mRNA_S-ischiensis_contig15.3806.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3806.1
Unique NamemRNA_S-ischiensis_contig15.3806.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig15.3806.1 vs. uniprot
Match: D8LR42_ECTSI (Ribosomal protein L3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR42_ECTSI)

HSP 1 Score: 379 bits (973), Expect = 4.700e-124
Identity = 187/269 (69.52%), Postives = 218/269 (81.04%), Query Frame = 1 
Query:  178 GGVGPAAGTLPMENREWSPEARRCGILAMKVGMMSVFDSWGERHATTVLQVDACDVLQVKKDDTDGYTAVQTGVGERKRKNVVKPLMGHFDKVGVEPKREVQEFRVTPDALLPPGFRMRALHFVPGQLVDVCGTTKGKGFQGAMKRWGFAGQPASHGVSKTHRHIGSTGQCQNPGRVFKGKKMPGRMGGDRRTVQNLKILKIDPVRELLYVKGAVPGNKGGFVRVTDAVKGACYPSDPPFPSY----EGGGDET--EELWCPQGDDDPL 966
            GGVG   G   +E REW+P  RR G LAMKVG M++FDSWG RH  TVLQ+D C+V+QVK  +TDGYT++Q GVGERK KNV KP    F + GV PKR++ EFRV+ +ALLP GF++RA HFV GQ VDVCGT+KGKGFQG MKRWGF GQ ASHGVSKT RHIGSTGQCQ+PGRVFKGKKMPGRMG DR TVQNLKILK+DPVRELL+V+G VPG  GGFVRVTDA+KGA +PSDPPFPS+    EG GD++  +E+WCPQG++DPL
Sbjct:   98 GGVG---GPQSLEAREWNPSVRRSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTPRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKMDPVRELLFVRGHVPGQNGGFVRVTDAIKGAAFPSDPPFPSFVAVAEGDGDDSSLQEIWCPQGEEDPL 363
[Close]
BLAST of mRNA_S-ischiensis_contig15.3806.1 vs. uniprot
Match: A0A835Z1M4_9STRA (Translation protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1M4_9STRA)

HSP 1 Score: 314 bits (804), Expect = 1.520e-100
Identity = 160/237 (67.51%), Postives = 183/237 (77.22%), Query Frame = 1 
Query:  274 MMSVFDSWGERHATTVLQVDACDVLQVKKDDTDGYTAVQTGVGERKRKNVVKPLMGHFDKVGVEPKREVQEFRVTPDALLPPGFRMRALHFVPGQLVDVCGTTKGKGFQGAMKRWGFAGQPASHGVSKTHRHIGSTGQCQNPGRVFKGKKMPGRMGGDRRTVQNLKILKIDPVRELLYVKGAVPGNKGGFVRVTDAVKGACYPSDPPFPSY-----EGGGDETE-ELWCPQGDDDPL 966
            M  ++D+WGERHA TVL +DAC V QV +++T GYTAVQ G GE K KNV K L G F K GV PKR + EFRVTPDALLP GFR+RA HFVPGQL+DV GTTKGKGFQG MKRW F GQ ASHGVSKTHRHIGSTGQCQ+PGRVFKGKKMPGRMGG   TVQ L+ILK+D  R+LL+VKG VPG +G F+RV DA+K A +P+ PPFPSY     EG G+E   EL+ P  + DPL
Sbjct:    1 MTQIWDAWGERHAVTVLHLDACQVTQVCREETHGYTAVQVGAGEAKPKNVRKSLAGLFAKAGVPPKRRLGEFRVTPDALLPVGFRLRAQHFVPGQLIDVRGTTKGKGFQGGMKRWNFKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGGTAVTVQCLRILKLDTQRDLLFVKGHVPGPRGAFLRVQDALKRAEFPAPPPFPSYAPPPHEGEGEEVPLELFAPVKESDPL 237
[Close]
BLAST of mRNA_S-ischiensis_contig15.3806.1 vs. uniprot
Match: A0A8K1CEF8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEF8_PYTOL)

HSP 1 Score: 311 bits (797), Expect = 1.260e-98
Identity = 157/251 (62.55%), Postives = 190/251 (75.70%), Query Frame = 1 
Query:  220 REWSPEARRCGILAMKVGMMSVFDSWGERHATTVLQVDACDVLQVKKDDTDGYTAVQTGVGERKRKNVVKPLMGHFDKVGVEPKREVQEFRVTPDALLPPGFRMRALHFVPGQLVDVCGTTKGKGFQGAMKRWGFAGQPASHGVSKTHRHIGSTGQCQNPGRVFKGKKMPGRMGGDRRTVQNLKILKIDPVRELLYVKGAVPGNKGGFVRVTDAVKGACYPSDP-PFPSYEG--GGDETEELWCPQGDDDP 963
            +EW+PE +R G+LA+K+GMM V+D +G RHA TVLQV+ C V QVK  +  G++++Q GVG RK +NV KP+MGH  K GV PKR++QEFRV+ DALLP G  + A HF PGQ VDVCGT+KGKGFQG MKR  FAGQPASHG SKT RH+GSTGQCQ+PG+VFKGKKMPGR+GG+R T  NL ++K+D  R LLYVKG+VPGN GG VRVTDA K    PS P P+P+Y    G D   E+  PQGD DP
Sbjct:   48 KEWTPEKKRTGLLAVKIGMMPVWDHYGYRHACTVLQVEECQVTQVKTTERHGFSSLQLGVGIRKARNVTKPVMGHLAKAGVAPKRQLQEFRVSDDALLPLGTTLSAQHFTPGQYVDVCGTSKGKGFQGVMKRHNFAGQPASHGNSKTERHMGSTGQCQDPGKVFKGKKMPGRLGGERVTRDNLWVVKVDTQRNLLYVKGSVPGNNGGIVRVTDARKKT--PSAPLPYPTYIAAEGEDMPAEIMAPQGDADP 296
[Close]
BLAST of mRNA_S-ischiensis_contig15.3806.1 vs. uniprot
Match: A0A2D4BUJ6_PYTIN (50S ribosomal protein L3 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BUJ6_PYTIN)

