mRNA_S-ischiensis_contig15.3805.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3805.1
Unique NamemRNA_S-ischiensis_contig15.3805.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig15.3805.1 vs. uniprot
Match: D8LM46_ECTSI (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM46_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 7.420e-63
Identity = 93/145 (64.14%), Postives = 125/145 (86.21%), Query Frame = 3 
Query:   39 MSGVVFEDIFHISRLNPHGKKFDRVNRLECKGVTYEMDLLLADINCEIYKVSENDRINVSLATTLDPAGAPDDGTYRPLGDEPTLADRFDYVMHGRIFKYEYQGEKQVSVLASFGGLLMKLTGDQRHLANLKLDSRIYCLIKQLA 473
            MSGV+FEDIF + +LNP GKKFDRVNRLECKGVTY+MDLLL D NC+IY V E +R+   +A+TLD +G PDDGTY+PLGDE +LAD+++YVMHGR+++++ Q + +V V ASFGGLLM+LTGDQRH+AN+++DSR++CL+++ A
Sbjct:    1 MSGVLFEDIFEVGKLNPDGKKFDRVNRLECKGVTYDMDLLL-DTNCDIYPVKEGERLTFVIASTLDLSGKPDDGTYKPLGDEVSLADKYEYVMHGRVYRFDQQKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRRNA 144
[Close]
BLAST of mRNA_S-ischiensis_contig15.3805.1 vs. uniprot
Match: A0A836CD84_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD84_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.800e-55
Identity = 90/145 (62.07%), Postives = 117/145 (80.69%), Query Frame = 3 
Query:   33 VTMSGVVFEDIFHISRLNPHGKKFDRVNRLECKGVTYEMDLLLADINCEIYKVSENDRINVSLATTLDPAGAPDDGTYRPLGDEPTLADRFDYVMHGRIFKYEYQGEKQVSVLASFGGLLMKLTGDQRHLANLKLDSRIYCLIKQ 467
            ++ +G++FED+F +++LNP GKKFDRVNRL CK VT+EMDLLL DIN EIY V +ND++++ L++TL   GAPDDGTYRP+  E TLA R++YVMHGR+FKYE     QV V ASFGGLLM+LTG+QRHL ++ +D RIY LI+Q
Sbjct:    1 MSSTGILFEDLFQVTQLNPTGKKFDRVNRLACKAVTFEMDLLL-DINSEIYTVRQNDKLSLVLSSTLALDGAPDDGTYRPIEHEETLASRYEYVMHGRVFKYEQLTGTQVQVSASFGGLLMRLTGEQRHLVHISIDQRIYLLIRQ 144
[Close]
BLAST of mRNA_S-ischiensis_contig15.3805.1 vs. uniprot
Match: A0A7S2U8S9_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U8S9_9STRA)

HSP 1 Score: 166 bits (420), Expect = 1.510e-46
Identity = 83/140 (59.29%), Postives = 106/140 (75.71%), Query Frame = 3 
Query:   51 VFEDIFHISRLNPHGKKFDRVNRLECKGVTYEMDLLLADINCEIYKVSENDRINVSLATTLDPAGAPDDG-TYRPLGDEPTLADRFDYVMHGRIFKYEYQGEKQVSVLASFGGLLMKLTGDQRHLANLKLDSRIYCLIKQ 467
            +FEDIF ++ LNP GKKF+RVNRL   G T+E DLLL DINCEIYKV E D++ + LA+TL   G+PDD  +++P   EPTLAD +DYVMHGRIF   Y+ +  V + ASFGGLLM+LTGDQRHL+N+  D R+Y L+K+
Sbjct:    9 LFEDIFEVTALNPEGKKFERVNRLAATGTTFECDLLL-DINCEIYKVLEGDKMTLVLASTLSLDGSPDDHFSFQPNSTEPTLADNYDYVMHGRIFDVGYKKDGVVVIAASFGGLLMRLTGDQRHLSNVMPDMRLYVLLKK 147
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BLAST of mRNA_S-ischiensis_contig15.3805.1 vs. uniprot
Match: K3X3H5_GLOUD (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=29 Tax=Oomycota TaxID=4762 RepID=K3X3H5_GLOUD)

HSP 1 Score: 161 bits (407), Expect = 1.050e-44
