mRNA_S-ischiensis_contig15.3523.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3523.1
Unique NamemRNA_S-ischiensis_contig15.3523.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig15.3523.1 vs. uniprot
Match: A0A7S2AZ30_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AZ30_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.140e-12
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:   22 RRVELQQEMEAEFLEQLVRGRPGLPSALRAEAREKVRRRMGEAVDAALSRRDQVLLPGNSRFGRIKAVPHCVACDRPLQNKAR 270
            RR E++++M  E L +  + RP    ALR EAR K   R+ EAVD AL++ + V+   N+RFGR+KAVP CVACDRPL  + R
Sbjct:    7 RRAEMREQMRVEVLREAAKIRPST-GALRIEARSKFCVRLMEAVDVALTKYETVVTLTNTRFGRVKAVPTCVACDRPLPTRKR 88
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BLAST of mRNA_S-ischiensis_contig15.3523.1 vs. uniprot
Match: A0A7S1TRI2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRI2_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.790e-11
Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:    1 SDDEVAARRVELQQEMEAEFLEQLVRGRPGLP---------SALRAEAREKVRRRMGEAVDAALSRRDQVLLPGNSRFGRIKAVPHCVACDRPLQNKARARDA 282
            ++DE+  RR +++ E+  + LE  +R    LP         SA++ EAR K  +++ EA+D ALS+ DQVL+P  SRFGR+  +P CVACDRPL+ K   ++A
Sbjct:  378 ANDEMGQRRAQVRDELVFQ-LETTMRRMDELPHKPQLHKRHSAVKQEARRKFAKKLEEALDIALSKIDQVLIPNASRFGRVANLPVCVACDRPLRTKMSRKEA 479
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BLAST of mRNA_S-ischiensis_contig15.3523.1 vs. uniprot
Match: A0A7S3XTU6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTU6_HETAK)

HSP 1 Score: 61.2 bits (147), Expect = 7.120e-8
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:   94 PSALRAEAREKVRRRMGEAVDAALSRRDQVLLPGNSRFGRIKAVPHCVACDRPLQNKARARDAMGQ 291
            P ALRAEAR    R++ +A+D ALS+ DQVL+P  +RF   +  P C+ACDRPL  K R ++   Q
Sbjct:  205 PGALRAEARGVFHRKLRDALDTALSKHDQVLMPSYTRFEGTRP-PVCIACDRPLGAKRRVKELAPQ 269
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BLAST of mRNA_S-ischiensis_contig15.3523.1 vs. uniprot
Match: K0S2S6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S2S6_THAOC)

HSP 1 Score: 53.5 bits (127), Expect = 3.810e-5
Identity = 37/99 (37.37%), Postives = 60/99 (60.61%), Query Frame = 1 
Query:    1 SDDEVAARRVELQQEMEAEF---LEQLVRGRPGLPSA----LRAEAREKVRRRMGEAVDAALSRRDQVLLPGNSRFGRIKA----VPHCVACDRPLQNK 264
            ++D++  RR  L +E++++    LE+L+    G+ S     LR EAR     R+ +AV+AAL++ DQ+LLP  +  GR++     V  CVACDRP++ K
Sbjct:  672 AEDDMLERRAGLCEELKSDVGAALEKLIAEERGVVSTRGLGLRWEARAIFLARLVDAVEAALTKHDQILLPAATSLGRVRPLSANVTVCVACDRPMRRK 770
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S2AZ30_9STRA2.140e-1249.40Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1TRI2_9STRA3.790e-1141.75Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3XTU6_HETAK7.120e-848.48Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
K0S2S6_THAOC3.810e-537.37Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:447007..449227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size522
Cds size519
