mRNA_S-ischiensis_contig12.2670.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2670.1
Unique NamemRNA_S-ischiensis_contig12.2670.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig12.2670.1 vs. uniprot
Match: D8LFM1_ECTSI (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFM1_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 2.440e-11
Identity = 41/78 (52.56%), Postives = 46/78 (58.97%), Query Frame = 2 
Query:    2 RRLLWSGGDEMDPGLAPPGPVTEDLLLLQQSHEQAVRRLGGTVLRADMASYLSANPG-----AVFADFVRWYRPHWWE 220
            RRLL SG     P L   GPVTED+L  QQ+  QA    G  VL ADM ++ S N G     AVFADFVRWYRP  W+
Sbjct: 1228 RRLLCSGAAVRPPRLQECGPVTEDMLR-QQTLGQAAAYRGREVLLADMTAFRSENGGGDGDAAVFADFVRWYRPECWQ 1304
[Close]
BLAST of mRNA_S-ischiensis_contig12.2670.1 vs. uniprot
Match: A0A6H5JCY7_9PHAE (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY7_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 4.550e-11
Identity = 40/78 (51.28%), Postives = 46/78 (58.97%), Query Frame = 2 
Query:    2 RRLLWSGGDEMDPGLAPPGPVTEDLLLLQQSHEQAVRRLGGTVLRADMASYLSANPG-----AVFADFVRWYRPHWWE 220
            RRLL SG     P L   GPVTED+L  QQ+  QA    G  VL ADM ++ + N G     AVFADFVRWYRP  W+
Sbjct: 1236 RRLLCSGAAVRPPRLQESGPVTEDMLK-QQTLGQAPAYRGREVLLADMTAFRAENDGGDRDAAVFADFVRWYRPECWQ 1312
[Close]
BLAST of mRNA_S-ischiensis_contig12.2670.1 vs. uniprot
Match: A0A024GG04_9STRA (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GG04_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 4.910e-9
Identity = 36/96 (37.50%), Postives = 48/96 (50.00%), Query Frame = 2 
Query:    5 RLLWSGGDEMDPGLAPPGPVTEDLLLLQQSHEQAVRRLGGT-------------VLRADMASYLSANPGAVFADFVRWYRPHWWEPCGGGEEAEVA 253
            +LL +G    +P L    P+TED+    Q HE+ + RLGGT              L +DM ++ +ANPGAV ADF+RWY P  W     G     A
Sbjct:  852 KLLLTGATMNEPILQAALPLTEDIA---QQHEEILTRLGGTSESVRLRQEMQSATLVSDMQAFKAANPGAVLADFIRWYTPKDWTSFEQGFSVSTA 944
[Close]
BLAST of mRNA_S-ischiensis_contig12.2670.1 vs. uniprot
Match: A0A6H5L3A9_9PHAE (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3A9_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 2.090e-7
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 2 
Query:   86 QQSHEQAVRRLGGTVLRADMASYLSANPGAVFADFVRWYRP-HWWEPCGGGEEAEVA 253
            QQS+ +A  RL  + L ADM  +LSANPGAVFADF+RWY P +W +   GG+ A VA
Sbjct: 1163 QQSNTRA-SRLRLSTLSADMQCFLSANPGAVFADFLRWYSPPNWSDGPEGGDAACVA 1218
[Close]
BLAST of mRNA_S-ischiensis_contig12.2670.1 vs. uniprot
Match: A0A7S4IBV9_9EUKA (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IBV9_9EUKA)

