mRNA_S-ischiensis_contig15.3462.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3462.1
Unique NamemRNA_S-ischiensis_contig15.3462.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:39221..40784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size304
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.8533628-CDS-S-ischiensis_contig15:39220..393071622815731.8533628-CDS-S-ischiensis_contig15:39220..39307Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 39221..39307 +
1695739882.0181258-CDS-S-ischiensis_contig15:39220..393071695739882.0181258-CDS-S-ischiensis_contig15:39220..39307Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 39221..39307 +
1622815731.863613-CDS-S-ischiensis_contig15:40569..407821622815731.863613-CDS-S-ischiensis_contig15:40569..40782Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 40570..40782 +
1695739882.0267015-CDS-S-ischiensis_contig15:40569..407821695739882.0267015-CDS-S-ischiensis_contig15:40569..40782Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 40570..40782 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3462.1prot_S-ischiensis_contig15.3462.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 39221..40782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3462.1

>prot_S-ischiensis_contig15.3462.1 ID=prot_S-ischiensis_contig15.3462.1|Name=mRNA_S-ischiensis_contig15.3462.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=100bp
KRRESKGEPVPEEERLANEAKNKEYESSMLAEKVMLVQQWTAAARALLHG
KSSPTTNRGDPRGTRRRKDGNKSGDDEAAYEKLQALLERAEEVQGAGRGQ
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mRNA from alignment at S-ischiensis_contig15:39221..40784+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3462.1 ID=mRNA_S-ischiensis_contig15.3462.1|Name=mRNA_S-ischiensis_contig15.3462.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1564bp|location=Sequence derived from alignment at S-ischiensis_contig15:39221..40784+ (Schizocladia ischiensis KU_0333)
AAGAGGAGAGAGTCTAAGGGGGAGCCGGTGCCAGAGGAGGAGCGCCTGGC
TAACGAGGCCAAGAACAAGGAGTACGAGAGCAGCATGGTGGGCCATACTA
CTTGGGTATACAGTACAGTGCAGTACAGCTCTTGTTGTTGTACTCGAGTA
CTCAGTACTTTAAAGCAGTGTACTGTGGTAGTAGAAGTAGTATGAGGACA
TGATAGTGTATGTACTGAGTAGACAACATTGCGTGCTTGGTCGACAGCCC
AATTTTGTTGCAACAAGACAAGCAAGCGAGCTTGCAGTACAGAAGAGGTG
TCCCTACATATGCGAGTTCGGGGACCCCTACCCCCGGTCGTTCACTTGCC
TAAAGCTAGACTTGGGGTCTGCCCTCCAACCTCTAGCTTGTACAAGACTC
TTGCTCCGTCAACGGCGATTTGTTGCAAGTCTCGTTGTGCTTGCAAGCAC
AGTTTATTTTACCTGGGCATATACGCATACCAGGCATTCGCATTCCAACC
AGGTTGGGACTGGGCTTGCTATGCCTACTGTAGGTTTGCACCGGCCAGTG
GCCTGCCACTGGCCAAGCCCGGAATGCCTGCAGTACAGTCGGCAAGCTGG
ACGAGGGGCCGCTTGCTAGACTACGACCAAGCCTAGTTGTCGGCGAGTAC
TTGTGAGTCTCTTTGCAGAGTTGCTCTTGGGCGCATCGGCAGTCTAATAG
TCACGGGAGGATCAATTGGGATGATTCATTCCGACCGCCAGGTCGCCGGA
CAATGCCCGAGTACTGTACTGTACTGTATTGATCGTACAGTAGGTACGTT
GCTACTGTACTGTACTACAGTACTTGCACTGTAGGTACTACTGTACTACA
GTACTTGCACTGTAGGTACATCACTTCCGCTGTAGTAGTGCACTACTGGA
GTCCGAACCCGAAGCATGTTGTAGGACTGATTGGGTTATTTAGAAGTACT
CGCTTCCTTACCGTAAGGTAGAGATATGGTCAATGGTCTCGGGACTACGG
CAAGCACAACGTAGGTACAGAAATAAGGTAGCGCTATACTGTAGCGCATT
CAGTCCACCTCTAACTAGTGTAGTGTAGTGTAGTAATAGTATTGGCCGGA
ACAACACAGGGCGAGGTGCAGGCCACGTCACTAAAGACCTCAGCAGTGGC
CCTTCCTTATAGCTCGCCAGGGGAAATTTGTGTGGGGAAGGGGAGGTGGA
CAGGGATGAGGAGGAGGAGTAGTTGGATTGTTTACTCCAACCAGTTCTCT
CACGCTGCCCTGGCTGTCCCAGTGCACCTTAACAACTCAGGCCCTAGCCC
TCCTCCCCTCCGCCTGCCTGTTTGTATCCCCCTCCACACACACACACAGC
TGGCTGAGAAGGTGATGCTGGTCCAGCAGTGGACGGCCGCTGCACGTGCC
CTCCTCCATGGCAAATCATCGCCCACAACTAACAGGGGCGATCCCAGGGG
CACGCGAAGGCGCAAAGATGGAAATAAAAGCGGGGACGACGAGGCGGCGT
ATGAGAAGCTGCAGGCTCTGCTGGAAAGGGCTGAGGAAGTACAGGGTGCA
GGTCGGGGTCAAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig15:39221..40784+

>mRNA_S-ischiensis_contig15.3462.1 ID=mRNA_S-ischiensis_contig15.3462.1|Name=mRNA_S-ischiensis_contig15.3462.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=600bp|location=Sequence derived from alignment at S-ischiensis_contig15:39221..40784+ (Schizocladia ischiensis KU_0333)
AAGAGGAGAGAGTCTAAGGGGGAGCCGGTGCCAGAGGAGGAGCGCCTGGC
TAACGAGGCCAAGAACAAGGAGTACGAGAGCAGCATGAAGAGGAGAGAGT
CTAAGGGGGAGCCGGTGCCAGAGGAGGAGCGCCTGGCTAACGAGGCCAAG
AACAAGGAGTACGAGAGCAGCATGCTGGCTGAGAAGGTGATGCTGGTCCA
GCAGTGGACGGCCGCTGCACGTGCCCTCCTCCATGGCAAATCATCGCCCA
CAACTAACAGGGGCGATCCCAGGGGCACGCGAAGGCGCAAAGATGGAAAT
AAAAGCGGGGACGACGAGGCGGCGTATGAGAAGCTGCAGGCTCTGCTGGA
AAGGGCTGAGGAAGTACAGGGTGCAGGTCGGGGTCAACTGGCTGAGAAGG
TGATGCTGGTCCAGCAGTGGACGGCCGCTGCACGTGCCCTCCTCCATGGC
AAATCATCGCCCACAACTAACAGGGGCGATCCCAGGGGCACGCGAAGGCG
CAAAGATGGAAATAAAAGCGGGGACGACGAGGCGGCGTATGAGAAGCTGC
AGGCTCTGCTGGAAAGGGCTGAGGAAGTACAGGGTGCAGGTCGGGGTCAA
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