mRNA_S-ischiensis_contig13.3144.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig13.3144.1
Unique NamemRNA_S-ischiensis_contig13.3144.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig13.3144.1 vs. uniprot
Match: D8LE95_ECTSI (Tyrosyl-DNA phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE95_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 4.400e-14
Identity = 55/141 (39.01%), Postives = 80/141 (56.74%), Query Frame = 2 
Query:   38 VAWFLLTSANMSGAAWGLLEKKGKGDQEQLFSKSYELGVIFLPSRI---GRRCPPGHSFA----FSCDPTGP-LTTRYPLTYGGVPREEMEGVGIPLDLLPMPYHLPGPSYTFPQ-----DRPWVAPREEDGVGAEDQGQA 421
            VAWFLLTS+N+S +AWG L K        L  +S+E+GV+FLPS +    +    G++ A    F+C P    LT R+PL+ G    +   G G+PL LLP+PY LP P Y F +     +RPWV  ++++    +  G+A
Sbjct:  467 VAWFLLTSSNLSRSAWGYLNKAST----DLTLRSFEMGVMFLPSLLRSPSQDSDDGNAAAKASGFTCTPGEMGLTQRFPLSLG---YDCEAGKGLPLSLLPLPYVLPAPRYDFDKSQDANERPWVRDQDQNPSSLDRNGEA 600
[Close]
BLAST of mRNA_S-ischiensis_contig13.3144.1 vs. uniprot
Match: A0A2I4HQE3_JUGRE (tyrosyl-DNA phosphodiesterase 1 isoform X1 n=4 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4HQE3_JUGRE)

HSP 1 Score: 80.5 bits (197), Expect = 1.140e-13
Identity = 54/126 (42.86%), Postives = 65/126 (51.59%), Query Frame = 2 
Query:   38 VAWFLLTSANMSGAAWGLLEKKGKGDQEQLFSKSYELGVIFLPSRIGRRCPPGHSFAFSCDPTG---------------PLTTRYPLTYGGVPREEMEGVGIPLDLLPMPYHLPGPSYTFPQDRPW 370
            +AWFLLTSAN+S AAWG L+K    +  QL  +SYELGV+FLPS   R     H   FSC   G               P TT+  LT+ G    +     IPL   P+PY LP   YT P+D PW
Sbjct:  551 LAWFLLTSANLSKAAWGALQK----NNTQLMIRSYELGVLFLPSSTER-----HGSEFSCTSNGDVMEDKSRLLENSEVPRTTQVTLTWQGSRNSDPTSEVIPL---PIPYELPPQPYT-PEDVPW 663
[Close]
BLAST of mRNA_S-ischiensis_contig13.3144.1 vs. uniprot
Match: A0A8B8M002_ABRPR (tyrosyl-DNA phosphodiesterase 1 isoform X1 n=3 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8M002_ABRPR)

HSP 1 Score: 77.0 bits (188), Expect = 1.690e-12
Identity = 55/133 (41.35%), Postives = 70/133 (52.63%), Query Frame = 2 
Query:   32 EGVAWFLLTSANMSGAAWGLLEKKGKGDQEQLFSKSYELGVIFLPSRIGRRCPPGHSFAFSCDP------------TGPLTTRYPLTYGGVPREEMEG---VGIPLDLLPMPYHLPGPSYTFPQDRPWVAPRE 385
            + +AWFLLTSAN+S AAWG L+K    +  QL  +S+ELGV+FLPS   R     H FAFSC              T  +     +T  G+ RE+M     V IPL   P+PY LP   Y+  QD PW   R+
Sbjct:  513 QNLAWFLLTSANLSKAAWGALQK----NNTQLMIRSFELGVLFLPSLFKR-----HGFAFSCTSNVVSKDKCSSKETSEMKKTKLVTLPGLTREKMHSSSEVDIPL---PVPYELPPLPYSS-QDVPWSWDRQ 632
[Close]
BLAST of mRNA_S-ischiensis_contig13.3144.1 vs. uniprot
Match: A0A7I8KB26_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KB26_SPIIN)

