mRNA_S-ischiensis_contig14.3195.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig14.3195.1
Unique NamemRNA_S-ischiensis_contig14.3195.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig14contigS-ischiensis_contig14:372176..376478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size700
Cds size699
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig14.3195.1prot_S-ischiensis_contig14.3195.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig14 372176..376478 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.6795824-CDS-S-ischiensis_contig14:372175..3722261622815700.6795824-CDS-S-ischiensis_contig14:372175..372226Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 372176..372226 +
1695739861.2741075-CDS-S-ischiensis_contig14:372175..3722261695739861.2741075-CDS-S-ischiensis_contig14:372175..372226Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 372176..372226 +
1622815700.6924686-CDS-S-ischiensis_contig14:372590..3726821622815700.6924686-CDS-S-ischiensis_contig14:372590..372682Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 372591..372682 +
1695739861.2852452-CDS-S-ischiensis_contig14:372590..3726821695739861.2852452-CDS-S-ischiensis_contig14:372590..372682Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 372591..372682 +
1622815700.7026997-CDS-S-ischiensis_contig14:374397..3745741622815700.7026997-CDS-S-ischiensis_contig14:374397..374574Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 374398..374574 +
1695739861.294052-CDS-S-ischiensis_contig14:374397..3745741695739861.294052-CDS-S-ischiensis_contig14:374397..374574Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 374398..374574 +
1622815700.714991-CDS-S-ischiensis_contig14:375622..3758091622815700.714991-CDS-S-ischiensis_contig14:375622..375809Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 375623..375809 +
1695739861.303532-CDS-S-ischiensis_contig14:375622..3758091695739861.303532-CDS-S-ischiensis_contig14:375622..375809Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 375623..375809 +
1622815700.7248824-CDS-S-ischiensis_contig14:376286..3764781622815700.7248824-CDS-S-ischiensis_contig14:376286..376478Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 376287..376478 +
1695739861.3133488-CDS-S-ischiensis_contig14:376286..3764781695739861.3133488-CDS-S-ischiensis_contig14:376286..376478Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 376287..376478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig14.3195.1

