mRNA_S-ischiensis_contig1.1102.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1102.1
Unique NamemRNA_S-ischiensis_contig1.1102.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7524813..7525748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size937
Cds size936
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.5177848-CDS-S-ischiensis_contig1:7524812..75257481622815376.5177848-CDS-S-ischiensis_contig1:7524812..7525748Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7524813..7525748 +
1695739665.6955626-CDS-S-ischiensis_contig1:7524812..75257481695739665.6955626-CDS-S-ischiensis_contig1:7524812..7525748Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7524813..7525748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1102.1prot_S-ischiensis_contig1.1102.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7524813..7525748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1102.1

>prot_S-ischiensis_contig1.1102.1 ID=prot_S-ischiensis_contig1.1102.1|Name=mRNA_S-ischiensis_contig1.1102.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=312bp
RGPGPRWGRGRRPFLPHQSWQERYGLLGKLQAMSLRAFAHLLADLRPGVP
LPDVLTLGPAVGGEAEEAAAAPVATVRVGLVPLLYEQSLRAVDLPSFMSV
RGLEGQACGLEHRLAEAWALQVSHRQHCLRNCRGGAGGRDRAGRGQRRRR
RCRRRSDKSLGLPCRGEAPSLWPAAEALLTALSLALDGGEQAAAAAAAGS
KKGGATAVEKAAGGAAPRGDLIPDLLRLPRPRGDKEEEEAARRRRAAEAE
KASRRRLDAEELVIFVDQPLELCIKALELHGDDKERAANWLLSGEAQSFL
VEGGVGGLGVGD
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mRNA from alignment at S-ischiensis_contig1:7524813..7525748+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1102.1 ID=mRNA_S-ischiensis_contig1.1102.1|Name=mRNA_S-ischiensis_contig1.1102.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=936bp|location=Sequence derived from alignment at S-ischiensis_contig1:7524813..7525748+ (Schizocladia ischiensis KU_0333)
CGGGGACCGGGGCCGCGGTGGGGGCGAGGGCGACGGCCATTCTTGCCCCA
TCAAAGCTGGCAGGAGAGGTACGGGTTGCTTGGCAAGCTGCAGGCCATGT
CCCTGAGGGCCTTTGCCCACCTGCTGGCGGACCTGCGGCCCGGGGTTCCG
CTGCCGGATGTCCTGACGTTGGGGCCGGCAGTAGGGGGCGAGGCAGAGGA
AGCGGCGGCGGCACCGGTGGCGACGGTCAGGGTGGGGTTGGTGCCCCTGC
TTTACGAGCAGTCGCTGCGAGCGGTGGACCTGCCATCGTTCATGAGCGTG
CGTGGCCTGGAGGGGCAGGCATGCGGCCTGGAGCATCGCCTGGCAGAGGC
CTGGGCACTGCAGGTCAGCCACCGCCAGCACTGCCTCCGAAACTGCCGAG
GTGGCGCAGGAGGAAGAGACAGAGCGGGGCGCGGTCAGCGCCGCCGCCGC
CGCTGCCGCCGCCGCAGCGACAAGTCCTTGGGCCTTCCGTGCCGCGGGGA
GGCCCCGTCACTGTGGCCCGCGGCCGAGGCCCTGCTGACTGCCCTCTCCC
TTGCGCTTGACGGGGGCGAGCAGGCTGCAGCAGCAGCAGCAGCAGGCAGC
AAGAAGGGCGGCGCTACCGCCGTGGAGAAAGCAGCGGGAGGGGCAGCGCC
ACGGGGAGACCTCATCCCAGACCTGCTGCGGCTGCCGCGGCCGCGCGGGG