HSP 1 Score: 75.9 bits (185), Expect = 4.260e-12
Identity = 46/111 (41.44%), Postives = 64/111 (57.66%), Query Frame = 2 
Query:   38 VAWFLLTSANMSGAAWGLLEKKGKGDQEQLFSKSYELGVIFLPSRIGRRCPPGHSFAFSCDPTGPLTTRYPLTYGGVPREEMEGVGIPLDLLPMPYHLPGPSYTFPQDRPW 370
            +AWFLLTSAN+S AAWG L+K    +  QLF +SYELGV+FLPS++      GH+        G  +    +T GG+   + +     + + P+PY LP   YT P+D PW
Sbjct:  556 LAWFLLTSANLSKAAWGALQK----NNSQLFIRSYELGVLFLPSKLQ-----GHALPNFSTLVGQCSNTRLVTLGGLGTGQADSSTNVISI-PVPYELPPQPYT-PEDVPW 655
[Close]
BLAST of mRNA_S-ischiensis_contig13.3144.1 vs. uniprot
Match: A0A843WMX0_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843WMX0_COLES)

HSP 1 Score: 75.5 bits (184), Expect = 5.730e-12
Identity = 52/122 (42.62%), Postives = 67/122 (54.92%), Query Frame = 2 
Query:   38 VAWFLLTSANMSGAAWGLLEKKGKGDQEQLFSKSYELGVIFLPSRIGRRCPPGHSFAFSCDPTGPLTTRYPLTYGGVPREEMEGVGI------PLDL-----LPMPYHLPGPSYTFPQDRPW 370
            +AWFLLTSAN+S AAWG L+K    +  QLF +SYELGV+FLP ++  R P     +FSC  +G L    P       R+E +   +        DL     LP+PY LP P YT  +D PW
Sbjct:  537 LAWFLLTSANLSKAAWGALQK----NNSQLFIRSYELGVLFLPYKLQGRAP-----SFSCTDSGHLA-EVPSKNHDEERKETKFATLCWQENKTTDLCNVIRLPVPYELPPPPYTS-EDVPW 647
[Close]
BLAST of mRNA_S-ischiensis_contig13.3144.1 vs. uniprot
Match: A0A452HMM0_9SAUR (Tyrosyl-DNA phosphodiesterase 1 n=22 Tax=Durocryptodira TaxID=1579337 RepID=A0A452HMM0_9SAUR)

HSP 1 Score: 73.6 bits (179), Expect = 2.500e-11
Identity = 48/116 (41.38%), Postives = 61/116 (52.59%), Query Frame = 2 
Query:   26 ELEGVAWFLLTSANMSGAAWGLLEKKGKGDQEQLFSKSYELGVIFLPSRIGRRCPPGHSFAFSCDPTGPLTTRYPLTYGGVPREEMEGVGIPLDLLPMPYHLPGPSYTFPQDRPWV 373
            + + +AWFL+TSAN+S AAWG LEK G     QL  +SYELGV+FLPS            AF  D TG         Y  V ++   G   P+   P+PY LP   Y   +DRPW+
Sbjct:  503 DFQKIAWFLVTSANLSKAAWGALEKNGT----QLMIRSYELGVLFLPS------------AFGLD-TG---------YFHVKKKMFSGSNEPVTSFPVPYDLPPEQYGS-KDRPWI 591
[Close]
BLAST of mRNA_S-ischiensis_contig13.3144.1 vs. uniprot
Match: A0A2I0WR57_9ASPA (Tyrosyl-DNA phosphodiesterase 1 n=4 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WR57_9ASPA)

HSP 1 Score: 73.6 bits (179), Expect = 2.590e-11
Identity = 49/122 (40.16%), Postives = 64/122 (52.46%), Query Frame = 2 
Query:   32 EGVAWFLLTSANMSGAAWGLLEKKGKGDQEQLFSKSYELGVIFLPSRIGRRCPPGHSFAFSCDPTGPL---------TTRYPLTYGGVPREEMEGVGIPLDLLPMPYHLPGPSYTFPQDRPW 370
            + +AWFLLTSAN+S AAWG L+K    +  QL  +SYELGV+FLPS +      G+   FSC   G +         T    L + G P    E +      LP+PY LP   Y+ P+D PW
Sbjct:  556 QNLAWFLLTSANLSKAAWGALQK----NNSQLMIRSYELGVLFLPSVMK-----GNLSQFSCTGNGDMKQMSTKNGKTKLVTLCWNGEPDSSSEII----IRLPVPYQLPAQPYS-PEDMPW 663
[Close]
BLAST of mRNA_S-ischiensis_contig13.3144.1 vs. uniprot
Match: A0A7N0UD36_KALFE (FHA_2 domain-containing protein n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0UD36_KALFE)