>prot_S-ischiensis_contig14.3195.1 ID=prot_S-ischiensis_contig14.3195.1|Name=mRNA_S-ischiensis_contig14.3195.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=233bp
RRARHALELEKQLMENKAHKEEEERARKVLEAKEEQRLERERQEIQRRYE
EDEKAAKAAQQEAIRREHDDALGLALKKKEEEARRREEEDRAEDDRVRRE
QEELRLKHEKELAEEQRVRAHHTPRTGHMAGPVTTPSKAVGSPGSGGVGS
LRGGGSPSRSRVRSPGSKGPASGRSVKWAAPGPAGEQHPGHPEGRHDSST
TPTNTGKTPRTPPSSLRSSRGRRAEGAGEEEVA
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mRNA from alignment at S-ischiensis_contig14:372176..376478+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig14.3195.1 ID=mRNA_S-ischiensis_contig14.3195.1|Name=mRNA_S-ischiensis_contig14.3195.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4303bp|location=Sequence derived from alignment at S-ischiensis_contig14:372176..376478+ (Schizocladia ischiensis KU_0333)
AGGAGGGCGAGGCACGCACTGGAACTGGAGAAGCAGCTCATGGAGAACAA
GGTGTGCTACCGTTAGCGGACGACGGTACATTGTAGCGGTTTCTACACTA
GCTGCTTGATGCGTAGAAGACTAGGTACTTGACCGCTAAAGGAGGGCGAC
GGTGTTCTACGCTAGCTACTTGATGACGCAGAGGACGACGGTGCACTAGC
TCTTGACCGTTGGAGGAGAACGGCGGTGTTGTACACTAAGTACTTGACCC
TCGGAGGAGGACGATGGTATTCTACACGCTAAGTCTTCTCTCCACACATC
AACTCTTTCTCTCCTCACGTTAGCGCTTCTCTGCTCACAAAAATGCTGGC
GCGCCCTCGCAAACGACGCGATTTTTTCCGCAACCTCGGCAACAATCTCT
GACCAATCGCGGCAGGCGCACAAGGAGGAAGAGGAACGCGCTCGTAAGGT
GCTGGAGGCCAAGGAAGAGCAGCGGCTGGAGAGAGAGAGGCAGGAGATAC
AGAGGAGGTGAGAGAGAGAGAGGAGGCAGGAGACACAGAGGAGGTACAGT
AGGCTGGAGAGAGAGAGAGGCAGGAGACACAGAGGAGCGGTGTGTGTGTG
TGTGTGAGAGAGAGGGAGAGGTAGGAAATTCAGAGCTGAGAGAGAGAGAG
GCAGGAGATACAGCGGAGGTGAGCTGGAGAGAGAGAGGCGGGAAATACGG
AGGAGGTGAGCTGGGGAGGGAGAGGCAGGAAATACAGAGGACGCGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTAGC
AGATACAGAGGAGGTGAGCGGCAGGAAATACAGAGGAGTGTGTGTGTGTG
AGAGAGGGAGAGGCAGGAAAGATACCGAGGAGGTGAGAGAGAGGCAGGAA
ATACAGAGGAGGTGAGAGAGAGAGCAGGAGATACAGAGGACACGAGCTGG
AGATAGAGAGGCAGGAAATACAGAGGAGGTGAGCTGCAGAGAGAGGTGGG
CAGGAAATACAGAGGAGGTAGGTGACCGCTTTCGCAACACGTGCCGAACG
GCGCAGTTTAAGAGAGGCAGGAGATACAGAGGAGGTGCCCGCTTTCTAGC
ACACTGAGAGAGAGAGGGGCAGGAAATACAGAGGAGGTGACCGTTTTCGT
AACACGTCGAACGGCGCAGTTTATGGGGGATACTGGAGAGAGAGAGAGAG
GCAGGGAACAAAGTGGAGGTGACCGCTTCCGTAGCATGTCGAACATCGCA
ACTTACAGGGGAATATTATGGCGCTGTTGTGTTGCTTCTACTCGGAAGTA
TACTTCGTATCTCTATACATATATCCTCCAGAATCAAGTACTGTACATGT
GCATGTGTGCGAGTACTTGTGCTGGACAGGCTGTCATTGTTACACCATGG
TGTTTCCCCGCGTCCTGTACATGCTGGACTTTGTGTGATGTGATGTGATA