Identity = 74/143 (51.75%), Postives = 109/143 (76.22%), Query Frame = 3 
Query:   39 MSGVVFEDIFHISRLNPHGKKFDRVNRLECKGVTYEMDLLLADINCEIYKVSENDRINVSLATTLDPAGAPDDGTYRPLGDEPTLADRFDYVMHGRIFKYEYQGEKQVSVLASFGGLLMKLTGDQRHLANLKLDSRIYCLIKQ 467
            M+  +FEDIF + ++NP GKKFD+V R+ CKGV+YE++L L DIN E+Y++ +N++   +L +TLD  G PDDGTY   G +PTL DR+DY M+G++F+Y+++G   V++ ASFGGLLM L G+QRHL  +  D+RIYCL+++
Sbjct:    1 MASELFEDIFEVRQVNPDGKKFDKVTRVVCKGVSYELELTL-DINSEVYRLRQNEKFTFALVSTLDLEGKPDDGTYNQSG-KPTLLDRYDYGMYGKVFQYDHEGGNVVAIYASFGGLLMCLRGEQRHLHMIHNDTRIYCLLRK 141
[Close]
BLAST of mRNA_S-ischiensis_contig15.3805.1 vs. uniprot
Match: A0A7S1BC37_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BC37_9STRA)

HSP 1 Score: 159 bits (403), Expect = 4.360e-44
Identity = 75/139 (53.96%), Postives = 104/139 (74.82%), Query Frame = 3 
Query:   51 VFEDIFHISRLNPHGKKFDRVNRLECKGVTYEMDLLLADINCEIYKVSENDRINVSLATTLDPAGAPDDGTYRPLGDEPTLADRFDYVMHGRIFKYEYQGEKQVSVLASFGGLLMKLTGDQRHLANLKLDSRIYCLIKQ 467
            +FEDIF + +LNP GKKF R+NR++  G T++ DLLL D N EIY ++E ++I + L++TL   G PDDG Y   G EPT+AD ++YVMHGR+F  +Y+G+  ++V  SFGGLLM+LTGDQRHL N++ D R+Y LIK+
Sbjct:    7 LFEDIFVVKQLNPDGKKFSRINRIQATGTTFQCDLLL-DTNSEIYPIAEEEKITIVLSSTLSLDGRPDDGEYDQSG-EPTMADNYEYVMHGRVFDIKYKGDGVIAVHVSFGGLLMRLTGDQRHLENVRADERLYILIKK 143
[Close]
BLAST of mRNA_S-ischiensis_contig15.3805.1 vs. uniprot
Match: A0A7S2E8I0_TRICV (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E8I0_TRICV)

HSP 1 Score: 159 bits (402), Expect = 6.520e-44
Identity = 79/140 (56.43%), Postives = 104/140 (74.29%), Query Frame = 3 
Query:   51 VFEDIFHISRLNPHGKKFDRVNRLECKGVTYEMDLLLADINCEIYKVSENDRINVSLATTLDPAGAPDDG-TYRPLGDEPTLADRFDYVMHGRIFKYEYQGEKQVSVLASFGGLLMKLTGDQRHLANLKLDSRIYCLIKQ 467
            +FEDIF +  LNP  K FDRVNR+   G T++ DLLL DINCEIY ++E D+I + LA+TL+  G PDD  +Y P   EPTLAD ++YVMHGR+F   Y+GE  + + ASFGGLLM+LTGDQRHL++++ D R+Y LIK+
Sbjct:    7 LFEDIFLVKTLNPDRKVFDRVNRIAADGTTFDCDLLL-DINCEIYNLTEGDKITLVLASTLNLDGTPDDHFSYAPNPGEPTLADNYEYVMHGRVFDVAYKGEGVIVIAASFGGLLMRLTGDQRHLSSVQPDMRLYVLIKK 145
[Close]
BLAST of mRNA_S-ischiensis_contig15.3805.1 vs. uniprot
Match: A0A7R9WD29_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WD29_9STRA)

HSP 1 Score: 158 bits (400), Expect = 1.330e-43
Identity = 79/140 (56.43%), Postives = 103/140 (73.57%), Query Frame = 3 
Query:   51 VFEDIFHISRLNPHGKKFDRVNRLECKGVTYEMDLLLADINCEIYKVSENDRINVSLATTLDPAGAPDDG-TYRPLGDEPTLADRFDYVMHGRIFKYEYQGEKQVSVLASFGGLLMKLTGDQRHLANLKLDSRIYCLIKQ 467
            +FEDIF ++ LNP  K FDRVNR+   G T+E DLLL D+NCEIY + E+++I   LA+TL+  G PDD  +Y P   EPTLAD ++YVMHGRIF   Y+GE  + + ASFGGLLM+LTGDQRHL+ ++ D R+Y LIK+
Sbjct:    8 LFEDIFEVTTLNPDRKVFDRVNRIAATGTTFECDLLL-DVNCEIYDLRESNKITFVLASTLNLDGTPDDHFSYAPNPGEPTLADNYEYVMHGRIFDVAYKGEGVIVIAASFGGLLMRLTGDQRHLSQIQPDMRLYVLIKK 146