HSP 1 Score: 305 bits (780), Expect = 4.000e-96
Identity = 154/251 (61.35%), Postives = 190/251 (75.70%), Query Frame = 1 
Query:  220 REWSPEARRCGILAMKVGMMSVFDSWGERHATTVLQVDACDVLQVKKDDTDGYTAVQTGVGERKRKNVVKPLMGHFDKVGVEPKREVQEFRVTPDALLPPGFRMRALHFVPGQLVDVCGTTKGKGFQGAMKRWGFAGQPASHGVSKTHRHIGSTGQCQNPGRVFKGKKMPGRMGGDRRTVQNLKILKIDPVRELLYVKGAVPGNKGGFVRVTDAVKGACYPS-DPPFPSY--EGGGDETEELWCPQGDDDP 963
            +EW+PE +R G+LA+KVGMM V+D +G RHA TVLQV+ C V QVK  D  G++A+Q GVG RK +NV KP++GH  K GV  KR++QEFRV+ D L+P G  + ALHFVPGQ VDVCGT+KGKGFQG MKR  FAGQPASHG SKT RH+GSTGQCQ+PG+VFKGKKMPGR+GG+R T  NL ++K+D  R LLYVKG+VPG KGG VRVTDA K    PS + P+P++    G +  +E+  P GD DP
Sbjct:   44 KEWAPEKKRTGLLAVKVGMMPVWDHFGYRHACTVLQVEECQVTQVKAADRHGFSALQLGVGLRKERNVPKPVLGHLAKAGVPAKRQLQEFRVSDDGLIPLGTTLSALHFVPGQYVDVCGTSKGKGFQGVMKRHNFAGQPASHGNSKTQRHMGSTGQCQDPGKVFKGKKMPGRLGGERVTRDNLWVVKVDTKRNLLYVKGSVPGGKGGIVRVTDARKKT--PSVELPYPTFIPADGEEIPDEIMAPHGDSDP 292
[Close]
BLAST of mRNA_S-ischiensis_contig15.3806.1 vs. uniprot
Match: A0A067BQA7_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BQA7_SAPPC)

HSP 1 Score: 302 bits (773), Expect = 2.440e-95
Identity = 154/261 (59.00%), Postives = 187/261 (71.65%), Query Frame = 1 
Query:  190 PAAGTLPMENREWSPEARRCGILAMKVGMMSVFDSWGERHATTVLQVDACDVLQVKKDDTDGYTAVQTGVGERKRKNVVKPLMGHFDKVGVEPKREVQEFRVTPDALLPPGFRMRALHFVPGQLVDVCGTTKGKGFQGAMKRWGFAGQPASHGVSKTHRHIGSTGQCQNPGRVFKGKKMPGRMGGDRRTVQNLKILKIDPVRELLYVKGAVPGNKGGFVRVTDAVKGACYPSD--PPFPSY-EGGGDETEELWCPQGDDDP 963
            P A +  +E + W+PE++R G+LA K+GM+SVFD WG  HA TVLQV+ C V QVK  +T G+T++Q G G RK KNV KP++GH  K GV  KRE+ EFRVT DAL+P G  + ALHF PGQ VDVCGT+KGKGFQG MKR  FAGQPASHG SKT RH+GS+GQCQ+PG+V+KGKKMPGRMGG R T  NL + K+DP R LLYVKG VPG  GG VRVTDA K   +  D  PPFP++   G      +  P+ + DP
Sbjct:   16 PRAMSTALEAKPWTPESKRTGLLATKMGMISVFDDWGLSHACTVLQVEECQVTQVKDKETHGFTSLQIGAGLRKAKNVTKPVLGHLAKAGVPAKRELAEFRVTDDALIPAGTTLNALHFAPGQYVDVCGTSKGKGFQGVMKRHNFAGQPASHGNSKTERHMGSSGQCQDPGKVWKGKKMPGRMGGKRVTRDNLWVFKVDPERNLLYVKGTVPGAPGGIVRVTDARK-KKFTDDALPPFPTFIHDGAALPGPIMAPKSEKDP 275
[Close]
BLAST of mRNA_S-ischiensis_contig15.3806.1 vs. uniprot
Match: A0A1V9ZYU3_9STRA (50S ribosomal protein L3-2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYU3_9STRA)

HSP 1 Score: 300 bits (768), Expect = 1.410e-94
Identity = 147/257 (57.20%), Postives = 187/257 (72.76%), Query Frame = 1 
Query:  202 TLPMENREWSPEARRCGILAMKVGMMSVFDSWGERHATTVLQVDACDVLQVKKDDTDGYTAVQTGVGERKRKNVVKPLMGHFDKVGVEPKREVQEFRVTPDALLPPGFRMRALHFVPGQLVDVCGTTKGKGFQGAMKRWGFAGQPASHGVSKTHRHIGSTGQCQNPGRVFKGKKMPGRMGGDRRTVQNLKILKIDPVRELLYVKGAVPGNKGGFVRVTDAVKGACYPS-DPPFPSY--EGGGDETEELWCPQGDDDP 963
            +L +E ++W+PE++R G+LA+K+GMM V+D WG  H  TVLQV+ C V Q+K  +T G++A+Q G G RK KN+ KP++GH  K GV  KRE+QEFRV+ DAL+P G ++ ALHF PGQ VDVCGT+KGKGFQG MKR  FAGQPASHG SKT RH+GS+GQCQ+PG+V+KGKKMPGRMGG R T  NL + K+DP R LL+VKG VPG  GG VRVTDA K     +  PPFP++    G      +  P+ + DP
Sbjct:   20 SLALEPKQWTPESKRTGLLAVKMGMMHVYDDWGLAHPCTVLQVEECQVTQIKDKETHGFSAIQLGAGLRKEKNLTKPVLGHLAKAGVPAKRELQEFRVSDDALIPAGTKLNALHFAPGQYVDVCGTSKGKGFQGVMKRHNFAGQPASHGNSKTERHMGSSGQCQDPGKVWKGKKMPGRMGGKRVTRDNLWVFKVDPERNLLFVKGTVPGAPGGIVRVTDARKKKFKDAAQPPFPTFILAEGESLPGPIMAPKSEKDP 276
[Close]
BLAST of mRNA_S-ischiensis_contig15.3806.1 vs. uniprot
Match: A0A662XEF5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XEF5_9STRA)

HSP 1 Score: 300 bits (769), Expect = 1.710e-94
Identity = 154/249 (61.85%), Postives = 186/249 (74.70%), Query Frame = 1 
Query:  226 WSPEARRCGILAMKVGMMSVFDSWGERHATTVLQVDACDVLQVKKDDTDGYTAVQTGVGERKRKNVVKPLMGHFDKVGVEPKREVQEFRVTPDALLPPGFRMRALHFVPGQLVDVCGTTKGKGFQGAMKRWGFAGQPASHGVSKTHRHIGSTGQCQNPGRVFKGKKMPGRMGGDRRTVQNLKILKIDPVRELLYVKGAVPGNKGGFVRVTDAVKGACYPSDP-PFPSYEG--GGDETEELWCPQGDDDP 963
