mRNA_S-ischiensis_contig1.1010.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1010.1
Unique NamemRNA_S-ischiensis_contig1.1010.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig1.1010.1 vs. uniprot
Match: D8LCE3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCE3_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 4.040e-6
Identity = 38/88 (43.18%), Postives = 48/88 (54.55%), Query Frame = 1 
Query:  232 PTEHVRGKGCNQYGKFALTGVHETSSGHLNLTRIYYEVHSPRD---SSKAAQXXXXXXXXXXXXXXRVPVLVEGAAGPSLAERRAKRS 486
            P   V G+G N+YG+F LTG HE ++G L+LTR YYE    R    S++  +         XXXXX          GPSLAERR KR+
Sbjct:  310 PVVRVSGRGQNKYGEFTLTGGHERATGRLDLTRFYYEKPKERSTVASTRGERSSRGVSHQKXXXXXXXXXXXXXPPGPSLAERRTKRT 397
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCE3_ECTSI4.040e-643.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:6989154..6989737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMORN motif
Ec32 orthologEc-26_004680.1
Exons1
Model size585
Cds size582
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815373.9320333-CDS-S-ischiensis_contig1:6989153..69897351622815373.9320333-CDS-S-ischiensis_contig1:6989153..6989735Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6989154..6989735 +
1695739665.2414231-CDS-S-ischiensis_contig1:6989153..69897351695739665.2414231-CDS-S-ischiensis_contig1:6989153..6989735Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6989154..6989735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1010.1prot_S-ischiensis_contig1.1010.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 6989154..6989735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1010.1

>prot_S-ischiensis_contig1.1010.1 ID=prot_S-ischiensis_contig1.1010.1|Name=mRNA_S-ischiensis_contig1.1010.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=194bp
EPAEGSKPDGDGSPPQPQDDGVGRQGDAAPPANNERSRENGSGRTATQDA
AATPTAAAAPVAAPAPQDKFAPPEFTGPTEHVRGKGCNQYGKFALTGVHE
TSSGHLNLTRIYYEVHSPRDSSKAAQKAAAGGSAANNKKRRVPVLVEGAA
GPSLAERRAKRSCSGAVYLQRMYELEGDSPRNGGAGHDHWHGQW
back to top

mRNA from alignment at S-ischiensis_contig1:6989154..6989737+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1010.1 ID=mRNA_S-ischiensis_contig1.1010.1|Name=mRNA_S-ischiensis_contig1.1010.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=584bp|location=Sequence derived from alignment at S-ischiensis_contig1:6989154..6989737+ (Schizocladia ischiensis KU_0333)
GAGCCGGCCGAGGGCTCCAAACCTGACGGCGATGGATCACCTCCGCAGCC
TCAGGACGATGGGGTGGGGCGGCAAGGGGACGCGGCGCCCCCGGCGAATA
ACGAACGCAGCCGCGAGAATGGCAGCGGCCGGACTGCTACCCAGGATGCG
GCCGCCACACCCACTGCCGCTGCCGCCCCCGTCGCCGCCCCCGCGCCGCA
AGACAAGTTTGCTCCGCCCGAGTTCACGGGCCCCACGGAGCACGTGCGTG
GCAAGGGCTGCAACCAGTACGGGAAGTTTGCCCTCACTGGCGTACACGAG
ACGTCCTCGGGCCACCTGAACCTCACCCGCATATACTACGAGGTGCACAG
CCCCCGGGACTCCTCAAAGGCTGCGCAGAAGGCCGCGGCCGGTGGCAGCG
CGGCCAACAACAAGAAGCGGCGCGTCCCGGTCCTCGTGGAGGGTGCCGCA
GGCCCGTCGCTCGCCGAGCGGCGGGCGAAGCGCTCGTGTTCAGGGGCCGT
GTACCTCCAGCGCATGTACGAGCTCGAGGGGGACAGCCCGCGGAACGGCG
GCGCCGGCCATGACCACTGGCACGGGCAGTGGGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig1:6989154..6989737+

>mRNA_S-ischiensis_contig1.1010.1 ID=mRNA_S-ischiensis_contig1.1010.1|Name=mRNA_S-ischiensis_contig1.1010.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1164bp|location=Sequence derived from alignment at S-ischiensis_contig1:6989154..6989737+ (Schizocladia ischiensis KU_0333)
GAGCCGGCCGAGGGCTCCAAACCTGACGGCGATGGATCACCTCCGCAGCC
TCAGGACGATGGGGTGGGGCGGCAAGGGGACGCGGCGCCCCCGGCGAATA
ACGAACGCAGCCGCGAGAATGGCAGCGGCCGGACTGCTACCCAGGATGCG
GCCGCCACACCCACTGCCGCTGCCGCCCCCGTCGCCGCCCCCGCGCCGCA
AGACAAGTTTGCTCCGCCCGAGTTCACGGGCCCCACGGAGCACGTGCGTG
GCAAGGGCTGCAACCAGTACGGGAAGTTTGCCCTCACTGGCGTACACGAG
ACGTCCTCGGGCCACCTGAACCTCACCCGCATATACTACGAGGTGCACAG
CCCCCGGGACTCCTCAAAGGCTGCGCAGAAGGCCGCGGCCGGTGGCAGCG
CGGCCAACAACAAGAAGCGGCGCGTCCCGGTCCTCGTGGAGGGTGCCGCA
GGCCCGTCGCTCGCCGAGCGGCGGGCGAAGCGCTCGTGTTCAGGGGCCGT
GTACCTCCAGCGCATGTACGAGCTCGAGGGGGACAGCCCGCGGAACGGCG
GCGCCGGCCATGACCACTGGCACGGGCAGTGGGAGCCGGCCGAGGGCTCC
AAACCTGACGGCGATGGATCACCTCCGCAGCCTCAGGACGATGGGGTGGG
GCGGCAAGGGGACGCGGCGCCCCCGGCGAATAACGAACGCAGCCGCGAGA
ATGGCAGCGGCCGGACTGCTACCCAGGATGCGGCCGCCACACCCACTGCC
GCTGCCGCCCCCGTCGCCGCCCCCGCGCCGCAAGACAAGTTTGCTCCGCC
CGAGTTCACGGGCCCCACGGAGCACGTGCGTGGCAAGGGCTGCAACCAGT
ACGGGAAGTTTGCCCTCACTGGCGTACACGAGACGTCCTCGGGCCACCTG
AACCTCACCCGCATATACTACGAGGTGCACAGCCCCCGGGACTCCTCAAA
GGCTGCGCAGAAGGCCGCGGCCGGTGGCAGCGCGGCCAACAACAAGAAGC
GGCGCGTCCCGGTCCTCGTGGAGGGTGCCGCAGGCCCGTCGCTCGCCGAG
CGGCGGGCGAAGCGCTCGTGTTCAGGGGCCGTGTACCTCCAGCGCATGTA
CGAGCTCGAGGGGGACAGCCCGCGGAACGGCGGCGCCGGCCATGACCACT
GGCACGGGCAGTGG
back to top