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3523.1prot_S-ischiensis_contig15.3523.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 447007..449225 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815733.4476347-CDS-S-ischiensis_contig15:447006..4470571622815733.4476347-CDS-S-ischiensis_contig15:447006..447057Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 447007..447057 +
1695739882.8662071-CDS-S-ischiensis_contig15:447006..4470571695739882.8662071-CDS-S-ischiensis_contig15:447006..447057Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 447007..447057 +
1622815733.4603798-CDS-S-ischiensis_contig15:447752..4478271622815733.4603798-CDS-S-ischiensis_contig15:447752..447827Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 447753..447827 +
1695739882.8751757-CDS-S-ischiensis_contig15:447752..4478271695739882.8751757-CDS-S-ischiensis_contig15:447752..447827Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 447753..447827 +
1622815733.4729426-CDS-S-ischiensis_contig15:448272..4483651622815733.4729426-CDS-S-ischiensis_contig15:448272..448365Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 448273..448365 +
1695739882.885008-CDS-S-ischiensis_contig15:448272..4483651695739882.885008-CDS-S-ischiensis_contig15:448272..448365Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 448273..448365 +
1622815733.4862835-CDS-S-ischiensis_contig15:448925..4492251622815733.4862835-CDS-S-ischiensis_contig15:448925..449225Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 448926..449225 +
1695739882.894754-CDS-S-ischiensis_contig15:448925..4492251695739882.894754-CDS-S-ischiensis_contig15:448925..449225Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 448926..449225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3523.1

>prot_S-ischiensis_contig15.3523.1 ID=prot_S-ischiensis_contig15.3523.1|Name=mRNA_S-ischiensis_contig15.3523.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=173bp
SDDEVAARRVELQQEMEAEFLEQLVRGRPGLPSALRAEAREKVRRRMGEA
VDAALSRRDQVLLPGNSRFGRIKAVPHCVACDRPLQNKARARDAMGQDNL
RQSPHGPPHPRPGAKGPGPGSGPGPGPATGPGPGPGAGPRPTPQSGFESG
ERPSRPGLGRASGLGEAGGSKLG
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mRNA from alignment at S-ischiensis_contig15:447007..449227+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3523.1 ID=mRNA_S-ischiensis_contig15.3523.1|Name=mRNA_S-ischiensis_contig15.3523.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2221bp|location=Sequence derived from alignment at S-ischiensis_contig15:447007..449227+ (Schizocladia ischiensis KU_0333)
AGCGATGATGAGGTTGCCGCACGCCGCGTGGAGCTGCAGCAGGAAATGGA
GGTGTGTGCATGCGCTTACTGTACAGTACAGTTGTTATCAGCCGCTGCAC
TGTACTGTACGGTACGTTGCGGCACAGTACGGTACAGTGCGGTACAGTAC
AGTCCAGTACTGGGACGCGAGGACGCAGCCCAAGTGTGAGATACTAGAAG
CGAGTAGGTGCGGGCCATGCCACAAAACCTAATGGCTTCCACAGAGGGCC
TTCCTTTACGACTTGCTCACCAAGGAGTGCTTCGGAAGTACGAACTCGTA
CAAGAAACAAGTACCACCTGCTGTACTCAAAAGAGCAAACCAGCGCGGGA
GGAAGTTGGGGGTGGGCAAGGAGGAGGAGGAGGAGAGGGAAAGAGGAGGA
GAAATGTGCTGTACTCGTAGATCTAGAGTATAGTACTGCAGTGTAGTACA
CAGCTGTAGAGTACTACTGTACTCGAGTACAGTACGGCACAGTACTGGAC
GGTAGTACTTCCGGAAGCACAGTAGTGTAGGCAGTGTAGGTACAGTAGTG
TACCGTACTTGTGATGCGAGAGTACAGCTCATGGACTACACCGTCTGCAA
TTGTACTGCACAGTACTTCCTTCCGGAAGCAATACACGGCACTTGGAGTT