            W+PE +R G+LA+K+GMM V+D +G RH  TVLQV+ C V QVK  D  G+TA+Q GVG RK KN+ KP++GH +K GV  KR++QEFRV+ DALLP G  + ALHF  GQ VDVCGT+KGKGFQG MK   FAGQPASHG SKTHRH+GSTGQCQ+PG+V+KGKKMPGRMGG+R T  NL I KID  R LLYVKG+VPGN GG VRVTDA K    P +P P+P++    G    +E+  P GD+DP
Sbjct:   45 WTPEKKRTGLLAVKIGMMPVWDHFGYRHNCTVLQVEECQVTQVKTADRHGFTALQLGVGVRKSKNMTKPVLGHLEKAGVPAKRQLQEFRVSEDALLPLGTTLSALHFNAGQYVDVCGTSKGKGFQGVMKLHNFAGQPASHGNSKTHRHMGSTGQCQDPGKVWKGKKMPGRMGGNRVTRDNLWIAKIDVERNLLYVKGSVPGNNGGIVRVTDARKKV--PVEPLPYPTFMAVEGAQLPQEISAPHGDEDP 291
[Close]
BLAST of mRNA_S-ischiensis_contig15.3806.1 vs. uniprot
Match: A0A3M6VVY4_9STRA (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VVY4_9STRA)

HSP 1 Score: 299 bits (766), Expect = 4.190e-94
Identity = 153/248 (61.69%), Postives = 182/248 (73.39%), Query Frame = 1 
Query:  226 WSPEARRCGILAMKVGMMSVFDSWGERHATTVLQVDACDVLQVKKDDTDGYTAVQTGVGERKRKNVVKPLMGHFDKVGVEPKREVQEFRVTPDALLPPGFRMRALHFVPGQLVDVCGTTKGKGFQGAMKRWGFAGQPASHGVSKTHRHIGSTGQCQNPGRVFKGKKMPGRMGGDRRTVQNLKILKIDPVRELLYVKGAVPGNKGGFVRVTDAVKGACYPSDPPFPSYEGGGDET--EELWCPQGDDDP 963
            WS E +R G+LA+K+GMM V+D +G RH  TVLQV+ C V Q+K  D  G+ A+Q GVG RK KNV KP++GH  K GV  KR++QEFRV+ DALLP G ++ ALHF PGQ VDVCGT+KGKGFQG MKR  FAGQPASHG SKTHRH+GSTGQCQ+PG+VFKGKKMPGRMGG+R T  NL I KID  R L+YVKG+VPGN GG VRVTDA K     +  P+P++     E    E+  P GD DP
Sbjct:   41 WSSEKKRTGLLAVKIGMMPVWDHFGYRHNCTVLQVEECQVTQIKTADRHGFNALQLGVGLRKPKNVTKPVLGHLAKAGVPAKRQLQEFRVSEDALLPLGMKLSALHFTPGQYVDVCGTSKGKGFQGVMKRHNFAGQPASHGNSKTHRHMGSTGQCQDPGKVFKGKKMPGRMGGNRVTRDNLWIAKIDVERNLIYVKGSVPGNNGGIVRVTDARKKKLE-APLPYPTFVPAEGEALPSEIVAPHGDVDP 287
[Close]
BLAST of mRNA_S-ischiensis_contig15.3806.1 vs. uniprot
Match: A0A6G0WWS3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWS3_9STRA)

HSP 1 Score: 299 bits (765), Expect = 6.320e-94
Identity = 162/313 (51.76%), Postives = 202/313 (64.54%), Query Frame = 1 
Query:   34 MDTLARAVPRICRRARPTGGALAPPPVYQQCLSSVAAAAVETPVAPSGGGVGPAAGTLPMENREWSPEARRCGILAMKVGMMSVFDSWGERHATTVLQVDACDVLQVKKDDTDGYTAVQTGVGERKRKNVVKPLMGHFDKVGVEPKREVQEFRVTPDALLPPGFRMRALHFVPGQLVDVCGTTKGKGFQGAMKRWGFAGQPASHGVSKTHRHIGSTGQCQNPGRVFKGKKMPGRMGGDRRTVQNLKILKIDPVRELLYVKGAVPGNKGGFVRVTDAVKGACYPS-DPPFPSY--EGGGDETEELWCPQGDDDP 963
            M   +RA+PR+        GAL    V +Q +SS A A+                 ++ +EN+ W+PE++R G+LA+K+G M ++D WG  H  TVLQV+ C V QVK  D  G++++Q GVG RK +NV KP++ H  K GV  KR +QEFRV+ DALLPPG  + ALHF PGQ VDVC T+KGKGFQG MKR  FAGQPASHG S  HR +GS GQCQ+PG+V+KGKKMPGRMGG R T  NL +LK+DP R LLYVKG+VPG  GG VRVTDA K        PPFP++    G    E +  P GD DP
Sbjct:    1 MMLFSRAMPRV-------QGALMR--VQKQAMSSAAEASANA--------------SISLENKPWTPESKRTGLLAVKMGCMHIYDDWGLAHPVTVLQVEECQVTQVKTKDVHGFSSLQLGVGLRKERNVSKPVLAHLAKAGVPAKRSLQEFRVSEDALLPPGTTLNALHFAPGQYVDVCATSKGKGFQGVMKRHNFAGQPASHGNSLAHRAMGSAGQCQDPGKVWKGKKMPGRMGGKRVTRDNLWVLKVDPQRNLLYVKGSVPGAAGGIVRVTDARKKKFSEEITPPFPTFVLPAGESLPEPIMAPNGDKDP 290
[Close]
BLAST of mRNA_S-ischiensis_contig15.3806.1 vs. uniprot
Match: F0WWS6_9STRA (50S ribosomal protein L32 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WWS6_9STRA)

HSP 1 Score: 296 bits (758), Expect = 4.270e-93
Identity = 154/243 (63.37%), Postives = 179/243 (73.66%), Query Frame = 1 
Query:  235 EARRCGILAMKVGMMSVFDSWGERHATTVLQVDACDVLQVKKDDTDGYTAVQTGVGERKRKNVVKPLMGHFDKVGVEPKREVQEFRVTPDALLPPGFRMRALHFVPGQLVDVCGTTKGKGFQGAMKRWGFAGQPASHGVSKTHRHIGSTGQCQNPGRVFKGKKMPGRMGGDRRTVQNLKILKIDPVRELLYVKGAVPGNKGGFVRVTDAVKGACYPSDPPFPSYEGGGDETEELWCPQGDDDP 963