HSP 1 Score: 73.6 bits (179), Expect = 2.600e-11
Identity = 52/141 (36.88%), Postives = 72/141 (51.06%), Query Frame = 2 
Query:   38 VAWFLLTSANMSGAAWGLLEKKGKGDQEQLF---------------SKSYELGVIFLPSRIGRRCPPGHSFAFSC--------------DPTGPLTTRY-PLTYGGVPREEMEGVGIPLDLLPMPYHLPGPSYTFPQDRPW 370
            +AWFLLTSAN+S AAWG L+K       + +               SKS++LGV+FLPSRI  +    H  AFSC              + TGP++T+   L++ GV  E+     +    LP+PY LP   Y+ P+D PW
Sbjct:  527 LAWFLLTSANLSKAAWGALQKSNSQLMIRSYEINAQLAHMCLTIFSSKSFQLGVLFLPSRINSQ---SHGSAFSCTAVGTSSKESPRSVEATGPVSTKLVTLSWPGVENEDPSSEEV--IRLPVPYELPPQPYS-PEDVPW 661
[Close]
BLAST of mRNA_S-ischiensis_contig13.3144.1 vs. uniprot
Match: UPI000CE1DD48 (tyrosyl-DNA phosphodiesterase 1-like n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE1DD48)

HSP 1 Score: 68.6 bits (166), Expect = 4.200e-11
Identity = 48/126 (38.10%), Postives = 61/126 (48.41%), Query Frame = 2 
Query:   38 VAWFLLTSANMSGAAWGLLEKKGKGDQEQLFSKSYELGVIFLPSRIGRRCPPGHSFAFSCDPTGPL---------------TTRYPLTYGGVPREEMEGVGIPLDLLPMPYHLPGPSYTFPQDRPW 370
            +AW LLTS+N+S AAWG L+K    +  QL  +SYELGV+FLPS   R     +   FSC   G +               T    LT+ G    +     IPL   P+PY LP   YT  +D PW
Sbjct:   15 LAWLLLTSSNLSKAAWGALQK----NNSQLMIRSYELGVLFLPSSFER-----YGSGFSCTSNGDIKEDKCRSLENSEVRRTKLVTLTWQGSRNSDSSSDVIPL---PVPYELPPQPYTS-EDVPW 127
[Close]
BLAST of mRNA_S-ischiensis_contig13.3144.1 vs. uniprot
Match: K7G564_PELSI (Uncharacterized protein n=12 Tax=Cryptodira TaxID=8464 RepID=K7G564_PELSI)

