mRNA_S-ischiensis_contig1.1165.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1165.1
Unique NamemRNA_S-ischiensis_contig1.1165.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7886938..7888044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1107
Cds size585
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815377.5206833-UTR-S-ischiensis_contig1:7886937..78874591622815377.5206833-UTR-S-ischiensis_contig1:7886937..7887459Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7886938..7887459 +
1695739665.8943107-UTR-S-ischiensis_contig1:7886937..78874591695739665.8943107-UTR-S-ischiensis_contig1:7886937..7887459Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7886938..7887459 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815377.5311215-CDS-S-ischiensis_contig1:7887459..78880441622815377.5311215-CDS-S-ischiensis_contig1:7887459..7888044Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7887460..7888044 +
1695739665.9029136-CDS-S-ischiensis_contig1:7887459..78880441695739665.9029136-CDS-S-ischiensis_contig1:7887459..7888044Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7887460..7888044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1165.1prot_S-ischiensis_contig1.1165.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7887460..7888044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1165.1

>prot_S-ischiensis_contig1.1165.1 ID=prot_S-ischiensis_contig1.1165.1|Name=mRNA_S-ischiensis_contig1.1165.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=195bp
MYFQALLPSICNLAPSTLSARLPPRLVILSLPGHPPAPAHFRSPPTPHPD
SVSRGPPLAKAGSAPRPPALQHSCPHAQAPQVPRPPRVARAAAPPAGAGP
MPAPLRPSPPAPTPLKPPSPLLQLRERQPRHGWSRVLARWQSGAPARPAR
TLPSPPSPILGGPSEAAHGGGSPGFRGHESLWQLQHRQQRRPRRR
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mRNA from alignment at S-ischiensis_contig1:7886938..7888044+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1165.1 ID=mRNA_S-ischiensis_contig1.1165.1|Name=mRNA_S-ischiensis_contig1.1165.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1107bp|location=Sequence derived from alignment at S-ischiensis_contig1:7886938..7888044+ (Schizocladia ischiensis KU_0333)
CCTCCTGCGCCCAGCAACGGGCGGGACGCAGCGGCTGCATTACGTGAGTT
GTCAGCCAAGAGGCCACGGAGAGGACCCGCTGCCGCCACCGCCGCAGCCG
CCGTGGCCGCTATGGCTCCTGCCACTGCTGCCCCGGCACACGCGGGGGCG
CGACTCCAGGCAGTGAACTGAAGTAGCCGCTACGGGTGTGGGGATTTAGA
GATCGTGCAACCCGGCGCGGCTGTTGGTGCATGGCATAGCATACGTCACA
GTACATACTTCAAAGTGCATCAGAGACAAGGAGGAAACCCCTGCCCAACA