            E +R G+LA+K+GM+SV+D +G  H  TVLQV+ C V QVK  D  G+ A+Q GVG RK +NVVKPLMGH +K GV PKR++QEFRV+ DALL  G  + A+HFVPGQ VDVCGT+KGKGFQG MK   FAGQPASHG SKTHRH+GSTGQCQ+PGRVFKGKKMPGRMG  R T  NL I+KID VR LLYVKG+VPG KG  VRVTDA K     S P FP++    +   EL  P G  DP
Sbjct:   35 ERKRTGLLAVKIGMISVWDYYGVAHGCTVLQVEKCQVTQVKTSDIHGFNALQLGVGLRKPRNVVKPLMGHLNKAGVPPKRQLQEFRVSEDALLAAGTTLTAMHFVPGQYVDVCGTSKGKGFQGVMKLHNFAGQPASHGNSKTHRHMGSTGQCQDPGRVFKGKKMPGRMGNKRVTRDNLWIVKIDTVRNLLYVKGSVPGTKGSIVRVTDARKKTPTASLP-FPTFVTQEELPAELVAPHGTTDP 276
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR42_ECTSI4.700e-12469.52Ribosomal protein L3 n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835Z1M4_9STRA1.520e-10067.51Translation protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A8K1CEF8_PYTOL1.260e-9862.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BUJ6_PYTIN4.000e-9661.3550S ribosomal protein L3 n=1 Tax=Pythium insidiosu... [more]
A0A067BQA7_SAPPC2.440e-9559.00Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A1V9ZYU3_9STRA1.410e-9457.2050S ribosomal protein L3-2 n=1 Tax=Thraustotheca c... [more]
A0A662XEF5_9STRA1.710e-9461.85Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A3M6VVY4_9STRA4.190e-9461.69Uncharacterized protein n=2 Tax=Peronosporaceae Ta... [more]
A0A6G0WWS3_9STRA6.320e-9451.76Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
F0WWS6_9STRA4.270e-9363.3750S ribosomal protein L32 putative n=1 Tax=Albugo ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:2285191..2293254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score386.3
Seed ortholog evalue1.3e-104
Seed eggNOG ortholog2880.D8LR42
KEGG koko:K02906
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0087@1,KOG3141@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog description50S ribosomal protein L3
Ec32 orthologEc-06_004440.1
Exons9
Model size1773
Cds size954
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815768.7708106-UTR-S-ischiensis_contig15:2285190..22858121622815768.7708106-UTR-S-ischiensis_contig15:2285190..2285812Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 2285191..2285812 -
1695739905.0699039-UTR-S-ischiensis_contig15:2285190..22858121695739905.0699039-UTR-S-ischiensis_contig15:2285190..2285812Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 2285191..2285812 -
1622815768.7823973-UTR-S-ischiensis_contig15:2286227..22863911622815768.7823973-UTR-S-ischiensis_contig15:2286227..2286391Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 2286228..2286391 -
1695739905.0804195-UTR-S-ischiensis_contig15:2286227..22863911695739905.0804195-UTR-S-ischiensis_contig15:2286227..2286391Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 2286228..2286391 -
1622815768.8899033-UTR-S-ischiensis_contig15:2293221..22932541622815768.8899033-UTR-S-ischiensis_contig15:2293221..2293254Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 2293222..2293254 -
1695739905.1780562-UTR-S-ischiensis_contig15:2293221..22932541695739905.1780562-UTR-S-ischiensis_contig15:2293221..2293254Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 2293222..2293254 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815768.795021-CDS-S-ischiensis_contig15:2286391..22865171622815768.795021-CDS-S-ischiensis_contig15:2286391..2286517Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2286392..2286517 -
1695739905.0888448-CDS-S-ischiensis_contig15:2286391..22865171695739905.0888448-CDS-S-ischiensis_contig15:2286391..2286517Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2286392..2286517 -
1622815768.8073401-CDS-S-ischiensis_contig15:2287363..22874441622815768.8073401-CDS-S-ischiensis_contig15:2287363..2287444Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2287364..2287444 -