[Close]
BLAST of mRNA_S-ischiensis_contig15.3805.1 vs. uniprot
Match: A0A7S0CGW6_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CGW6_9STRA)

HSP 1 Score: 157 bits (397), Expect = 4.040e-43
Identity = 80/142 (56.34%), Postives = 102/142 (71.83%), Query Frame = 3 
Query:   42 SGVVFEDIFHISRLNPHGKKFDRVNRLECKGVTYEMDLLLADINCEIYKVSENDRINVSLATTLDPAGAPDDGTYRPLGDEPTLADRFDYVMHGRIFKYEYQGEKQVSVLASFGGLLMKLTGDQRHLANLKLDSRIYCLIKQ 467
            S  +FEDIF ++ LNP  K F+RVNRL   G T+E DLLL DINCEIY + E+DRI V LA TL+  G PDD        EP+LAD ++YVMHGR+F+  YQ +  +S+ ASFGGLLM+LTGDQRHL+ ++ D R+Y LIK+
Sbjct:    9 SMTLFEDIFEVTALNPEKKIFERVNRLAATGTTFECDLLL-DINCEIYSIQESDRITVVLAGTLNLDGTPDDHFSYTGQSEPSLADNYEYVMHGRVFEILYQKDGMISIHASFGGLLMRLTGDQRHLSAIQPDMRLYILIKK 149
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BLAST of mRNA_S-ischiensis_contig15.3805.1 vs. uniprot
Match: A0A024G723_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G723_9STRA)

HSP 1 Score: 156 bits (394), Expect = 2.650e-42
Identity = 75/143 (52.45%), Postives = 107/143 (74.83%), Query Frame = 3 
Query:   39 MSGVVFEDIFHISRLNPHGKKFDRVNRLECKGVTYEMDLLLADINCEIYKVSENDRINVSLATTLDPAGAPDDGTYRPLGDEPTLADRFDYVMHGRIFKYEYQGEKQVSVLASFGGLLMKLTGDQRHLANLKLDSRIYCLIKQ 467
            M+  +FEDIF + +LNP GKKFD+V R+  KGV+YE++L L DIN E++++ +ND+   +L +TLD  G PDDG Y   G + TL DR+DY M+G+IF+YE++G   V++ ASFGGLLM+L G+QRHL  +  DSRIYCL+++
Sbjct:   37 MATELFEDIFEVRQLNPEGKKFDKVTRVVGKGVSYELELTL-DINSEVWRLKKNDKFTFALVSTLDLEGKPDDGIYNQSG-KATLLDRYDYGMYGKIFQYEHEGGNNVAIYASFGGLLMRLRGEQRHLHLVHNDSRIYCLLRK 177
[Close]
BLAST of mRNA_S-ischiensis_contig15.3805.1 vs. uniprot
Match: A0A024TMY4_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=9 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TMY4_9STRA)

HSP 1 Score: 154 bits (390), Expect = 3.510e-42
Identity = 72/139 (51.80%), Postives = 104/139 (74.82%), Query Frame = 3 
Query:   51 VFEDIFHISRLNPHGKKFDRVNRLECKGVTYEMDLLLADINCEIYKVSENDRINVSLATTLDPAGAPDDGTYRPLGDEPTLADRFDYVMHGRIFKYEYQGEKQVSVLASFGGLLMKLTGDQRHLANLKLDSRIYCLIKQ 467
            +FEDIF I +LNP GKKF+RV RL CKGV+YE++L+L DIN E++ +  +++   +L +TLD  G PDDG +   G +PTL DR+DY M+G++F+Y+++G   V++ ASFGGLLM L GDQ HL N+   SR+YCL+++
Sbjct:    6 MFEDIFEIKQLNPEGKKFERVTRLMCKGVSYELELML-DINSEVFPMKVHEQFTFALVSTLDLEGKPDDGIFDQTG-KPTLLDRYDYGMYGKVFQYDHEGGNMVAIYASFGGLLMCLRGDQAHLRNIHNGSRVYCLMRR 142
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM46_ECTSI7.420e-6364.14DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A836CD84_9STRA1.800e-5562.07DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S2U8S9_9STRA1.510e-4659.29DNA-directed RNA polymerases I, II, and III subuni... [more]