CTTATGAATTTGTGCGCCGAATACCTCAGCAGGGGCTCGGCCAGCCCAGC
CAGGGTCTGCGGGGTAGGCACCAGGGTCGTGCATCCCCGTGGACCGCAAC
TCCAAGAGTAGCTTGCAACAGCTGCTCACCTCGTTCAACCTCACAAGCAC
TTCCAAGTGCTTCCCCGGAAGTAGTAGACTTGAAACACAAATGCTTTTAT
TAAACCACACTCGGCTACTTCCATGTACTTCCAAGCATTGCTTCCAAGTA
TTTGTAATCTAGCGCCCTCCACGCTCAGCGCACGGCTTCCCCCGAGGCTA
GTCATCCTGAGCCTGCCGGGCCACCCCCCGGCCCCAGCACACTTCCGTTC
CCCTCCGACTCCGCACCCAGACTCAGTGAGCCGGGGCCCTCCGCTCGCCA
AAGCGGGTTCCGCCCCACGGCCTCCTGCTCTGCAGCACTCGTGCCCTCAT
GCTCAGGCTCCCCAAGTCCCCAGGCCTCCCCGGGTGGCCCGGGCGGCGGC
CCCTCCAGCTGGCGCCGGGCCCATGCCCGCTCCCTTGCGGCCCTCTCCGC
CAGCACCAACGCCTCTGAAGCCTCCCTCTCCCCTCCTCCAGCTCCGCGAA
CGGCAGCCTCGTCACGGATGGTCTCGAGTACTGGCGCGCTGGCAGTCCGG
GGCCCCGGCCCGGCCGGCCCGGACCTTGCCGTCTCCACCGAGTCCCATCC
TGGGGGGCCCGAGTGAGGCTGCCCACGGGGGCGGCAGCCCGGGGTTTCGG
GGACATGAGTCTCTGTGGCAGCTGCAGCACCGGCAGCAGCGCCGCCCACG
CCGCCGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7886938..7888044+

>mRNA_S-ischiensis_contig1.1165.1 ID=mRNA_S-ischiensis_contig1.1165.1|Name=mRNA_S-ischiensis_contig1.1165.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1170bp|location=Sequence derived from alignment at S-ischiensis_contig1:7886938..7888044+ (Schizocladia ischiensis KU_0333)
ATGTACTTCCAAGCATTGCTTCCAAGTATTTGTAATCTAGCGCCCTCCAC
GCTCAGCGCACGGCTTCCCCCGAGGCTAGTCATCCTGAGCCTGCCGGGCC
ACCCCCCGGCCCCAGCACACTTCCGTTCCCCTCCGACTCCGCACCCAGAC
TCAGTGAGCCGGGGCCCTCCGCTCGCCAAAGCGGGTTCCGCCCCACGGCC
TCCTGCTCTGCAGCACTCGTGCCCTCATGCTCAGGCTCCCCAAGTCCCCA
GGCCTCCCCGGGTGGCCCGGGCGGCGGCCCCTCCAGCTGGCGCCGGGCCC
ATGCCCGCTCCCTTGCGGCCCTCTCCGCCAGCACCAACGCCTCTGAAGCC
TCCCTCTCCCCTCCTCCAGCTCCGCGAACGGCAGCCTCGTCACGGATGGT
CTCGAGTACTGGCGCGCTGGCAGTCCGGGGCCCCGGCCCGGCCGGCCCGG
ACCTTGCCGTCTCCACCGAGTCCCATCCTGGGGGGCCCGAGTGAGGCTGC
CCACGGGGGCGGCAGCCCGGGGTTTCGGGGACATGAGTCTCTGTGGCAGC
TGCAGCACCGGCAGCAGCGCCGCCCACGCCGCCGCATGTACTTCCAAGCA
TTGCTTCCAAGTATTTGTAATCTAGCGCCCTCCACGCTCAGCGCACGGCT
TCCCCCGAGGCTAGTCATCCTGAGCCTGCCGGGCCACCCCCCGGCCCCAG
CACACTTCCGTTCCCCTCCGACTCCGCACCCAGACTCAGTGAGCCGGGGC
CCTCCGCTCGCCAAAGCGGGTTCCGCCCCACGGCCTCCTGCTCTGCAGCA
CTCGTGCCCTCATGCTCAGGCTCCCCAAGTCCCCAGGCCTCCCCGGGTGG
CCCGGGCGGCGGCCCCTCCAGCTGGCGCCGGGCCCATGCCCGCTCCCTTG
CGGCCCTCTCCGCCAGCACCAACGCCTCTGAAGCCTCCCTCTCCCCTCCT
CCAGCTCCGCGAACGGCAGCCTCGTCACGGATGGTCTCGAGTACTGGCGC
GCTGGCAGTCCGGGGCCCCGGCCCGGCCGGCCCGGACCTTGCCGTCTCCA
CCGAGTCCCATCCTGGGGGGCCCGAGTGAGGCTGCCCACGGGGGCGGCAG
CCCGGGGTTTCGGGGACATGAGTCTCTGTGGCAGCTGCAGCACCGGCAGC
AGCGCCGCCCACGCCGCCGC
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