1695739905.0969284-CDS-S-ischiensis_contig15:2287363..22874441695739905.0969284-CDS-S-ischiensis_contig15:2287363..2287444Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2287364..2287444 -
1622815768.821805-CDS-S-ischiensis_contig15:2288550..22887301622815768.821805-CDS-S-ischiensis_contig15:2288550..2288730Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2288551..2288730 -
1695739905.1051726-CDS-S-ischiensis_contig15:2288550..22887301695739905.1051726-CDS-S-ischiensis_contig15:2288550..2288730Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2288551..2288730 -
1622815768.8318992-CDS-S-ischiensis_contig15:2289423..22895461622815768.8318992-CDS-S-ischiensis_contig15:2289423..2289546Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2289424..2289546 -
1695739905.1133811-CDS-S-ischiensis_contig15:2289423..22895461695739905.1133811-CDS-S-ischiensis_contig15:2289423..2289546Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2289424..2289546 -
1622815768.848251-CDS-S-ischiensis_contig15:2289825..22899511622815768.848251-CDS-S-ischiensis_contig15:2289825..2289951Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2289826..2289951 -
1695739905.1237988-CDS-S-ischiensis_contig15:2289825..22899511695739905.1237988-CDS-S-ischiensis_contig15:2289825..2289951Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2289826..2289951 -
1622815768.8603673-CDS-S-ischiensis_contig15:2290694..22907781622815768.8603673-CDS-S-ischiensis_contig15:2290694..2290778Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2290695..2290778 -
1695739905.1358845-CDS-S-ischiensis_contig15:2290694..22907781695739905.1358845-CDS-S-ischiensis_contig15:2290694..2290778Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2290695..2290778 -
1622815768.8700001-CDS-S-ischiensis_contig15:2291219..22914361622815768.8700001-CDS-S-ischiensis_contig15:2291219..2291436Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2291220..2291436 -
1695739905.1511104-CDS-S-ischiensis_contig15:2291219..22914361695739905.1511104-CDS-S-ischiensis_contig15:2291219..2291436Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2291220..2291436 -
1622815768.8804467-CDS-S-ischiensis_contig15:2293204..22932211622815768.8804467-CDS-S-ischiensis_contig15:2293204..2293221Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2293205..2293221 -
1695739905.1615193-CDS-S-ischiensis_contig15:2293204..22932211695739905.1615193-CDS-S-ischiensis_contig15:2293204..2293221Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2293205..2293221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3806.1prot_S-ischiensis_contig15.3806.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 2286392..2293221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3806.1

>prot_S-ischiensis_contig15.3806.1 ID=prot_S-ischiensis_contig15.3806.1|Name=mRNA_S-ischiensis_contig15.3806.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=318bp
MDTLARAVPRICRRARPTGGALAPPPVYQQCLSSVAAAAVETPVAPSGGG
VGPAAGTLPMENREWSPEARRCGILAMKVGMMSVFDSWGERHATTVLQVD
ACDVLQVKKDDTDGYTAVQTGVGERKRKNVVKPLMGHFDKVGVEPKREVQ
EFRVTPDALLPPGFRMRALHFVPGQLVDVCGTTKGKGFQGAMKRWGFAGQ
PASHGVSKTHRHIGSTGQCQNPGRVFKGKKMPGRMGGDRRTVQNLKILKI
DPVRELLYVKGAVPGNKGGFVRVTDAVKGACYPSDPPFPSYEGGGDETEE
LWCPQGDDDPLRDPDLE*
back to top

mRNA from alignment at S-ischiensis_contig15:2285191..2293254-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3806.1 ID=mRNA_S-ischiensis_contig15.3806.1|Name=mRNA_S-ischiensis_contig15.3806.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=8064bp|location=Sequence derived from alignment at S-ischiensis_contig15:2285191..2293254- (Schizocladia ischiensis KU_0333)