K3X3H5_GLOUD1.050e-4451.75DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S1BC37_9STRA4.360e-4453.96DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S2E8I0_TRICV6.520e-4456.43DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7R9WD29_9STRA1.330e-4356.43DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S0CGW6_9STRA4.040e-4356.34DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A024G723_9STRA2.650e-4252.45Uncharacterized protein n=2 Tax=Albugo candida Tax... [more]
A0A024TMY4_9STRA3.510e-4251.80DNA-directed RNA polymerases I, II, and III subuni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:2268267..2272234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score209.5
Seed ortholog evalue1.1e-51
Seed eggNOG ortholog2880.D8LM46
Preferred nameRPB8
KEGG rclassRC02795
KEGG koko:K03016
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181,M00182
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000418,GO:0000419,GO:0000428,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006383,GO:0006396,GO:0006397,GO:0006399,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008380,GO:0008543,GO:0009058,GO:0009059,GO:0009301,GO:0009304,GO:0009452,GO:0009719,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0023052,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0032993,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036260,GO:0040029,GO:0042221,GO:0042795,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0090304,GO:0097159,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.transcription by RNA polymerase I
EggNOG OGsKOG3400@1,KOG3400@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-06_002430.1
Exons5
Model size1258
Cds size447
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815768.6376927-UTR-S-ischiensis_contig15:2268266..22683041622815768.6376927-UTR-S-ischiensis_contig15:2268266..2268304Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 2268267..2268304 +
1695739904.988322-UTR-S-ischiensis_contig15:2268266..22683041695739904.988322-UTR-S-ischiensis_contig15:2268266..2268304Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 2268267..2268304 +
1622815768.728348-UTR-S-ischiensis_contig15:2271461..22722341622815768.728348-UTR-S-ischiensis_contig15:2271461..2272234Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 2271462..2272234 +
1695739905.0607734-UTR-S-ischiensis_contig15:2271461..22722341695739905.0607734-UTR-S-ischiensis_contig15:2271461..2272234Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 2271462..2272234 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815768.6516335-CDS-S-ischiensis_contig15:2268304..22683771622815768.6516335-CDS-S-ischiensis_contig15:2268304..2268377Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2268305..2268377 +
