mRNA_S-ischiensis_contig127.2856.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig127.2856.1
Unique NamemRNA_S-ischiensis_contig127.2856.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig127.2856.1 vs. uniprot
Match: A0A2Z4MTA2_SACJA (HMG-box containing protein isoform 1 n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2Z4MTA2_SACJA)

HSP 1 Score: 93.2 bits (230), Expect = 1.410e-20
Identity = 43/66 (65.15%), Postives = 54/66 (81.82%), Query Frame = 2 
Query:    2 QDMSIEQNNVINKVLGRLWKLATKDERRVYEEMATKDKLRYLREMKAYRPTQGYEREAPRINIPKG 199
            Q  S+E NN INK+LG++WK AT+ E++ YEE AT DK+RYL+EM AYRP +GYER APRIN+PKG
Sbjct:  263 QGHSLEHNNEINKMLGKVWKTATEQEKKTYEEKATADKVRYLKEMSAYRPPEGYERIAPRINVPKG 328
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig127.2856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2Z4MTA2_SACJA1.410e-2065.15HMG-box containing protein isoform 1 n=1 Tax=Sacch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig127contigS-ischiensis_contig127:26683..27425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHigh mobility group domain protein
Ec32 orthologEc-13_001750.1
Exons3
Model size239
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig127.2856.1prot_S-ischiensis_contig127.2856.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig127 26690..27425 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.400672-UTR-S-ischiensis_contig127:26682..266891622815670.400672-UTR-S-ischiensis_contig127:26682..26689Schizocladia ischiensis KU_0333UTRS-ischiensis_contig127 26683..26689 +
1695739841.2791097-UTR-S-ischiensis_contig127:26682..266891695739841.2791097-UTR-S-ischiensis_contig127:26682..26689Schizocladia ischiensis KU_0333UTRS-ischiensis_contig127 26683..26689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.4156754-CDS-S-ischiensis_contig127:26689..268121622815670.4156754-CDS-S-ischiensis_contig127:26689..26812Schizocladia ischiensis KU_0333CDSS-ischiensis_contig127 26690..26812 +
1695739841.2868857-CDS-S-ischiensis_contig127:26689..268121695739841.2868857-CDS-S-ischiensis_contig127:26689..26812Schizocladia ischiensis KU_0333CDSS-ischiensis_contig127 26690..26812 +
1622815670.4260972-CDS-S-ischiensis_contig127:27173..272231622815670.4260972-CDS-S-ischiensis_contig127:27173..27223Schizocladia ischiensis KU_0333CDSS-ischiensis_contig127 27174..27223 +
1695739841.2945783-CDS-S-ischiensis_contig127:27173..272231695739841.2945783-CDS-S-ischiensis_contig127:27173..27223Schizocladia ischiensis KU_0333CDSS-ischiensis_contig127 27174..27223 +
1622815670.4371736-CDS-S-ischiensis_contig127:27367..274251622815670.4371736-CDS-S-ischiensis_contig127:27367..27425Schizocladia ischiensis KU_0333CDSS-ischiensis_contig127 27368..27425 +
1695739841.302471-CDS-S-ischiensis_contig127:27367..274251695739841.302471-CDS-S-ischiensis_contig127:27367..27425Schizocladia ischiensis KU_0333CDSS-ischiensis_contig127 27368..27425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig127.2856.1

>prot_S-ischiensis_contig127.2856.1 ID=prot_S-ischiensis_contig127.2856.1|Name=mRNA_S-ischiensis_contig127.2856.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=77bp
MSIEQNNVINKVLGRLWKLATKDERRVYEEMATKDKLRYLREMKAYRPTQ
GYEREAPRINIPKGGDSKALALEFDTP
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mRNA from alignment at S-ischiensis_contig127:26683..27425+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig127.2856.1 ID=mRNA_S-ischiensis_contig127.2856.1|Name=mRNA_S-ischiensis_contig127.2856.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=743bp|location=Sequence derived from alignment at S-ischiensis_contig127:26683..27425+ (Schizocladia ischiensis KU_0333)
TCAGGACATGTCCATCGAGCAGAACAACGTCATCAACAAAGTTCTTGGGA
GACTGTGGAAACTGGCCACAAAGGACGAGAGGCGGGTGTACGAGGAAATG
GCGACCAAGGACAAGCTTCGGTATCTGCGGGTCAGTGACAATAGTTGTGC
TCGTGCTTGTACTACAATACTAGCCCACATGCCAGAAGCTTCTGGGCATC
GGGGGACTGTGTGCACTCGTGCGGCCAAGTTCAAATGAACTTTGTTGCTC
GTACCCTACGTATTTCCTCCATCCTCCTACCTCTTGTACGTGTTCCAAGG
CACCTTGCCGGAAAGATTGTGTTGCATCGTACTTCCAAGTAATCTGCAGT
AGTGCAGCACAATGAACAAAGCACTTTGAAGTAATACTACTGCCGTATAT
GTTTTCCAGGTTTTTTTTATACTTCACCTGCACACTTATCTCCCTCTGTT
TGGCACCTATTCCGGCTTCTTTCCCCCCGCACCCCGCACAGGAGATGAAA
GCTTACCGGCCAACGCAAGGATATGAGCGCGAAGCCCCACGGTGAGAAGA
CGAGGGTTTTCGATGGCCTTTGGAGCTGGTGGCTGCTGTGAAGCATCTTG
TCTCGTAAACTCTGTGCCAGCAGCGATGAGTGCTACTCTGACTGCCTACC
ACCGAACGATTCCCCTGTGTGTGACGATTCCCCAGTATTAACATCCCCAA
AGGCGGTGATTCGAAGGCTCTGGCCCTGGAGTTTGACACTCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig127:26683..27425+

>mRNA_S-ischiensis_contig127.2856.1 ID=mRNA_S-ischiensis_contig127.2856.1|Name=mRNA_S-ischiensis_contig127.2856.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=462bp|location=Sequence derived from alignment at S-ischiensis_contig127:26683..27425+ (Schizocladia ischiensis KU_0333)
ATGTCCATCGAGCAGAACAACGTCATCAACAAAGTTCTTGGGAGACTGTG
GAAACTGGCCACAAAGGACGAGAGGCGGGTGTACGAGGAAATGGCGACCA
AGGACAAGCTTCGGTATCTGCGGATGTCCATCGAGCAGAACAACGTCATC
AACAAAGTTCTTGGGAGACTGTGGAAACTGGCCACAAAGGACGAGAGGCG
GGTGTACGAGGAAATGGCGACCAAGGACAAGCTTCGGTATCTGCGGGAGA
TGAAAGCTTACCGGCCAACGCAAGGATATGAGCGCGAAGCCCCACGGAGA
TGAAAGCTTACCGGCCAACGCAAGGATATGAGCGCGAAGCCCCACGTATT
AACATCCCCAAAGGCGGTGATTCGAAGGCTCTGGCCCTGGAGTTTGACAC
TCCCTATTAACATCCCCAAAGGCGGTGATTCGAAGGCTCTGGCCCTGGAG
TTTGACACTCCC
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