HSP 1 Score: 72.8 bits (177), Expect = 4.560e-11
Identity = 48/116 (41.38%), Postives = 60/116 (51.72%), Query Frame = 2 
Query:   26 ELEGVAWFLLTSANMSGAAWGLLEKKGKGDQEQLFSKSYELGVIFLPSRIGRRCPPGHSFAFSCDPTGPLTTRYPLTYGGVPREEMEGVGIPLDLLPMPYHLPGPSYTFPQDRPWV 373
            + + +AWFL+TSAN+S AAWG LEK G     QL  +SYELGV+FLPS            AF  D TG         Y  V  +   G   P+   P+PY LP   Y   +DRPW+
Sbjct:  503 DFQKIAWFLVTSANLSKAAWGALEKNGT----QLMIRSYELGVLFLPS------------AFGLD-TG---------YFHVKTKMFSGSNEPMTSFPVPYDLPPEQYGS-KDRPWI 591
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.3144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE95_ECTSI4.400e-1439.01Tyrosyl-DNA phosphodiesterase n=2 Tax=Ectocarpus T... [more]
A0A2I4HQE3_JUGRE1.140e-1342.86tyrosyl-DNA phosphodiesterase 1 isoform X1 n=4 Tax... [more]
A0A8B8M002_ABRPR1.690e-1241.35tyrosyl-DNA phosphodiesterase 1 isoform X1 n=3 Tax... [more]
A0A7I8KB26_SPIIN4.260e-1241.44Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
A0A843WMX0_COLES5.730e-1242.62Uncharacterized protein n=1 Tax=Colocasia esculent... [more]
A0A452HMM0_9SAUR2.500e-1141.38Tyrosyl-DNA phosphodiesterase 1 n=22 Tax=Durocrypt... [more]
A0A2I0WR57_9ASPA2.590e-1140.16Tyrosyl-DNA phosphodiesterase 1 n=4 Tax=Dendrobium... [more]
A0A7N0UD36_KALFE2.600e-1136.88FHA_2 domain-containing protein n=2 Tax=Kalanchoe ... [more]
UPI000CE1DD484.200e-1138.10tyrosyl-DNA phosphodiesterase 1-like n=1 Tax=Querc... [more]
K7G564_PELSI4.560e-1141.38Uncharacterized protein n=12 Tax=Cryptodira TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig13contigS-ischiensis_contig13:3051932..3054480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue4.8e-08
Seed eggNOG ortholog2880.D8LE95
Preferred nameTDBP1
KEGG koko:K10862
EggNOG free text desc.3'-tyrosyl-DNA phosphodiesterase activity
EggNOG OGsKOG2031@1,KOG2031@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTyrosyl-DNA phosphodiesterase I
Ec32 orthologEc-27_000020.1
Exons3
Model size738
Cds size516
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig13.3144.1prot_S-ischiensis_contig13.3144.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig13 3052087..3054413 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815697.939018-UTR-S-ischiensis_contig13:3051931..30520861622815697.939018-UTR-S-ischiensis_contig13:3051931..3052086Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 3051932..3052086 -
1695739859.3636057-UTR-S-ischiensis_contig13:3051931..30520861695739859.3636057-UTR-S-ischiensis_contig13:3051931..3052086Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 3051932..3052086 -
1622815697.9942439-UTR-S-ischiensis_contig13:3054413..30544801622815697.9942439-UTR-S-ischiensis_contig13:3054413..3054480Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 3054414..3054480 -
1695739859.414678-UTR-S-ischiensis_contig13:3054413..30544801695739859.414678-UTR-S-ischiensis_contig13:3054413..3054480Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 3054414..3054480 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815697.9535031-CDS-S-ischiensis_contig13:3052086..30524261622815697.9535031-CDS-S-ischiensis_contig13:3052086..3052426Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 3052087..3052426 -
1695739859.3776553-CDS-S-ischiensis_contig13:3052086..30524261695739859.3776553-CDS-S-ischiensis_contig13:3052086..3052426Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 3052087..3052426 -
1622815697.965216-CDS-S-ischiensis_contig13:3052884..30530241622815697.965216-CDS-S-ischiensis_contig13:3052884..3053024Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 3052885..3053024 -
1695739859.392902-CDS-S-ischiensis_contig13:3052884..30530241695739859.392902-CDS-S-ischiensis_contig13:3052884..3053024Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 3052885..3053024 -
1622815697.9769971-CDS-S-ischiensis_contig13:3054377..30544131622815697.9769971-CDS-S-ischiensis_contig13:3054377..3054413Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 3054378..3054413 -
1695739859.4047813-CDS-S-ischiensis_contig13:3054377..30544131695739859.4047813-CDS-S-ischiensis_contig13:3054377..3054413Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 3054378..3054413 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig13.3144.1

>prot_S-ischiensis_contig13.3144.1 ID=prot_S-ischiensis_contig13.3144.1|Name=mRNA_S-ischiensis_contig13.3144.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=172bp
MSGAAWGLLEKKGKGDQEQLFSKSYELGVIFLPSRIGRRCPPGHSFAFSC
DPTGPLTTRYPLTYGGVPREEMEGVGIPLDLLPMPYHLPGPSYTFPQDRP
WVAPREEDGVGAEDQGQAQDPGPWGRGQEWQEVKQGWECHLPDRFGGCIP
CPPDWAGENGQGSVPVQCPIS*
back to top