ACAAGGAGGAGGAGGAGGCGGCGCGGCGGCGGCGGGCGGCGGAGGCGGAG
AAGGCAAGCCGGCGACGCCTGGACGCCGAGGAGTTGGTGATTTTCGTGGA
CCAGCCCCTGGAGCTGTGCATCAAGGCGCTAGAGCTCCATGGCGATGACA
AGGAACGTGCGGCCAACTGGCTCCTGTCCGGGGAAGCCCAGTCCTTCCTG
GTTGAGGGCGGCGTGGGCGGGCTCGGCGTCGGCGAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7524813..7525748+

>mRNA_S-ischiensis_contig1.1102.1 ID=mRNA_S-ischiensis_contig1.1102.1|Name=mRNA_S-ischiensis_contig1.1102.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1872bp|location=Sequence derived from alignment at S-ischiensis_contig1:7524813..7525748+ (Schizocladia ischiensis KU_0333)
CGGGGACCGGGGCCGCGGTGGGGGCGAGGGCGACGGCCATTCTTGCCCCA
TCAAAGCTGGCAGGAGAGGTACGGGTTGCTTGGCAAGCTGCAGGCCATGT
CCCTGAGGGCCTTTGCCCACCTGCTGGCGGACCTGCGGCCCGGGGTTCCG
CTGCCGGATGTCCTGACGTTGGGGCCGGCAGTAGGGGGCGAGGCAGAGGA
AGCGGCGGCGGCACCGGTGGCGACGGTCAGGGTGGGGTTGGTGCCCCTGC
TTTACGAGCAGTCGCTGCGAGCGGTGGACCTGCCATCGTTCATGAGCGTG
CGTGGCCTGGAGGGGCAGGCATGCGGCCTGGAGCATCGCCTGGCAGAGGC
CTGGGCACTGCAGGTCAGCCACCGCCAGCACTGCCTCCGAAACTGCCGAG
GTGGCGCAGGAGGAAGAGACAGAGCGGGGCGCGGTCAGCGCCGCCGCCGC
CGCTGCCGCCGCCGCAGCGACAAGTCCTTGGGCCTTCCGTGCCGCGGGGA
GGCCCCGTCACTGTGGCCCGCGGCCGAGGCCCTGCTGACTGCCCTCTCCC
TTGCGCTTGACGGGGGCGAGCAGGCTGCAGCAGCAGCAGCAGCAGGCAGC
AAGAAGGGCGGCGCTACCGCCGTGGAGAAAGCAGCGGGAGGGGCAGCGCC
ACGGGGAGACCTCATCCCAGACCTGCTGCGGCTGCCGCGGCCGCGCGGGG
ACAAGGAGGAGGAGGAGGCGGCGCGGCGGCGGCGGGCGGCGGAGGCGGAG
AAGGCAAGCCGGCGACGCCTGGACGCCGAGGAGTTGGTGATTTTCGTGGA
CCAGCCCCTGGAGCTGTGCATCAAGGCGCTAGAGCTCCATGGCGATGACA
AGGAACGTGCGGCCAACTGGCTCCTGTCCGGGGAAGCCCAGTCCTTCCTG
GTTGAGGGCGGCGTGGGCGGGCTCGGCGTCGGCGACCGGGGACCGGGGCC
GCGGTGGGGGCGAGGGCGACGGCCATTCTTGCCCCATCAAAGCTGGCAGG
AGAGGTACGGGTTGCTTGGCAAGCTGCAGGCCATGTCCCTGAGGGCCTTT
GCCCACCTGCTGGCGGACCTGCGGCCCGGGGTTCCGCTGCCGGATGTCCT
GACGTTGGGGCCGGCAGTAGGGGGCGAGGCAGAGGAAGCGGCGGCGGCAC
CGGTGGCGACGGTCAGGGTGGGGTTGGTGCCCCTGCTTTACGAGCAGTCG
CTGCGAGCGGTGGACCTGCCATCGTTCATGAGCGTGCGTGGCCTGGAGGG
GCAGGCATGCGGCCTGGAGCATCGCCTGGCAGAGGCCTGGGCACTGCAGG
TCAGCCACCGCCAGCACTGCCTCCGAAACTGCCGAGGTGGCGCAGGAGGA
AGAGACAGAGCGGGGCGCGGTCAGCGCCGCCGCCGCCGCTGCCGCCGCCG
CAGCGACAAGTCCTTGGGCCTTCCGTGCCGCGGGGAGGCCCCGTCACTGT
GGCCCGCGGCCGAGGCCCTGCTGACTGCCCTCTCCCTTGCGCTTGACGGG
GGCGAGCAGGCTGCAGCAGCAGCAGCAGCAGGCAGCAAGAAGGGCGGCGC
TACCGCCGTGGAGAAAGCAGCGGGAGGGGCAGCGCCACGGGGAGACCTCA
TCCCAGACCTGCTGCGGCTGCCGCGGCCGCGCGGGGACAAGGAGGAGGAG
GAGGCGGCGCGGCGGCGGCGGGCGGCGGAGGCGGAGAAGGCAAGCCGGCG
ACGCCTGGACGCCGAGGAGTTGGTGATTTTCGTGGACCAGCCCCTGGAGC
TGTGCATCAAGGCGCTAGAGCTCCATGGCGATGACAAGGAACGTGCGGCC
AACTGGCTCCTGTCCGGGGAAGCCCAGTCCTTCCTGGTTGAGGGCGGCGT
GGGCGGGCTCGGCGTCGGCGAC
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