CAAGGACAGTACAAGTACTCTTGGACGATTGAGACAAAAACCGGCACCCC
CCTCCTTCCCTTGTCCAATCCCCAAACAACCTGAACGTGCATGCAGGCAG
AATTCCTGGAACAGCTTGTCCGGGGCCGTCCGGGCCTCCCCAGCGCACTG
CGGGCGGAGGCGAGGGAGAAGGTGTGTAGCGCACTGTACCTGCTGCGGTA
TGGTACAGTGCAGTACAGCAATAGTGTGCACTGTGCATGCATGCATCTTT
AACACTCCCAGAGAATACAGTAAAACACCGAGCGATGTGCGGTCCGCGTT
GATACAGTATAGTGAACTATTGTGCTCTACTCTAGCAGTTGCTGTACTTT
GTTTGAACACCCTCCGGAGGCAGCTGACTGCTACGAGTACTTGCCTACAC
TGAAGGATTGATGGTACTTGCTACAGTCCACTACTGTGCTACTTTGAACT
ACTGTGCTACTTTGAAGTACAAGCAGTGCAATGCGTTATTGCACATCACA
TCACGTGACATTGCAAATTGCTCGCACGACAAGGATCACCCCCCAACCGC
AATCCCCCGGGCATCGTGGCCCGCCCCCCGCCTGTTCTGTCTGTACTCGT
ACAAACTGTACAATAGGTGCGTCGCCGGATGGGTGAGGCGGTGGACGCAG
CGCTGTCTCGAAGGGACCAAGTTCTGCTGCCCGGGAACTCACGCTTTGGG
AGGATAAAGGTAAGTACTTCGAAGTACTGCAGTATGTACTGTAGAGAAAC
TCTACTTGGTAGAGGACAGTGGCATGCACTTCGAAGTATTTCCCAAGAAC
ATGGTACAGAGTACTGAAGGTGCTGTATGGGGCCCGTCTGAAGTATCAGC
AAGCAGCGGTTACTGTATCCTGCTGTCGCCGTCAGTTATATGTACTGTAC
TTGGAAGCACGTTTTCCAAGTACGTGTACTTCACTGCCTGTGCTTTGTGA
TAAGACACCTCTCTGGCAAGACAGAGGGTCCATTGACAAAGTATTGTGCA
CCTCTCCTCCGCTGGCGGATGCGTGCCCCCCCCTCCCACCGTGGCTCTGC
CAGTGAAGGGAGGGGGCCTGCTCTGTCTCGGTCGAGGCGCGGTGTCAATG
GTCTCGGGACTACGGCAAGCACAGCGTGAGTACATATACATGTGTGTGTT
TTTCATGTATCTTGTGCTGTACGAGTGTGAGGAAAGGTTCTCTCTTGCTG
TTCTCGAGTCCTACAGTACATACTTCGAGGTACTTCGAATCCTTATCACC
CCCTCCTCCCCATCCGCAGGCCGTGCCACACTGTGTGGCTTGTGACCGCC
CCCTGCAGAACAAGGCTCGGGCCAGGGACGCCATGGGCCAAGACAACTTG
CGTCAATCCCCCCATGGGCCACCACACCCTCGCCCAGGTGCCAAAGGACC
AGGACCGGGGTCAGGACCAGGACCAGGACCAGCGACAGGACCGGGGCCAG
GGCCGGGGGCGGGACCAAGACCAACCCCACAGTCAGGTTTCGAGTCGGGG
GAACGTCCCTCACGGCCGGGGCTTGGCCGCGCCTCTGGGCTGGGCGAGGC
AGGGGGGTCGAAGCTCGGCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig15:447007..449227+

>mRNA_S-ischiensis_contig15.3523.1 ID=mRNA_S-ischiensis_contig15.3523.1|Name=mRNA_S-ischiensis_contig15.3523.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1038bp|location=Sequence derived from alignment at S-ischiensis_contig15:447007..449227+ (Schizocladia ischiensis KU_0333)
AGCGATGATGAGGTTGCCGCACGCCGCGTGGAGCTGCAGCAGGAAATGGA
GAGCGATGATGAGGTTGCCGCACGCCGCGTGGAGCTGCAGCAGGAAATGG
AGGCAGAATTCCTGGAACAGCTTGTCCGGGGCCGTCCGGGCCTCCCCAGC
GCACTGCGGGCGGAGGCGAGGGAGAAGGCAGAATTCCTGGAACAGCTTGT
CCGGGGCCGTCCGGGCCTCCCCAGCGCACTGCGGGCGGAGGCGAGGGAGA
AGGTGCGTCGCCGGATGGGTGAGGCGGTGGACGCAGCGCTGTCTCGAAGG
GACCAAGTTCTGCTGCCCGGGAACTCACGCTTTGGGAGGATAAAGGTGCG
TCGCCGGATGGGTGAGGCGGTGGACGCAGCGCTGTCTCGAAGGGACCAAG
TTCTGCTGCCCGGGAACTCACGCTTTGGGAGGATAAAGGCCGTGCCACAC
TGTGTGGCTTGTGACCGCCCCCTGCAGAACAAGGCTCGGGCCAGGGACGC
CATGGGCCAAGACAACTTGCGTCAATCCCCCCATGGGCCACCACACCCTC
GCCCAGGTGCCAAAGGACCAGGACCGGGGTCAGGACCAGGACCAGGACCA
GCGACAGGACCGGGGCCAGGGCCGGGGGCGGGACCAAGACCAACCCCACA
GTCAGGTTTCGAGTCGGGGGAACGTCCCTCACGGCCGGGGCTTGGCCGCG
CCTCTGGGCTGGGCGAGGCAGGGGGGTCGAAGCTCGGCGCCGTGCCACAC
TGTGTGGCTTGTGACCGCCCCCTGCAGAACAAGGCTCGGGCCAGGGACGC
CATGGGCCAAGACAACTTGCGTCAATCCCCCCATGGGCCACCACACCCTC
GCCCAGGTGCCAAAGGACCAGGACCGGGGTCAGGACCAGGACCAGGACCA
GCGACAGGACCGGGGCCAGGGCCGGGGGCGGGACCAAGACCAACCCCACA
GTCAGGTTTCGAGTCGGGGGAACGTCCCTCACGGCCGGGGCTTGGCCGCG
CCTCTGGGCTGGGCGAGGCAGGGGGGTCGAAGCTCGGC
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