mRNA from alignment at S-ischiensis_contig13:3051932..3054480-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig13.3144.1 ID=mRNA_S-ischiensis_contig13.3144.1|Name=mRNA_S-ischiensis_contig13.3144.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2549bp|location=Sequence derived from alignment at S-ischiensis_contig13:3051932..3054480- (Schizocladia ischiensis KU_0333)
AGGCGTGGAATGTTCAGAGGAGGGAGAGCTGGAAGGAGTAGCGTGGTTCC
TGCTCACCTCAGCCAACATGAGCGGCGCCGCCTGGGGCTTGTTGGAGAAG
AAGGTGGGGGTGATTCAGATAACTTTGTTTGATTTTTGTGACCTGCGGGT
GAAAAGAAGGGCTTCTGGTGAGGCCCCCACCTCAGGTTGTTGGGACGAGG
CCCGGAACTCGCATGCCATGACAATGATGAAGAAATTCTAGCGAGGTACA
ATCGCACGTGTGTGAGATTACGTGTTCTCGTACTAGTGGTTATCACATTT
AAGAATGGAGTGTTCTCGTGTTAGTGGCGATCACATTAAAGAAGGTGGGG
ATTGTTGGGGAAGAGGGTGGCTCCTACCGGTAAGTACAAGAATAAGTACA
GTATTGGCGGGATAGTAATACAGTAGTTCATGACGACACAGGGTGAGATG
CAGGCCACGTCGCTAAAGACCTCAACAGTGGCCCTTCCATATGCGAGTAG
CTCGCCAGGGGAAGTTTGTTTGGGGAAGGGGAGAAAAGGAGGAGGGGGGG
AGAGGGGGGGAGGAAGAGGAGGAGGAGAAGGAGGAGGAAGGGGGGGAGGG
GGGAGGAAGTAGTTCATGACAGCACAGGGTGAGATGCAAGCCACGTCACT
AGATCCTTCAACAATGGCCCTTCCTTTTCAGGGTGCTGTGTGTTGTATTT
TTTACTTCATGTAGTACTTCGTACTTAACCGGAACAACACTGCTTGTGGC
TTTATGATAGCAAAGCCTCTAATCCTACAAGTACACATCCTACCGAGTAC
ATTGCATTGCGACAGTATTTGTTCACTCTACCTCTGCTATAGTCCAGCAT
GGAGTATACCGAGCCGATGGTCGGTGGCATGGACAGGACATAACAGCCCT
GTCTGTCCGACGTGAGTACCGTATATGGCGGGTGATACAAAGTAGAGCTC
TACATCACCAGACGTGCTGTATTTTGCAAGAAGATAAACAAGCGAGTGGG
AAAGAACAGGTGTCGCTACTTACTCGGGTTCAGGGCCCCACCCCCGGAAG
CCCTTCCTTCACTCGCAGGGCATACAGAGCAGAAAATAAATGAACAGGAA
GGGGGAGAGCGGGAGGGAAAGAATAACAGTGGAGGAGGGGTCTCTTGTGC
CACCAAACGGGACATGATGCTTCACACTACCACCCTTGCTAACCTACTGT
ACTCTACACTACTGTACTCCTCAATCCTCCCCCTCCCCTTCCCCACCCCC
CACCCCCCTCCCCTGGCGAGCTAAGGAGGGGCCTCTGGTGACATCTTTAA
TGGCGTGGCCTGCACCTACAGAAGCATAGCCCTGTGTTGTTATAATCCTG
TCAAAGCTGCACCTCATCGCCTATTGTACTGTACGCTACCATATGTACGC
TAGAATTACGCACTGTCACTACGTACTGTACTCGCCTACTGTACAATTTG
CGGCAGGGCAAGGGGGACCAGGAGCAGCTTTTCAGCAAGTCGTACGAGCT
GGGCGTGATCTTCCTGCCCAGCCGCATTGGCAGGCGTTGCCCGCCCGGCC
ACTCCTTCGCGTTCAGCTGCGACCCCACGGGACCCCTGACCACGAGGTAA
CGCGAAGTACTTCGAAGTACTTGAAAGTGCTTGTTTTAATGTACTTCGTA
CAGTGAGGTGAAGCAAGGTACTTGAAAGTGCTTGGTTTACTTGTACACGA
AGGTGAAGTACTTATGGCACAACCCGGGGCCCGCAACTCCCCGCACGTCT
CCACCTAAAGATCAAACTTTTCAACCAACAACTGCGTGGATTGATTTACG
TTCGAGTAACTTAACGTTCGAGTACACTTTTCCATCGATGTAATGCCACT
CCTGACCAGTGGTGGATATCTAAGCAAGTTAACCTACTGTATTTATTGAC
TGTGCTGGTGCATATATCTATCGATAGTCGATACGATAGTTTGACCCACA
CCAAATCCAAGCACGAAGTAGTTGGTAACGCCACCCACAAAATCAGTCAG
CCCAATAACTGTCTACAATACTGATCGCTATTCCATCACTGCTCCTGACG
ACAGGTACCCCCTCACCTACGGCGGCGTCCCGCGTGAGGAGATGGAAGGC
GTTGGCATACCCCTGGACCTGCTCCCCATGCCCTACCACCTGCCGGGCCC
GAGCTACACATTCCCGCAGGACCGGCCGTGGGTGGCGCCGAGAGAGGAGG
ATGGGGTGGGAGCAGAGGACCAGGGCCAGGCCCAGGACCCTGGGCCCTGG
GGCCGGGGCCAGGAATGGCAGGAGGTGAAGCAGGGGTGGGAGTGCCACCT
CCCGGACCGCTTCGGCGGGTGCATCCCCTGTCCACCGGACTGGGCCGGGG
AGAATGGGCAGGGCTCGGTGCCGGTGCAATGCCCCATAAGTTGAGTACAA
CGGTGTGGTGCAACCTAAGTTCTGTCGGTGAAATACCCGGCGTGCTCCGT
CCAATAGGACGCGTGGCCAATGGGTTCGGCTACAGCTGGCCAGCGATCCA
CGAGAAGGAGCAAAGACGAGGATCGTTCGGGTCCAGGGCATGCACAGAG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig13:3051932..3054480-