GGATCACTGTACGCCCCTTCACGTGCTGCGCTGCGCTGTACTGTACCGTA
CTGTGCTGCTGTACGGCGAGTCGCGCAGGTACGAGGAGGGCGAGAGTAGG
ACCACTGTACCCCCCTTCACGTGCTGCACTGTACTGTACTGTACTGTGCT
GCTGTACGGTTCGTCACACAGGCAGTACATAGGGCCACTGTACACCCCTT
TACGTGTTGTACTGCACTGTACTGTACTGTGCCGTGCTGTACTGCACTGC
ACTGCACTGTACTGCACTGTACTGTGCCGCTGTACGGAGTGTCGCACAGG
TACGAGGAGGACGAGACTGTACACGCATGCAGTACATAGGAGCACTGTAC
GCCCCTTCACGTCCTGCGCTGTACTGTACTGCACTGTACTGTACTGCACT
GTACTGTGCTGCACTGTACTGTACTGTACTGCACTGTACTGTACCGCACT
GTACTGGACTGTACTGCACTCCACAGTACTGTACTGCACAGTACTGTACG
GCACTGTACTGCACTGGACAGTACACACAGGCAGTACATACTACTAGTCA
TACTCAAGTAGGACCACTGTACGCACCTCGCCCCGTGTTGTTTCTTAAAT
TACTGTACTGTGCCTCTGTACGGTGTGTCTTGCAGGTACGAGGAGGATGA
GACTGTACACGCCGGCAGTACATAGGACCACCGTACTGTACTGTACTGTA
CTGTGATGTACGCCCCTTCACGTGCTGCACTGTACCGGATTGTGATCTAC
TGTACTGTGCCGCTGGATACAGGTACGAGGAGGACGAGAAGGCGGCCAAG
GCGGCTCAGCAGGAGGCCATCCGGCGGGAGCACGACGACGCACTGGGGCT
GGCCCTGAAGAAGAAGGAGGAGGAGGCCCGCCGGAGGGAGGAGGAGGACA
GGGCAGAGGACGACCGCGTGCGGCGGGAGCAAGAGGAGCTCAGACTGAAG
TGAGCACACTACCTAGCTTTTTGTTTTTCTACCTCAACTTTTGCCATTCT
TCTTTTCGTGGTTTGGCTGTTTTGATTTTCAGTTTACAAGGCATCAACTT
GTACGTTTCCTATGAGGTATTTTTTCTAGCATGGAGCTGTTCAGGAAAAT
TGGATTACGCCATAGGTGAGAGCTCAGACTGAAGTGAGCACACTAGTGTA
GTGTTGTGGACTGGTGCCGGTTTTTACCGGTCGGTACCAGTTAACTGGTT
CTACCTGTGAACCGACCGGTGGCCAATCGTGTGCCCGGAGCGTAAAAACC
GGTCGGTATCAGTTAACCGGTTTAAGTGGTTACCGTAATCGTCGGAGAGG
TGTTGCCCGCATGGGACAGTTTTCGGGCGAGTATTCTTAGGCAGGAAGAT
CCTGAATTGTCCCGAAAACTCTCCGAAATGTTCCCCCAGGTCCTGAGGGA
GATTTCCCGAGTTTCCCCGCGCGAATCTGACCGGTGTTCGGCAAGAAACT
TTCTCCCGAAAATTGGCATGGGGGGGCAAGATCTCTCCGATGATTACGGT
AACCGACCGGTGGCGGAGCCGGAGCGGGTGACGTGACCTAAGCTATTCGT
TGATTTTGGCGATACGCTAGCCGTTGCCAGCCACGGGTTAGAACCGACCG
GTCACACGACCGGGTTACAGTTGAACTGGTAGGCCTTGCCAGTTCACAAC
TCTAGCGTGCTGAAAACATGGGCCCAGTTTTGGCGGTTCTTCATTTTGAA
TACCCAGTCGTTGTGGTCGTCGTCGTCTTCGCCGCCGCCGTCACTTTCAA
CAACTTTGCCCCTCCTGGCCGCCCGCCCAGGGTTGGCACTTAGAGGCTAA
TGAGGGCCTAGTTAGCCTGCATTTTAGGTCTAATTCCCCCTGATTGCCTC
TGTTTAAGGACCTAGAGCTACTCGAGTACCGGCACAGCAAAAGGGCACCA
CTTACTAGGGGTTAAGTGTCAACCCCGTGCCCGCCCAACCACCGGGCCCG
AATGTTCGGCCGCGAAAATGCACCCCCCCCCACCCCCCCCCCGGCAGGCA
CGAAAAGGAACTGGCGGAGGAGCAGCGGGTGCGCGCGCACCACACTCCCC
GCACCGGGCACATGGCGGGGCCAGTGACTACGCCTTCCAAGGCTGTGGGC
TCGCCTGGTAGCGGCGGCGTCGGGAGCTTGCGGGGCGGTGGCAGCCCCAG
CCGGTCTCGGGTTCGGAGTCCGGGATCGAAGGGGGTGAGTCTGCAACTTG
CGTTGGGTTTGGCCATGTACTTCGAAGTACAGTAGTGCATGCAGTTGGTC
GATTGCTATAGCTTTACCGAGTCGATTGCACTTGATTTGTGACTTGATGT