GAAGTACAGCTGGGTGGACCGGCCTGCCGCAGGATGGACACGCTAGCGAG
GTAAGCAGCGTACAGCTGTGACTACTAGTTTAGGGGGGGGACTGGGCTTG
TAGGTACAGAAATCGCGGTTGCAACTGGACGAGGGATGTCCCAGGCCATG
CCTTGCCGGGGATCATGTTTTTCGGCATGTACACAGACGCTGTGAGAGTG
CAAACTCGGTCAAGACGTACGTATTGCGTGGCCCAGTCCTTGCCAGTGAC
GATGAGCAATATTCACGCACGAGGGCTTGCGCCCCATGCTGATATGACGC
TGCGTTCTTTCCGAGGCAAAGCCCGGTGGGTGGCGCGACTGGGGGCTTTG
CACTCGATCAGGACGTAGGCATTGCGATGGCCCAGCGCTTGCCAATGACG
ATGAGCAATATTCATGCACGAGGGCTTGCGCCCCATGCTGATATGACGCT
GCGTTCTTTCCGAGGCAAAGGGGTAGGCGCGACTGGGGGCATGTCCGTGA
GTGTGTCCCCTCCTGAGGCAATAGCTTGGTGTGGCCCTAAGTTATATCCT
ACAAGGCTTAGTCGCGACACACATAAAGTATCGTGCTTGCCCACAAAATG
CAGAAAAAATATTCGTGCGCACGGACCTGCGTCCTACACTACTAAATACG
GCACTGAGTTCTGTCAAGCCTTGTGTTGCCCGGCTGAGGCGCGGCAAGGA
CCGCGCGTATGGGTGTTGTCTCCTCAGACACGAACGTTGCGCAATGCTTC
GACCTAAAGTCCGTAGCCTCGGCGTAGTTATTGCGCCACTGTTGCCCGTA
GCCCATGGCCATAGGCTATATTGTCGTTGAGGGCCTGTGCCCCACACTGA
TACAAGTGCCGCGTCCTTTCCGAGGCAAGCAAGCCACACGCACGCTCCAT
CCTTTTTTGCGTTTTTCCGGCGCTGGAGAAGGGACCAAAGACGCTACTAC
AGTACATCGAACAGATCATATGTTTACGCCCAAATCCTTGGGAACTTGTC
TCTCGGCTCTCGATCCCATGAAACACGGGACATGAATAGAGCTCTCCTCA
AAGTGCTTCGAAACGAAGCACGTATAGTAGAGATCTATGCGACCTCACAT
CGTGCTCGCCGGAGTCCCGAGACCATTGACCGCCACCTGTGCCTGTTCCG
AGACGGGAATGGTTTATGCCTTCGTTTCTCGGGGTCCCCATGGCCCCATG
CCCGAACAGCCAAAACAAAACCCGTGGTTGCTTCCGCGCCGCACCATGTC
CTCGGTACCCGACAAATGGCCGTACATCCAACCACCATTCGATTCAACTG
TTTCGGGCGGAGATGGGCAGAAACCGCCCAGTGCAGCGACATTTAACATG
TTCTCGCAGGCCTCACCGGCGCCCTGCCAAGTGAAGTACAACAAATACTT
CATACTTCGAAGTATACGAGCAAGGGCAAGGCATTGAGATTTTGTCAGCA
ACACACACGAGCCTTCCGGTAAAGGTAATTGTGCGTTTCAGCAGTCGCCC
TGCCACCCAGCTGTTGACCCCCCCTTCCCCCCCCCCCCACCCCCCCTGCC
CCCTCACCCACAAAAACCTTTGGCCCGCACTGCCCCGGTCCCCGGTCCAC
GGCCACCTGGGCTCAGTGATGGAATATCTAAGCAAATCAACCTATTTATC
ACAGTAATGACCTAGAGATCTATCGACAGTCGATATTCCATAGTCGGACC
CACACTTAAATCCAAGTAGTTAGAGTAGCGCCACTCACAAAATCAGTCGA
GCCCGTTAACTATGTACTTATCGATATTCCATCACTGCCTGGGCTTGGCC
CACGTTGCCGACACACAGGGCGGTGCCGCGGATTTGCCGCCGTGCGCGGC
CGACCGGCGGCGCGTTGGCGCCACCGCCGGTATATCAGCAGTGCTTGTCG
TCAGTGGCGGCGGCGGCTGTGGAGACCCCCGTCGCTCCAAGCGGGGGGGG
CGTGGGGCCGGCGGCGGGGACGTTGCCGATGGAGAACCGGGAGTGGAGCC
CAGAAGCACGGCGGTGTGGGATTCTGGCGATGAAGGTGAGGTATAAATGT
GTTTGCCGTGATCGTCAGATATGTTTTTTTTCTTCTTTTTTTCTTTTATT
TTTTTTGGGGGGGTTCCATGGCTTTTGCGAGTGTGTCTTGTTTTGCTTTA
GCCCTTCCCTGGCGAGCTAGGGAAGGCTTTTGCCACTGTGGAGGTCTTTA
GTGACGTGGCCTGCTGCTCGCCTGTGTTGCCTGTCCTGTGAATACTGTGT
GTAGAGCCGGTGGTTCAAAGTGTTTGACAGGATAGTCAACAACAGCACAG
GCGACGTGATATGATGTGGCCCGCGCACACAAAAACACTACCGTACAGTT
TGACATCGCATCACATCGCATCACATCGCTTCGCTTCCGTCACAGCAGTC
ACGTCATCGCCCCGTTGTGCCTGCCGCGATTGACACCTGACTGACGGCAC
TGCCCCCCCCCCGTTGTGCGGCACAGGTGGGGATGATGTCCGTTTTTGAC
TCGTGGGGAGAGCGCCACGCGACCACTGTGCTGCAGGTGGACGCCTGCGA
TGTTCTGCAGGTGAATGCCCCCCACCCCATGGGCTGTGGGGCCCGCCCGA
GCCCAAGTTTTCGACTGCTGTTTTCTCTCAGCCCAAGTATTTGAGTGATG
TTTTTTCTTGGGCGCCGAGGGTGCAAACAAACCTGTGTGGGAACAAACCA
CGGATTCGGCTGGGGTGCCTTGGTCACGGGGGGCTGGCCGACCTGTGCGG
TCCATGAATTTGTCCGGTCTGTCGGGTTGACCCGTCTGTCACCCCCCCGG
GCCGCCTGCCAAGGTGGAGGGGCATGAAACGGACGGGTACACGGCCATGC
AGGCGGGGGTTGGCATGTTGCTCTCCCTTCTTTCCTCCTCTCTCTGAGTG
TGCCTCGTCTGTCTGTCTGTCTGCCTCTCTGTTGCTCTCCCTTCCTCCTC
TCTCTGAGCGTGCCTCGTCTGTCTGTCTGTCTGTTGGCCTGCCTCTCTCT
CTCTCTCTCTCTTGCACGCCCACATCTCTTCCCCCCAACCTCCCAAGGTG
AATGAGGATGAGATGGACGGGTGCTTCGCCATCCAGATACGGTTCCGTCC
CTCTCTCCCGCTCCCTCTCCCCTTGCCCTGTCTCTCCCTCCCTCCCTTTC
CCCCCGCCTCTCTGTCGCTGTCTCTGCCTCTAGTTTTCCTCTCTCTAACG
CATGCCCCCGTGCTCCTCCCCCCCCCCCCCCCCCAAGGTAACCCTCCAGT
TTTCCTCTCTCTAACGCATGCCCCCATGCTCCTCCCCTCCCCTTCCCCCC
AAGGTAAAAAAGGACGACACGGACGGCTACACGGCTGTCCAGACGGGGGT