1695739905.0065112-CDS-S-ischiensis_contig15:2268304..22683771695739905.0065112-CDS-S-ischiensis_contig15:2268304..2268377Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2268305..2268377 +
1622815768.6737146-CDS-S-ischiensis_contig15:2268816..22688671622815768.6737146-CDS-S-ischiensis_contig15:2268816..2268867Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2268817..2268867 +
1695739905.0175924-CDS-S-ischiensis_contig15:2268816..22688671695739905.0175924-CDS-S-ischiensis_contig15:2268816..2268867Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2268817..2268867 +
1622815768.6878095-CDS-S-ischiensis_contig15:2269346..22694681622815768.6878095-CDS-S-ischiensis_contig15:2269346..2269468Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2269347..2269468 +
1695739905.02893-CDS-S-ischiensis_contig15:2269346..22694681695739905.02893-CDS-S-ischiensis_contig15:2269346..2269468Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2269347..2269468 +
1622815768.7006476-CDS-S-ischiensis_contig15:2270273..22703481622815768.7006476-CDS-S-ischiensis_contig15:2270273..2270348Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2270274..2270348 +
1695739905.038694-CDS-S-ischiensis_contig15:2270273..22703481695739905.038694-CDS-S-ischiensis_contig15:2270273..2270348Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2270274..2270348 +
1622815768.7170029-CDS-S-ischiensis_contig15:2271335..22714611622815768.7170029-CDS-S-ischiensis_contig15:2271335..2271461Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2271336..2271461 +
1695739905.0501184-CDS-S-ischiensis_contig15:2271335..22714611695739905.0501184-CDS-S-ischiensis_contig15:2271335..2271461Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2271336..2271461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3805.1prot_S-ischiensis_contig15.3805.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 2268305..2271461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3805.1

>prot_S-ischiensis_contig15.3805.1 ID=prot_S-ischiensis_contig15.3805.1|Name=mRNA_S-ischiensis_contig15.3805.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=149bp
MSGVVFEDIFHISRLNPHGKKFDRVNRLECKGVTYEMDLLLADINCEIYK
VSENDRINVSLATTLDPAGAPDDGTYRPLGDEPTLADRFDYVMHGRIFKY
EYQGEKQVSVLASFGGLLMKLTGDQRHLANLKLDSRIYCLIKQLARGS*
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mRNA from alignment at S-ischiensis_contig15:2268267..2272234+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3805.1 ID=mRNA_S-ischiensis_contig15.3805.1|Name=mRNA_S-ischiensis_contig15.3805.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3968bp|location=Sequence derived from alignment at S-ischiensis_contig15:2268267..2272234+ (Schizocladia ischiensis KU_0333)