HSP 1 Score: 53.1 bits (126), Expect = 3.330e-6
Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = 2 
Query:   38 PGLAPPGPVTEDLLLLQQSHEQAVRRLGGTV-----LRADMASYLSANPGAVFADFVRWYRPHWWEPCGGGEEA 244
            P +   G V+ED++  QQ   QA+   G +      L++DM S+ +ANPG VFADFVRWY P  W     G++A
Sbjct:  234 PKIQSVGLVSEDMIEEQQ---QALESEGDSSQHHAQLKSDMQSFKAANPGCVFADFVRWYSPADWLEENSGDQA 304
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LFM1_ECTSI2.440e-1152.56Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A6H5JCY7_9PHAE4.550e-1151.28Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A024GG04_9STRA4.910e-937.50Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A6H5L3A9_9PHAE2.090e-756.14Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A7S4IBV9_9EUKA3.330e-641.89Rab3 GTPase-activating protein catalytic subunit n... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:2061477..2062008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size254
Cds size222
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2670.1prot_S-ischiensis_contig12.2670.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 2061508..2062008 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815653.9045937-UTR-S-ischiensis_contig12:2061476..20615071622815653.9045937-UTR-S-ischiensis_contig12:2061476..2061507Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 2061477..2061507 +
1695739830.4145916-UTR-S-ischiensis_contig12:2061476..20615071695739830.4145916-UTR-S-ischiensis_contig12:2061476..2061507Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 2061477..2061507 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815653.9234805-CDS-S-ischiensis_contig12:2061507..20615791622815653.9234805-CDS-S-ischiensis_contig12:2061507..2061579Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2061508..2061579 +
1695739830.4245849-CDS-S-ischiensis_contig12:2061507..20615791695739830.4245849-CDS-S-ischiensis_contig12:2061507..2061579Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2061508..2061579 +
1622815653.9358513-CDS-S-ischiensis_contig12:2061858..20620081622815653.9358513-CDS-S-ischiensis_contig12:2061858..2062008Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2061859..2062008 +
1695739830.4344962-CDS-S-ischiensis_contig12:2061858..20620081695739830.4344962-CDS-S-ischiensis_contig12:2061858..2062008Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2061859..2062008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2670.1

>prot_S-ischiensis_contig12.2670.1 ID=prot_S-ischiensis_contig12.2670.1|Name=mRNA_S-ischiensis_contig12.2670.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=74bp
MDPGLAPPGPVTEDLLLLQQSHEQAVRRLGGTVLRADMASYLSANPGAVF
ADFVRWYRPHWWEPCGGGEEAEVA
back to top

mRNA from alignment at S-ischiensis_contig12:2061477..2062008+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2670.1 ID=mRNA_S-ischiensis_contig12.2670.1|Name=mRNA_S-ischiensis_contig12.2670.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=532bp|location=Sequence derived from alignment at S-ischiensis_contig12:2061477..2062008+ (Schizocladia ischiensis KU_0333)
GCGGCGGCTTCTGTGGAGTGGTGGCGATGAGATGGATCCGGGACTGGCGC
CGCCGGGGCCTGTGACAGAGGACCTGTTGTTGCTGCAGCAGTCTCACGAG
CAGGTGTGCGCGCCGACTGAGTGTGTGTGTGTGTGTGTGCGCGCGCGCCC
GTGCGTGTGCATGTGCGTGTGTGTGCTGTGTGTGCGGGTGCTTCTTCTGT
GCACAGATGGGTGTGTGTGCGCGCGTGAGCGCGCGTGCGTGCGTGCGTGC
GTGCAATTACACTGTGCTTGGCATAGCCCTGGGCAGGAAAGCACTATTGT
AGGCGGGATCGTAAGCACAGTTCATGTATCCTCACTCACACTCGAAGACG
CCAACTGAATAGTCCACCACACCGTTCGCCAGGCGGTGCGTCGTCTGGGC
GGCACGGTCCTCCGCGCGGACATGGCCTCCTACCTTTCAGCAAACCCCGG
CGCCGTCTTTGCCGACTTTGTGCGCTGGTACCGGCCCCACTGGTGGGAGC
CGTGCGGCGGGGGAGAGGAGGCAGAGGTAGCG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig12:2061477..2062008+

>mRNA_S-ischiensis_contig12.2670.1 ID=mRNA_S-ischiensis_contig12.2670.1|Name=mRNA_S-ischiensis_contig12.2670.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=444bp|location=Sequence derived from alignment at S-ischiensis_contig12:2061477..2062008+ (Schizocladia ischiensis KU_0333)
ATGGATCCGGGACTGGCGCCGCCGGGGCCTGTGACAGAGGACCTGTTGTT
GCTGCAGCAGTCTCACGAGCAGATGGATCCGGGACTGGCGCCGCCGGGGC
CTGTGACAGAGGACCTGTTGTTGCTGCAGCAGTCTCACGAGCAGGCGGTG
CGTCGTCTGGGCGGCACGGTCCTCCGCGCGGACATGGCCTCCTACCTTTC
AGCAAACCCCGGCGCCGTCTTTGCCGACTTTGTGCGCTGGTACCGGCCCC
ACTGGTGGGAGCCGTGCGGCGGGGGAGAGGAGGCAGAGGTAGCGGCGGTG
CGTCGTCTGGGCGGCACGGTCCTCCGCGCGGACATGGCCTCCTACCTTTC
AGCAAACCCCGGCGCCGTCTTTGCCGACTTTGTGCGCTGGTACCGGCCCC
ACTGGTGGGAGCCGTGCGGCGGGGGAGAGGAGGCAGAGGTAGCG
back to top