CGGCGAGCGCAAGCGCAAGAACGTCGTCAAGCCGCTCATGGGCCACTTCG
ACAAGGTCGGGGTGGAGCCCAAGCGGGAGGTGAGAACAGGACAGCGAAAC
AACATGGGCACACGCACGCGAGCATGCACACACGCACACACGCACACGCA
ACACCAAAGAGGCGGGCAGCACCCCCCTGCCCAATGCCCGCTGCTCACCG
CGCCAATACCAGGCAGGCGTGGGACCAGCCACCCCAGTTTATGGGGGGTC
GGGGGCTGGCTGATCGACGGACCGCTCGACCGCCCGCCCGCCCGCGCTCC
GCGCGGATGGATGTGGGGCCACTCTTGTTGCGTAAATCTATGTAAATTTA
ATTGACAGGTTCAGGAGTTTCGCGTGACGCCGGACGCCTTGCTGCCACCG
GGGTTCCGGATGAGGGCGCTCCACTTTGTGCCGGGGCAGCTCGTGGACGT
GTGTGGCACCACCAAGGGCAAGGGATTCCAGGTGATGGAAGGGGGGAGGG
GGAGGGGGAGGAGGGGGAGGAACTGGTGTGTTGGGGTGTGCCGCTTCTGT
ATGTATATATATACATATATGTACTCACGTTGTGCTTAGTCCCGACTTAG
TCTGTAGGTACACGTAGTATTAACAGGAACAGTTCCGGAAACTGGTTTGC
CAAGTGTTGTCGCCGTGGCTGAGGGGTCCGTTTCGCTGCATGGCGCGGAC
CTGTTTTCCAGCGGCATGAGCGCTGCGATGTGGTGGGCCGGAAGGCCTCT
CTGGCCTTGTCACCCGTCATGTCAAACTACAGTACAAGAGTGCACTATAT
GTACTCAAGTGGTGCTTGCCGTAGTCCCGAGACTATTGACCCCGCGCCTC
GTTCGAGGCGGAGCAGTAGAGTACAAACCTCAAGCAAGTCGCGTCGATTT
GGTGATTCATATGAACTTTTGGTCGAAGATATACAAGCGAGTGGGAAAGA
AGAGGTGTTTGTACTTGCACTACTTCAGGCCCCCCCACTCCCGGAAGCCC
GTCTTTTCACCCGCCTTCATATAAATTGTAACCAGCTACAATCACATGTG
TGTGAGATTGAGTATCTCGATTTGGTGCCCCTGTGATTGGTTGAAGTATA
TCACATGGCGTTGCAAGCACCTCATGAGTGCCCCCCCCCACCACCACCAC
CTTTGGCACTCCGGGCTCATGCAGGGTGCGATGAAGCGATGGGGTTTCGC
TGGGCAGCCGGCTTCCCACGGGGTGTCCAAAACGCACCGGCACATTGGAT
CGACGGGACAGTGCCAGAACCCCGGGAGGGTGTTCAAGGGGAAAAAGATG
CCGGGGCGAATGGGGGGCGACCGGCGCACCGTCCAGAACCTGAAGATCCT
CAAGGTGTGTCTTGTGGAGTGGAGGGAGTTGCGTAGCTGAATTGTTTAGA
GGACGTCTGCACTGACTCGCTGTTTTTTTCTTTTCCTGTCAACGAAGGTG
CTGCAAAGCACAGCAGTGTACTGTAGATAGTATTCTGTAGGTTATTGCGA
GCCGTTGTCCTTCTCGGAGGATGTTAGCCATCGACGGTGCGTGTGTGTTG
TTGCTGTTGTTGTTGCTGTTGTTGTTGTTGCGGACGATGACGCGGGTTCT
CTCCTAGGTACCGTAGACTTTTGCGAGCTTTACTGCACCGAGGGATTGGT
GTGCTGTAGGTGCACTTGCCGTTGTACGACTACGAGTACTCTGCTGTACA
TAGTACTGTCGTCTGTCCAAGGGTTCCTGCTCACGTGACCCTTTGGGGGG
CCTCTGTTGGCTGCCCTAGATTTCGGTTGGTGGTGAGTGCGGGATGATTG
GGCTGTCCAGTATGGCTCCCGCATTCTCGGCGAGACGCTGCACCCGCCGG
GGCGATTTCGGGATAGCATTTGCTCGCCGGGTCCGTCCCCGGGGAATGGT
TCCTTCTTCCTGCTGTGCAGTACCGTACGAGTACGCACAACATGCTTGTC
CCACGCGAATCTGAGAACCCGATGAGTGTTTGGGGGGGGGGCTGGCCTTT
TTGTTACAGTAGCTCTCCGACACGTGCGGGAGGTACTGCACTGTGCTGCA
AGGTTATACTCGTACAGCACTCGTACGGCACTCGTACAGTACTTGTATTT
GAAGTACAAATACAGTACCACTCCGGAAACGATCATCCGGGGTCATCCAT
GGGAGAGATGGACTGTGCTATTCTACGGGTTTAGGTCACGGCTTTGTCCG
CCGCCGCCGCCGCCGCCGTGCACACTGCTGCGGTTGGGGGAGTGGGCATG
AGGGGGTTGCTCTGTCTCGCGTATTGTGCTGTACTGTAGAAGTACCGACT
TCATGTAATTCAAAGTACTGTACTGTACTGTACGGTACGGTACTGTACTG
TACTGCACGGTACTGCACTGCACTGCACTGTACCACACTGCAAGCGTGCG
TGCGCACACACGAACATATGCACACACTGATGACACGCGCGCATGCACCC
GCGCACACAGATCGACCCGGTGCGGGAGCTGCTGTACGTCAAGGGCGCCG
TGCCGGGGAACAAGGGGGGCTTTGTGCGCGTCACAGATGCGGTGAGGCGG
ATGCAAGCGAGAGGGGGAGAGACAAAGGGAGGGAGGGAGGGAGGGAGGGG
CAGCGAGTCAGTCCGTCCCTTGCGCCCTTTTCCGCCGCTGTTGCCCCCAT
GGTCGAGCAGGCAGTCGGTGTTGACGCTTGCTGCAGCTGGCCGTAGAGGA
CCTCTGCAGGGTGTGGTAGACTGATGGCACGCTGCTGTACTGTAAGCCCC
CTGGAGGGCCCTGTCCTTTTCCTCTGTGGTAGGGTGCCATTGCCGCCCTC
TCTGATCAAGAGATAGAGGGGCGGTTTTGCTTGTGTACGGTTCCAGGGAC
AGAGTGGTGCGCGGGGCTTTGCCGCGCTCTGGCCGTCGGCGCATGTATTA
TCCGACGAGGCATCAGAGGCTGGAGCCTTGGCTTCGGTCTCACTTCGATC
CTCCAGCGTGTGTTTTTATATACTTGCAAGGACCGGGCAAGCATTGTGTG
TGCTCACGTTGCGATCGGCTTGCTATTGTACCGCTGAACACGCGCCTCGA
CCGAGACGGAGCAGGCCGCTTGGATGACTTTTTTTCTCGTTCTCGGAAGT
ACTCGTACAGTATATCAGAACTCGGGCGGTGCTTGCCTTTAGTCCCCCGA
GACCGTTGACCTACGCAAGTACAACTACTACAGTAGATCCTCTTCGCCCG
TGTCCACGACGCTGCACAGTTACTGCAGTACTGTACAGTCGCTAGATGGC
ACTCTCTTTATCATGTCCACCAATGATGCTATGTACTTCAAGTACACGCA
AGTTTAACGTTAAATACGTGCCCGTCATCGTCGCCGCCGCCGCCGCCGCC
GCCCCCCCCGCTGCCGCCGCCGCCGCCGCGGACACAGGTGAAGGGGGCAT
GCTACCCTTCCGACCCGCCCTTCCCGTCGTACGAAGGCGGCGGGGACGAA
ACCGAGGAGCTGTGGTGCCCGCAGGGTGACGACGACCCCCTTCGAGACCC
