prot_S-ischiensis_contig12.2670.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig12.2670.1
Unique Nameprot_S-ischiensis_contig12.2670.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length74
Homology
BLAST of mRNA_S-ischiensis_contig12.2670.1 vs. uniprot
Match: D8LFM1_ECTSI (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFM1_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 5.470e-8
Identity = 35/66 (53.03%), Postives = 40/66 (60.61%), Query Frame = 0
Query:    3 PGLAPPGPVTEDLLLLQQSHEQAVRRLGGTVLRADMASYLSANPG-----AVFADFVRWYRPHWWE 63
            P L   GPVTED+L  QQ+  QA    G  VL ADM ++ S N G     AVFADFVRWYRP  W+
Sbjct: 1240 PRLQECGPVTEDMLR-QQTLGQAAAYRGREVLLADMTAFRSENGGGDGDAAVFADFVRWYRPECWQ 1304          
BLAST of mRNA_S-ischiensis_contig12.2670.1 vs. uniprot
Match: A0A6H5JCY7_9PHAE (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY7_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.020e-7
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 0
Query:    3 PGLAPPGPVTEDLLLLQQSHEQAVRRLGGTVLRADMASYLSANPG-----AVFADFVRWYRPHWWE 63
            P L   GPVTED+L  QQ+  QA    G  VL ADM ++ + N G     AVFADFVRWYRP  W+
Sbjct: 1248 PRLQESGPVTEDMLK-QQTLGQAPAYRGREVLLADMTAFRAENDGGDRDAAVFADFVRWYRPECWQ 1312          
BLAST of mRNA_S-ischiensis_contig12.2670.1 vs. uniprot
Match: A0A6H5L3A9_9PHAE (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3A9_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.400e-7
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 0
Query:   19 QQSHEQAVRRLGGTVLRADMASYLSANPGAVFADFVRWYRP-HWWEPCGGGEEAEVA 74
            QQS+ +A  RL  + L ADM  +LSANPGAVFADF+RWY P +W +   GG+ A VA
Sbjct: 1163 QQSNTRA-SRLRLSTLSADMQCFLSANPGAVFADFLRWYSPPNWSDGPEGGDAACVA 1218          
BLAST of mRNA_S-ischiensis_contig12.2670.1 vs. uniprot
Match: A0A024GG04_9STRA (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GG04_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.570e-7
Identity = 31/78 (39.74%), Postives = 40/78 (51.28%), Query Frame = 0
Query:   10 PVTEDLLLLQQSHEQAVRRLGGT-------------VLRADMASYLSANPGAVFADFVRWYRPHWWEPCGGGEEAEVA 74
            P+TED+    Q HE+ + RLGGT              L +DM ++ +ANPGAV ADF+RWY P  W     G     A
Sbjct:  870 PLTEDIA---QQHEEILTRLGGTSESVRLRQEMQSATLVSDMQAFKAANPGAVLADFIRWYTPKDWTSFEQGFSVSTA 944          
BLAST of mRNA_S-ischiensis_contig12.2670.1 vs. uniprot
Match: A0A7S4IBV9_9EUKA (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IBV9_9EUKA)

HSP 1 Score: 52.0 bits (123), Expect = 5.790e-6
Identity = 30/68 (44.12%), Postives = 41/68 (60.29%), Query Frame = 0
Query:    9 GPVTEDLLLLQQSHEQAVRRLGGTV-----LRADMASYLSANPGAVFADFVRWYRPHWWEPCGGGEEA 71
            G V+ED++  QQ   QA+   G +      L++DM S+ +ANPG VFADFVRWY P  W     G++A
Sbjct:  240 GLVSEDMIEEQQ---QALESEGDSSQHHAQLKSDMQSFKAANPGCVFADFVRWYSPADWLEENSGDQA 304          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2670.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LFM1_ECTSI5.470e-853.03Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A6H5JCY7_9PHAE1.020e-751.52Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A6H5L3A9_9PHAE1.400e-756.14Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A024GG04_9STRA3.570e-739.74Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A7S4IBV9_9EUKA5.790e-644.12Rab3 GTPase-activating protein catalytic subunit n... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026147Rab3 GTPase-activating protein catalytic subunitPFAMPF13890Rab3-GTPase_catcoord: 21..64
e-value: 2.2E-11
score: 43.6
IPR026147Rab3 GTPase-activating protein catalytic subunitPANTHERPTHR21422FAMILY NOT NAMEDcoord: 6..64

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:2061508..2062008 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2670.1mRNA_S-ischiensis_contig12.2670.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig12 2061477..2062008 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig12.2670.1 ID=prot_S-ischiensis_contig12.2670.1|Name=mRNA_S-ischiensis_contig12.2670.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=74bp
MDPGLAPPGPVTEDLLLLQQSHEQAVRRLGGTVLRADMASYLSANPGAVF
ADFVRWYRPHWWEPCGGGEEAEVA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026147Rab3-GAP_cat_su