GCCAAAGTGGAGCTCGTGATAATTAATTGCTTGTGACCATGTCCGGGGTC
GTGTTCGAGGATATCTTCCATATCAGTCGCCTCAACCCACATGGGAAAAA
GTTCGACAGAGGTGCGTCACGATGCCCAGCCACGCCGGTCCAGCCGCAAG
CTGTGACCGTGTTTATTTGCTCGCAAAACATCACATCAACTGATATGGAG
CCCATGGTTTTGTCCTGAACCTTGCTCCGCCGTTTTCTTGTTTCGGTCCA
ATTTTAAGAGGGAACACTGAACGGTCCGTCGCGCTGCGAGGTGGATACGA
GTAATGCTGTACCTGGACTAGAGGAAAACTCCACCACTATCAAGCCACCC
TCCATACTATAGTTGGTCAGATGTCAGAGGGCCACACAAACTTGCTCAGC
GACGTTCCAGCAGGGCGGCTGACTGGCTGGATGTCCTCTCGGTCGGCCTG
TGTGCTGCCTCTGAGTTATCCAGACGCGCCACAACCCTTACGTTTCTGGT
CCTGCCTGCCGGGCCTGCCGCCCTCACGCCCGCCGCCCGCTCTCCCGCAG
TGAACCGTCTGGAGTGCAAGGGAGTCACATACGAGATGGATTTGTTACTC
GGTGAGTGTTTCGCGGGTCCGTGCTCGATGCTCCATGCCCTCCTGGGATG
TTGCAGACCGGCTTTGTGCGCTGCCGGCGGAAAAAATCCCGGCCGCCCGC
CTGGTCGCGCGTGCGTGCGTGCGTGTGTGCTGCGCCAATGTGTGTGCGGT
CTTGGTGGTTTCCTTGCGTGGCCGTGTACAGCATGTGGAAACGGCCAGGC
CGGCCATGGTTTTCGTACTGTTATGGCTTGCCGTAGCCAGCGGCGGTCCC
CTGAGCAATATTTAGTGTGTGTTGCGTCCCAGACGGCCCGGCCGTCCCGG
TTGTGGTGAGCCGTGCTGGCTTGATCCGTCTCACGGCTCAAGCGCCCCCC
TTCCGCCCACCTGTTACTTAGCACTCAATCAGCCACCCGTCCCCACACGC
TCGCTTTGCCCGTGCTGGCACCTCGTGGCTCCGCCGCCGCCGCCGCCGTC
ACCACCGGAATTCGCCGCGGAATGCACAAGCAGACATCAACTGCGAAATA
TACAAGGTGTCGGAGAACGACCGGATCAACGTTAGCCTCGCTACCACGCT
GGATCCCGCGGGGGCTCCGGACGACGGAACGTACCGGCCTTTGGGGGATG
AGGTGCGTGCCCGGTGTGATCACGAGAGCTGGGAGAGAGAGGGGGGGGGG
GGAGGGAGAGGGAGAGAGGGTGAGAGGGTGAGAGAGAGGGAGGGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGTTCGGGGGGTTGGCG
TGGTGCCGCCTGTTGCAGAGGCACATGCATGGCTGCTTCCGTTGCATGTC
TGCTTCAGCAGGCCCCTTGGTGCATACCGCGCTTTTTCTGGCTGGTGCAA
GTACTTTGAAGTACCCTTGAGACCATTGGCAAAAGAAAAAAGAACGCGAG
AGCTGAGCGGCTGCCGCACTTTTGCCGCAGTTTCTTTTTTGTGTTGTGGC
ATGATTGCTTTTACTCCCCGTGCCTTGTCAGAGGCCAATGGTCTCGGGGC
TATCCAATGTATGGCAAGCACAGTGTACTCGGAGGCTCTCGCGTGCAGAA
CGCGGCGCTTTTACTTCGAGTCACTAGTACTCCAGTACGAGTACATGCTC
AATAACAACTCAACAAAAATAACCCACTGTCGCTTCGACAAGCACAAGCG
AGGCCGATGTATCAAATACCTCGCGAGGCAAAAACAACGGGGGAATTGAG
TAGTCCAGAGACACGGCACAGATGCGGCAAGTCAGCAGGCCGAGGGCATG
GCCCGCGGCCACGCCACTTCCCTTTGATCCCCGACCCATTCCAACTGTCT
GCTTCTTCCCCCCCCCCACCCCCCCGCCCCCGGTTCCCACTATTGTTTGC
CTGGCCGGCCCCCGCCTGTCTCTCTCCCGCCGGTCGTGTTTGTTCCTCTC
GCCGCAGCCAACGCTGGCAGATCGGTTCGATTACGTCATGCACGGACGGA
TCTTCAAGTACGAGTACCAGGGGGAAAAGCAGGTATGGCGTGATGCAAGC
GCGCTGCCGGGGGGGGGGGGGGGGTCGTGTGACAAAGTGATTTGTACCCG
TACCGAGTACCGCACTTATTTACTGCGGTAGTGCTAGAGTGGTAAGTTCT
TCGTAGATGTTGGGCAATGGTGTCGGGACTGTGGCTTCCGCACACCTATT
TGTAGGTGCTTCGTAGGTAAGTACGAGTAGGTGCTTTAGATGTACAAGTG
CTTGGAACTGCTTCGTTCATTCACGGAAGAGTGCCTCCCGCCTGAAGCGC
TTGCTCTTGGAATCCGGAGCTTTGACCCTCAGCAGCACGGTCAGCGGCAG
GTGTCGCGCTTCTGGGAGCCGTGTGCGCCTTTGTCTCTTCCGTCTCCCTC
CAGAGAGCTTGGGGGGTGCCGGGCCCGCGACGCGCGGGAGTGCGACTGCC
GGTGTCTCTCCCTATATATATGTACCCACTCACATGGTGCTTGCCGTAGT
CCCGAGACCATTGACCACGCGCCTCGGTCTATATATGTTTTTTACCCGCT