>mRNA_S-ischiensis_contig13.3144.1 ID=mRNA_S-ischiensis_contig13.3144.1|Name=mRNA_S-ischiensis_contig13.3144.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1032bp|location=Sequence derived from alignment at S-ischiensis_contig13:3051932..3054480- (Schizocladia ischiensis KU_0333)
ATGAGCGGCGCCGCCTGGGGCTTGTTGGAGAAGAAGATGAGCGGCGCCGC
CTGGGGCTTGTTGGAGAAGAAGGGCAAGGGGGACCAGGAGCAGCTTTTCA
GCAAGTCGTACGAGCTGGGCGTGATCTTCCTGCCCAGCCGCATTGGCAGG
CGTTGCCCGCCCGGCCACTCCTTCGCGTTCAGCTGCGACCCCACGGGACC
CCTGACCACGAGGGCAAGGGGGACCAGGAGCAGCTTTTCAGCAAGTCGTA
CGAGCTGGGCGTGATCTTCCTGCCCAGCCGCATTGGCAGGCGTTGCCCGC
CCGGCCACTCCTTCGCGTTCAGCTGCGACCCCACGGGACCCCTGACCACG
AGGTACCCCCTCACCTACGGCGGCGTCCCGCGTGAGGAGATGGAAGGCGT
TGGCATACCCCTGGACCTGCTCCCCATGCCCTACCACCTGCCGGGCCCGA
GCTACACATTCCCGCAGGACCGGCCGTGGGTGGCGCCGAGAGAGGAGGAT
GGGGTGGGAGCAGAGGACCAGGGCCAGGCCCAGGACCCTGGGCCCTGGGG
CCGGGGCCAGGAATGGCAGGAGGTGAAGCAGGGGTGGGAGTGCCACCTCC
CGGACCGCTTCGGCGGGTGCATCCCCTGTCCACCGGACTGGGCCGGGGAG
AATGGGCAGGGCTCGGTGCCGGTGCAATGCCCCATAAGTTGAGTACCCCC
TCACCTACGGCGGCGTCCCGCGTGAGGAGATGGAAGGCGTTGGCATACCC
CTGGACCTGCTCCCCATGCCCTACCACCTGCCGGGCCCGAGCTACACATT
CCCGCAGGACCGGCCGTGGGTGGCGCCGAGAGAGGAGGATGGGGTGGGAG
CAGAGGACCAGGGCCAGGCCCAGGACCCTGGGCCCTGGGGCCGGGGCCAG
GAATGGCAGGAGGTGAAGCAGGGGTGGGAGTGCCACCTCCCGGACCGCTT
CGGCGGGTGCATCCCCTGTCCACCGGACTGGGCCGGGGAGAATGGGCAGG
GCTCGGTGCCGGTGCAATGCCCCATAAGTTGA
back to top