCAGCGCGCGAGGGAAGGGGC
GGACGAGAAGACCAAGAAGCTGCTCCTGGAGATGGAGAACCTTTGCCAGG
GCAAGGCCACCGAGGCACAGCTACGCCACCGCCTTACGTCCCAGGTGGCC
GAGGCGGAGAACCTTCGGCAGGAGCTGATGGACACCCGCGAGCGGTTGGA
CCAGGCGGAGGCGGCGGTACGCGCGTCGGAGCAGCGCGCGAGGGAAGGGG
CGGACGAGAAGACCAAGAAGCTGCTCCTGGAGATGGAGAACCTTTGCCAG
GAGAAGCTGCTCGCCGAGAACAAGGCCGGGGACATGGAGGAGGAGCTGGT
ACAGCTGCGGAACGAGGTTGCCACCGCCGAACAGACGGCGGCGAGGGACC
AGAGCTTAATCATCAAAGCCACCGAGGAGCGCATAGCTGTTCTTGACCAG
GAGAAGCTGCTCGCCGAGAACAAGGCCGGGGACATGGAGGAGGAGCTGGT
ACAGCTGCGGAACGAGGTTGCCACCGCCGAACAGACGGCGGCGAGGGACC
AGAGCTTAATCATCAAAGCCACCGAGGAGCGCATAGCTGTTCTTGACCAG
GCCGCCGAGGAGAAGGACGTCGCCATCGCCGAGCTCCAGGCGGCCCTGGA
CACCGCTCGACTGTCGGCATCTTCGGCGTCTCCGGAGATCGCGGCGGCCG
ACGCGAAGACGGCCATCGAGGCGGCCACCGAGGTCTTCAACGCCGAGATC
GCCGCCCTGACGGCCGCGGTCGACGAGTACAAGGAGACCATCAAGAAGCA
GGACGCCCGCATCAAGAAGCTCGAGCAGGTGCGCCTCACCAACGGGCAGG
TGGAGAAGCTGCAGGCCATGAAGGCCTCGGCCAAGAAGACCGCCGCCGAG
AACGCCGAGCTCAAGCAGCGCCTGGCGCTCCTCAAGGAGCGCCTCGAGCT
CAAGCAGCGCCTCGAGGCCACCGCCGCCGAGGAGAAGGACGTCGCCATCG
CCGAGCTCCAGGCGGCCCTGGACACCGCTCGACTGTCGGCATCTTCGGCG
TCTCCGGAGATCGCGGCGGCCGACGCGAAGACGGCCATCGAGGCGGCCAC
CGAGGTCTTCAACGCCGAGATCGCCGCCCTGACGGCCGCGGTCGACGAGT
ACAAGGAGACCATCAAGAAGCAGGACGCCCGCATCAAGAAGCTCGAGCAG
GTGCGCCTCACCAACGGGCAGGTGGAGAAGCTGCAGGCCATGAAGGCCTC
GGCCAAGAAGACCGCCGCCGAGAACGCCGAGCTCAAGCAGCGCCTGGCGC
TCCTCAAGGAGCGCCTCGAGCTCAAGCAGCGCCTCGAGGCCACC
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