TGTTTGACGAGACCAAGTGACGTTCAACTACTACTACTGTAGACGTTGTA
CTGTAGTAGCACTGACAGTAGTAGTCCTACTCTACATATACAAGTACACT
CGCCCGTACATCTCCAGGCGCTTGGAGGGGGCACGCGTGCTGTCGCAGTG
GCTTGTGCAGAACCGCAGTAAAGTACAGCGCCTACTCGTGCAGTAGATAG
AAGACCGAGCAGTGTACTGTATCTCCAAGCTGCTGCTGCTTCAACCCTCG
CACAGTAGTACTTTCGGAAGTGCCTACTGTACATACAGGACGTGCCTATG
TAGGTGCCGACTGTACGTGGAAGAACGTACACTGTTTTGAAGCATACATC
TGATGCATACTACAGCAACGTTACCCACCGTGCGCCCTGCCATCCCCCCC
ACTCTGCCCTGTCTGCTGGCACGTGCGCCCCTCCCTCGCTTCGCCTGTCG
CCTCCCTCCTCCGCAAAAGGTGTCCGTGCTTGCTTCGTTTGGAGGACTTC
TCATGAAGCTGACGGGGGACCAGCGACACCTGGCCAATCTCAAGCTGGAC
TCGCGGATATACTGCCTCATCAAGCAGTTGGCCCGCGGCAGCTGACCGGC
CGACACACTGCCGGCACGGGGTCCAGCCTGGGCCGCGAGCTGTGGCCTAA
CTTAGCACTAGAAAAAGTTGGCAGGGCTTAGCACACAGCGACGGGCGAGG
GCAATGCTGTCACAGTGGCTGTGCAAGGGCGCCCATCACGCCCCGGCATG
GCTGTGACAGTGCGTGCGCTCGCTCGGCAGCTAAGAAAGTACTCGTAGGT
ACTGTTACATAGCTGGTAGTCGGCTGATCGAGCCTGGAAGCTTGAGCAGC
ACAGGTCTGCCGGCCCGCCCGGCCCGGGGTCCTCGGACAGCTCTGAACGC
GGCCGGGCCCCCTAAGCCACTTCGGGGGTGTGAACTCGTGCCATATATTC
ACGTATTCGAGTACTTCCTTAGCAGTAGTTGACCCTTGGAGGACAGCGGT
TCACTATTTCTTGCTAAACTCCAAGTGGTACATTCCGAACGAAGCAGCTA
GTGTAGAGCTCCAGCGTATCGCCATCCGGTCACCTGGTGGGACCTGCATT
TCCGTGGCCACCCCCCGGCGGGGGTGGGCCTCCGGCGAACCCATGGGTGC
TGGACACAGGCGACTGGTGCATGCAGTGCTCCGCGGACCTGCGGACGTGA
GGTGGGGGTGGCCACTGCAGCTGTCGTCACGGTGTGCAAACTTGGCTGTG
CCCCGACTTTAATCGGTAAATGCACGCGAGTTCAAGTCTCTAGCGGTACT
CGAGGTGTGTATGTTGCGCATCTACCTTGCCTGATGGTAATTTTAATAGT
ACAGTAGTCGTTCCCAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig15:2268267..2272234+

>mRNA_S-ischiensis_contig15.3805.1 ID=mRNA_S-ischiensis_contig15.3805.1|Name=mRNA_S-ischiensis_contig15.3805.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=894bp|location=Sequence derived from alignment at S-ischiensis_contig15:2268267..2272234+ (Schizocladia ischiensis KU_0333)
ATGTCCGGGGTCGTGTTCGAGGATATCTTCCATATCAGTCGCCTCAACCC
ACATGGGAAAAAGTTCGACAGAGATGTCCGGGGTCGTGTTCGAGGATATC
TTCCATATCAGTCGCCTCAACCCACATGGGAAAAAGTTCGACAGAGTGAA
CCGTCTGGAGTGCAAGGGAGTCACATACGAGATGGATTTGTTACTCGTGA
ACCGTCTGGAGTGCAAGGGAGTCACATACGAGATGGATTTGTTACTCGCA
GACATCAACTGCGAAATATACAAGGTGTCGGAGAACGACCGGATCAACGT
TAGCCTCGCTACCACGCTGGATCCCGCGGGGGCTCCGGACGACGGAACGT
ACCGGCCTTTGGGGGATGAGCAGACATCAACTGCGAAATATACAAGGTGT
CGGAGAACGACCGGATCAACGTTAGCCTCGCTACCACGCTGGATCCCGCG
GGGGCTCCGGACGACGGAACGTACCGGCCTTTGGGGGATGAGCCAACGCT
GGCAGATCGGTTCGATTACGTCATGCACGGACGGATCTTCAAGTACGAGT
ACCAGGGGGAAAAGCAGCCAACGCTGGCAGATCGGTTCGATTACGTCATG
CACGGACGGATCTTCAAGTACGAGTACCAGGGGGAAAAGCAGGTGTCCGT
GCTTGCTTCGTTTGGAGGACTTCTCATGAAGCTGACGGGGGACCAGCGAC
ACCTGGCCAATCTCAAGCTGGACTCGCGGATATACTGCCTCATCAAGCAG
TTGGCCCGCGGCAGCTGAGTGTCCGTGCTTGCTTCGTTTGGAGGACTTCT
CATGAAGCTGACGGGGGACCAGCGACACCTGGCCAATCTCAAGCTGGACT
CGCGGATATACTGCCTCATCAAGCAGTTGGCCCGCGGCAGCTGA
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