mRNA_S-ischiensis_contig14.3343.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig14.3343.1
Unique NamemRNA_S-ischiensis_contig14.3343.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig14contigS-ischiensis_contig14:2045661..2048119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size421
Cds size396
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig14.3343.1prot_S-ischiensis_contig14.3343.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig14 2045684..2048119 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.9348779-UTR-S-ischiensis_contig14:2045660..20456831622815702.9348779-UTR-S-ischiensis_contig14:2045660..2045683Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 2045661..2045683 +
1695739862.4790626-UTR-S-ischiensis_contig14:2045660..20456831695739862.4790626-UTR-S-ischiensis_contig14:2045660..2045683Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 2045661..2045683 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.9475935-CDS-S-ischiensis_contig14:2045683..20457011622815702.9475935-CDS-S-ischiensis_contig14:2045683..2045701Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2045684..2045701 +
1695739862.4878638-CDS-S-ischiensis_contig14:2045683..20457011695739862.4878638-CDS-S-ischiensis_contig14:2045683..2045701Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2045684..2045701 +
1622815702.9592528-CDS-S-ischiensis_contig14:2047169..20472761622815702.9592528-CDS-S-ischiensis_contig14:2047169..2047276Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2047170..2047276 +
1695739862.4964263-CDS-S-ischiensis_contig14:2047169..20472761695739862.4964263-CDS-S-ischiensis_contig14:2047169..2047276Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2047170..2047276 +
1622815702.969078-CDS-S-ischiensis_contig14:2047848..20481191622815702.969078-CDS-S-ischiensis_contig14:2047848..2048119Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2047849..2048119 +
1695739862.5049272-CDS-S-ischiensis_contig14:2047848..20481191695739862.5049272-CDS-S-ischiensis_contig14:2047848..2048119Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2047849..2048119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig14.3343.1

>prot_S-ischiensis_contig14.3343.1 ID=prot_S-ischiensis_contig14.3343.1|Name=mRNA_S-ischiensis_contig14.3343.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=132bp
MVRCIEELERDLGRTTCALALTLLCKVPARLHRSRLSEAFCRWRELPRGP
PPSTDTSTQTPDGAVQTSSAAHPPPSPGPPLPPPPPPPQHRLPPPPPYAA
CVGAWPHGCSGGGNGGGGGGGGGADTRACITG
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mRNA from alignment at S-ischiensis_contig14:2045661..2048119+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig14.3343.1 ID=mRNA_S-ischiensis_contig14.3343.1|Name=mRNA_S-ischiensis_contig14.3343.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2459bp|location=Sequence derived from alignment at S-ischiensis_contig14:2045661..2048119+ (Schizocladia ischiensis KU_0333)
GGAGGCCCGTGGAGGGCGCCGCGATGGTTCGTTGCATAGAGGTGAGGCCT
GGGCTGGGCTGGAGGCGATCGAATCAGCTGCTTTGGAGCGCCAAGTACTT
GTACGAGTACTCGAGTACATGTAGTACGTGCTTGCTTGGCACATCGAAGT
ATTTTGCATTGTTGACAGGAACAACACAGGGTGAGGTGCGAGCCACGTCG
CTGAAGACCTCAGCAGCGGCCCTTCCTTATAGCTCGCCAGGGGAAATTTG
CCGTAGTACAGTGGTACAGTGGTACTGAACTGCTAAGGAAGGGCCACCGT
TGAGGTCTTCAGTGAGGTGGCCTGCACCCCAGCCCGTGTTTTTCCTCGTT
CTCCTGCTGAGTCATTGGCCCGTTTCCATCCCCGCCCCGCCCCCCTAACA