CGACCTCGAATAGTTGCTGAGTCAGACTTGGAATCGCTTGGCGTTTTCGC
CGTTCAAAGTTAGTCCGGCGGTAGTAGTTGGAAGTACGCCGCTGTTGCAA
GTGTGCTACGAGTACAACATGGCGGCCAGTGGAGCTACTGTAGTGGATCA
TGTTCCCCGAGTCGTGGGTTCTCTGCAGCGGAGCGCCTTGGCCTCCATGA
TAGGGTTGCGCCTGTAGGGCCGTCGTTGGGTGGGCGCCGTTCCAGGCTTG
TATGTCGATCCGAAAAGGTATGGCAGTGCAGTCGCCAAAGTCCCGACGGT
TCTTGCCAAAGTCATCTGCAGGCGCGCTCCCTGTCCTCGGGGCTGAGGAT
GTCATTCGGCTGTGCCTCCACCTTCATCTCAGCATGTGGCCCAGGCTGTC
CTGCTTGCCCAGAGTCCGGAGATGGAGGTGGAGGCAGAGCAGGACGACAT
CCTTAGCCCTGAGGACAGGGAGCGCGCGCGCGCCTGCAGATGTCTTTGGG
AAAAACCGCCGGGACTTTGGCGACTGCACCGCCATACCTTTTCGGATCGG
CATCAAGCCTGGAACGGCGCCCACCCAATAACGGCCCTACAGGCGCAACC
CTATCATGGAGGCCAAGGTGGCCATGGGCCCATCCGGGCACGTTGTCCCT
TCTGGGAGCCGTGGTCGGTCTTGTCGACGCTGGACTGTGAGTGGATGGAA
ACGTACTCTCAAGTACGTGACTGCAGTACTTACGCTGTGCCAAGCACATG
CAATTTCATCCGCGCCCACCCCACCTGGAGTCCGCCCACAGCAGCGTAGC
CGCACTTGCTCTTTGTGCTGGGGGTGGGCGGGTGTATCCCCTGGAGGGGA
ACGGTAGGCACAACGGCGGGGTGTACACGCAGCCGTCAGCTGATTGCACC
GGGGTAATTGAAGACTAGATGCTGCAACAGAAAAACCAAAGAAAGCAAGA
AAACCAAATGGCCGCAGGCGTGAGGGGGCGAAAACCCCGCTCCGGAGCTC
AAGCCCTGCCGAGGCAGTCCTGCCGGGACGCCACCGGCCCCACCACGGGG
GACCCGCCCGCCTCGACCGAGTGGTCCCACGCCGAGGCTGGGACGCCGCG
GGCCGCCAACGCCGGGTCACCTGTAGCCGGTAGTCGACGTGCAGTACTAG
CAGGGCCCTACTGTAGACAGAGCCTCTGGCTATAGAGCAATTCAGGTACA
AACATCATTTTCAG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig15:2285191..2293254-

>mRNA_S-ischiensis_contig15.3806.1 ID=mRNA_S-ischiensis_contig15.3806.1|Name=mRNA_S-ischiensis_contig15.3806.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1908bp|location=Sequence derived from alignment at S-ischiensis_contig15:2285191..2293254- (Schizocladia ischiensis KU_0333)
ATGGACACGCTAGCGAGATGGACACGCTAGCGAGGGCGGTGCCGCGGATT
TGCCGCCGTGCGCGGCCGACCGGCGGCGCGTTGGCGCCACCGCCGGTATA
TCAGCAGTGCTTGTCGTCAGTGGCGGCGGCGGCTGTGGAGACCCCCGTCG
CTCCAAGCGGGGGGGGCGTGGGGCCGGCGGCGGGGACGTTGCCGATGGAG
AACCGGGAGTGGAGCCCAGAAGCACGGCGGTGTGGGATTCTGGCGATGAA
GGGCGGTGCCGCGGATTTGCCGCCGTGCGCGGCCGACCGGCGGCGCGTTG
GCGCCACCGCCGGTATATCAGCAGTGCTTGTCGTCAGTGGCGGCGGCGGC
TGTGGAGACCCCCGTCGCTCCAAGCGGGGGGGGCGTGGGGCCGGCGGCGG
GGACGTTGCCGATGGAGAACCGGGAGTGGAGCCCAGAAGCACGGCGGTGT
GGGATTCTGGCGATGAAGGTGGGGATGATGTCCGTTTTTGACTCGTGGGG
AGAGCGCCACGCGACCACTGTGCTGCAGGTGGACGCCTGCGATGTTCTGC
AGGTGGGGATGATGTCCGTTTTTGACTCGTGGGGAGAGCGCCACGCGACC
ACTGTGCTGCAGGTGGACGCCTGCGATGTTCTGCAGGTAAAAAAGGACGA
CACGGACGGCTACACGGCTGTCCAGACGGGGGTCGGCGAGCGCAAGCGCA
AGAACGTCGTCAAGCCGCTCATGGGCCACTTCGACAAGGTCGGGGTGGAG
CCCAAGCGGGAGGTAAAAAAGGACGACACGGACGGCTACACGGCTGTCCA
GACGGGGGTCGGCGAGCGCAAGCGCAAGAACGTCGTCAAGCCGCTCATGG
GCCACTTCGACAAGGTCGGGGTGGAGCCCAAGCGGGAGGTTCAGGAGTTT
CGCGTGACGCCGGACGCCTTGCTGCCACCGGGGTTCCGGATGAGGGCGCT
CCACTTTGTGCCGGGGCAGCTCGTGGACGTGTGTGGCACCACCAAGGGCA
AGGGATTCCAGGTTCAGGAGTTTCGCGTGACGCCGGACGCCTTGCTGCCA
CCGGGGTTCCGGATGAGGGCGCTCCACTTTGTGCCGGGGCAGCTCGTGGA
CGTGTGTGGCACCACCAAGGGCAAGGGATTCCAGGGTGCGATGAAGCGAT
GGGGTTTCGCTGGGCAGCCGGCTTCCCACGGGGTGTCCAAAACGCACCGG
CACATTGGATCGACGGGACAGTGCCAGAACCCCGGGAGGGTGTTCAAGGG
GAAAAAGATGCCGGGGCGAATGGGGGGCGACCGGCGCACCGTCCAGAACC
TGAAGATCCTCAAGGGTGCGATGAAGCGATGGGGTTTCGCTGGGCAGCCG
GCTTCCCACGGGGTGTCCAAAACGCACCGGCACATTGGATCGACGGGACA
GTGCCAGAACCCCGGGAGGGTGTTCAAGGGGAAAAAGATGCCGGGGCGAA
TGGGGGGCGACCGGCGCACCGTCCAGAACCTGAAGATCCTCAAGATCGAC
CCGGTGCGGGAGCTGCTGTACGTCAAGGGCGCCGTGCCGGGGAACAAGGG
GGGCTTTGTGCGCGTCACAGATGCGATCGACCCGGTGCGGGAGCTGCTGT
ACGTCAAGGGCGCCGTGCCGGGGAACAAGGGGGGCTTTGTGCGCGTCACA
GATGCGGTGAAGGGGGCATGCTACCCTTCCGACCCGCCCTTCCCGTCGTA
CGAAGGCGGCGGGGACGAAACCGAGGAGCTGTGGTGCCCGCAGGGTGACG
ACGACCCCCTTCGAGACCCCGACCTCGAATAGGTGAAGGGGGCATGCTAC
CCTTCCGACCCGCCCTTCCCGTCGTACGAAGGCGGCGGGGACGAAACCGA
GGAGCTGTGGTGCCCGCAGGGTGACGACGACCCCCTTCGAGACCCCGACC
TCGAATAG
back to top