GTTGTGATTTTTAGTCTGATGTACGGTACCCTTGTTGTCACCATTGTCAT
CAATATCATCATCATCATCATCATCGTTCTCACCGCCGCCGCCACCGCCG
CCGCCGCCGCCACCACCACCGCCACCACCACCTCGACCACCACCACCACC
ACCACCACCACCACCACACCTCCACCACCGCCATCGCCACCACCGCCATC
GCCACCACCACAACCACAACCACCACCACCACCACCACCACCTCCACCAC
CGCCGTCACCTACCACCACCACCACCACCACCACCACCACCACCACCACC
ACCACCACCACACCACCACCACCTCCACCGCCGCCACCACCACCACCACC
GCCACCACCAGCCCGCGAGCGGCCGGTCAGTCAAGTGGGCGGCTCCGGGC
CCCGCCGGGGAACAACACCCCGGACACCCCGAGGGGCGACACGACTCCTC
CACCACGCCAACCAACACGGGCAAAACCCCTAGAACCCCTCCCTCTTCCC
TGCGCTCGTCGCGCGGAAGGCGTGCGGAAGGGGCTGGGGAGGAGGAGGTG
GCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig14:372176..376478+

>mRNA_S-ischiensis_contig14.3195.1 ID=mRNA_S-ischiensis_contig14.3195.1|Name=mRNA_S-ischiensis_contig14.3195.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1398bp|location=Sequence derived from alignment at S-ischiensis_contig14:372176..376478+ (Schizocladia ischiensis KU_0333)
AGGAGGGCGAGGCACGCACTGGAACTGGAGAAGCAGCTCATGGAGAACAA
GAGGAGGGCGAGGCACGCACTGGAACTGGAGAAGCAGCTCATGGAGAACA
AGGCGCACAAGGAGGAAGAGGAACGCGCTCGTAAGGTGCTGGAGGCCAAG
GAAGAGCAGCGGCTGGAGAGAGAGAGGCAGGAGATACAGAGGAGGCGCAC
AAGGAGGAAGAGGAACGCGCTCGTAAGGTGCTGGAGGCCAAGGAAGAGCA
GCGGCTGGAGAGAGAGAGGCAGGAGATACAGAGGAGGTACGAGGAGGACG
AGAAGGCGGCCAAGGCGGCTCAGCAGGAGGCCATCCGGCGGGAGCACGAC
GACGCACTGGGGCTGGCCCTGAAGAAGAAGGAGGAGGAGGCCCGCCGGAG
GGAGGAGGAGGACAGGGCAGAGGACGACCGCGTGCGGCGGGAGCAAGAGG
AGCTCAGACTGAAGTACGAGGAGGACGAGAAGGCGGCCAAGGCGGCTCAG
CAGGAGGCCATCCGGCGGGAGCACGACGACGCACTGGGGCTGGCCCTGAA
GAAGAAGGAGGAGGAGGCCCGCCGGAGGGAGGAGGAGGACAGGGCAGAGG
ACGACCGCGTGCGGCGGGAGCAAGAGGAGCTCAGACTGAAGCACGAAAAG
GAACTGGCGGAGGAGCAGCGGGTGCGCGCGCACCACACTCCCCGCACCGG
GCACATGGCGGGGCCAGTGACTACGCCTTCCAAGGCTGTGGGCTCGCCTG
GTAGCGGCGGCGTCGGGAGCTTGCGGGGCGGTGGCAGCCCCAGCCGGTCT
CGGGTTCGGAGTCCGGGATCGAAGGGGGCACGAAAAGGAACTGGCGGAGG
AGCAGCGGGTGCGCGCGCACCACACTCCCCGCACCGGGCACATGGCGGGG
CCAGTGACTACGCCTTCCAAGGCTGTGGGCTCGCCTGGTAGCGGCGGCGT
CGGGAGCTTGCGGGGCGGTGGCAGCCCCAGCCGGTCTCGGGTTCGGAGTC
CGGGATCGAAGGGGCCCGCGAGCGGCCGGTCAGTCAAGTGGGCGGCTCCG
GGCCCCGCCGGGGAACAACACCCCGGACACCCCGAGGGGCGACACGACTC
CTCCACCACGCCAACCAACACGGGCAAAACCCCTAGAACCCCTCCCTCTT
CCCTGCGCTCGTCGCGCGGAAGGCGTGCGGAAGGGGCTGGGGAGGAGGAG
GTGGCGCCCGCGAGCGGCCGGTCAGTCAAGTGGGCGGCTCCGGGCCCCGC
CGGGGAACAACACCCCGGACACCCCGAGGGGCGACACGACTCCTCCACCA
CGCCAACCAACACGGGCAAAACCCCTAGAACCCCTCCCTCTTCCCTGCGC
TCGTCGCGCGGAAGGCGTGCGGAAGGGGCTGGGGAGGAGGAGGTGGCG
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