AGTACAGTGGTACTGAAATGCTAAGGGAGGGCCACTGTTGAGGTCTTTAG
CGACGGCCTGCACCCTGCCCTGTGTTTTTTCCCTCCGTCTCCTGCTGTGT
TGTCATTGGCCCGTTTCCTCCCCACCCCGCTCCCAAGTGGGACCTTGAGA
GCTGTGCCGAGGTGTACTGTACCGTACTGTACCGTACTGTACCGTACCGT
ACTGTACCGTACTAAGCTGTGCTGTGCTGTGCTCGTCTCGACACACCTCA
TAGAGAGCTGTGCTGAGGTGTATTGTACCTTGCTGTATCGTGCTGTGCTG
AGGTGTACTGTACCGTACTGTGCTGAGGTGTACTATATCATGCTGTACCG
TACTGAACTGAGGTGTACTGTACCGTACTGTACCATGCTGTGCTGAGGTG
TACTGTACCATACTCTACCGTACTGTGCTGAGATGTACTGTACCGTACTG
TACCGTACTGTGCTGAGGTGTACTGTACCGTACTGTGCTGTGCCGTGCTT
GTCTCGAGACGCCTTGTTCTCTCTCTACCTCCCCGTCTCCTGCTGTGTTG
TCATTGGCCTACTTTCTCCCTCCCCACCCCCCGCCCCCGAGGAGCAGGAG
CTGGAGAGGGACCTCGGCAGGACCACTTATTTATCGACAGAACTGATCTA
TATATGTATCGATAGTCGATACTCGATAGTTTGCCCACACTAAATCCAAG
TAGTTGGCAACGCCACCCACAAAAGCAGTGGAGCCCGATAACTATCTACT
GATCGATATTCCGTCACTGCCGAGCAGGAGCTCGAGAGGGACCTCAGCAG
GACCACCTGCGCGCTAGCCCTGACGCTCTTGTGCTATCTACTTGGATTTA
GTGTGGGTCAAACTATCGAATATCGACTATCGATAGATATATAGATCATC
ACCCCGCCCCTTTCCTTCTTTATTTTTGTTTTCTTTTGTTCTGCAAGGGG
AAGAAGGGCTTCGATGAGTCCTATTTTGGGACGAGCCTTTTGGCACGGGG
CCTGGAACTCGATGCTTATCTAACACTCAAAATAGATCAGTATTGTGGAA
TTGGTTGATTTGCGTAGCTGTTCCATCACTGGTTTCCTCCCCACCCCGCC
CCTGAGCAGGAGCTCGAGAGGGACCTCGGCAGGACCACCTGCGCGCTGGC
CCTGACGCTCTTGTGCAAGGTGCCGGCACGCCTGCACCGCTCCAGGCTCT
CCGAGGCATTCTGCAGGTGTGTAGTGCGCTGTGCTGTACTCACGAGTCAG
GGACACGCTCAAGTACTCCTTGACGTGATGTGATGTCAACCTACTGGATG
CTAGATCAAACATCAAATCACATCACATCGCACAAGTGTTACAGTGTACA
AATGAACTACGGAACAGTACACTACACTACACTACAGTACGTACCCTATT
CCGGCACGCGCGCGTGTGTGCGTGTGTGTGCGAGGGGTGTGTGCGCGTGC
GTGTGAAACACTTTTGAGTAGACTTCTACAGTAGAGCTCTAAGCTGTGCA
GTACGGTAGTTTTTCCAATCATGAAGATAAACTACGGTAGTTCTGTAGAG
GGCGTCGATGCACTAAGTTATAAACCTACACTCCCAAGCGCTCAAGCCCC
CTTCGCAAGGACTCATTTTCCTCCACGCCATCCGACTCATCAGGGCTGAC
TCAGGAATCCCACCCCTCCCCGCGCACCGGCCACCCCTCGACATGCATGT
GCGTGTGTGTGCGCTCGTTGTTGTGCGTTTACGTTTGTGCGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTACGCACGCCCTCGCAGGTGGAGAGAGCT
GCCGCGAGGACCGCCCCCGTCCACGGACACCTCCACGCAGACGCCTGACG
GGGCAGTGCAAACCTCGTCTGCGGCGCATCCGCCCCCTTCTCCCGGGCCG
CCGCTGCCGCCACCCCCACCCCCACCCCAACACCGGCTTCCTCCTCCTCC
TCCATACGCCGCCTGTGTTGGGGCTTGGCCGCACGGCTGCAGCGGAGGCG
GCAACGGCGGCGGCGGCGGCGGCGGCGGCGGCGCTGACACCCGTGCCTGC
ATCACTGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig14:2045661..2048119+

>mRNA_S-ischiensis_contig14.3343.1 ID=mRNA_S-ischiensis_contig14.3343.1|Name=mRNA_S-ischiensis_contig14.3343.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=792bp|location=Sequence derived from alignment at S-ischiensis_contig14:2045661..2048119+ (Schizocladia ischiensis KU_0333)
ATGGTTCGTTGCATAGAGATGGTTCGTTGCATAGAGGAGCTCGAGAGGGA
CCTCGGCAGGACCACCTGCGCGCTGGCCCTGACGCTCTTGTGCAAGGTGC
CGGCACGCCTGCACCGCTCCAGGCTCTCCGAGGCATTCTGCAGGAGCTCG
AGAGGGACCTCGGCAGGACCACCTGCGCGCTGGCCCTGACGCTCTTGTGC
AAGGTGCCGGCACGCCTGCACCGCTCCAGGCTCTCCGAGGCATTCTGCAG
GTGGAGAGAGCTGCCGCGAGGACCGCCCCCGTCCACGGACACCTCCACGC
AGACGCCTGACGGGGCAGTGCAAACCTCGTCTGCGGCGCATCCGCCCCCT
TCTCCCGGGCCGCCGCTGCCGCCACCCCCACCCCCACCCCAACACCGGCT
TCCTCCTCCTCCTCCATACGCCGCCTGTGTTGGGGCTTGGCCGCACGGCT
GCAGCGGAGGCGGCAACGGCGGCGGCGGCGGCGGCGGCGGCGGCGCTGAC
ACCCGTGCCTGCATCACTGGCGTGGAGAGAGCTGCCGCGAGGACCGCCCC
CGTCCACGGACACCTCCACGCAGACGCCTGACGGGGCAGTGCAAACCTCG
TCTGCGGCGCATCCGCCCCCTTCTCCCGGGCCGCCGCTGCCGCCACCCCC
ACCCCCACCCCAACACCGGCTTCCTCCTCCTCCTCCATACGCCGCCTGTG
TTGGGGCTTGGCCGCACGGCTGCAGCGGAGGCGGCAACGGCGGCGGCGGC
GGCGGCGGCGGCGGCGCTGACACCCGTGCCTGCATCACTGGC
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