mRNA_S-ischiensis_contig12.2653.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2653.1
Unique NamemRNA_S-ischiensis_contig12.2653.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig12.2653.1 vs. uniprot
Match: A0A2P6NNA0_9EUKA (Peregrin-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NNA0_9EUKA)

HSP 1 Score: 69.7 bits (169), Expect = 1.710e-10
Identity = 35/117 (29.91%), Postives = 49/117 (41.88%), Query Frame = 1 
Query:  196 WRERAEGKEKQAHNDEQVMCSVCGDGRVDSLGARVICDHCSISVHPSCYGITEEEEEEGSDEWYCDFCTYNINVQGLVDYEEGEGGHRLVNGKGPHDAGPVCVLCPVTGGELLPTDE 546
            W+++ E + +    +E V+CSVCG+G  D     V CD C I+VH  CYG++   E E    W C+ C   +                           P C LC  +GG   PT E
Sbjct:  156 WKKKEEMQNEAKKREEDVLCSVCGNGDSDETNMIVFCDGCDIAVHQQCYGVSSIPEGE----WLCEPCELKLQ--------------------------PNCALCKQSGGAFKPTTE 242
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BLAST of mRNA_S-ischiensis_contig12.2653.1 vs. uniprot
Match: W7TVB1_9STRA (Bromodomain containing 1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVB1_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.350e-8
Identity = 31/104 (29.81%), Postives = 47/104 (45.19%), Query Frame = 1 
Query:  235 NDEQVMCSVCGDGRVDSLGARVICDHCSISVHPSCYGITEEEEEEGSDEWYCDFCTYNINVQGLVDYEEGEGGHRLVNGKGPHDAGPVCVLCPVTGGELLPTDE 546
            ++E ++C+VCG+G  +     V+CDHC +SVH  CYG+    E     +W+C  C Y ++             H++            C LC   GG L PT  
Sbjct:   26 SEEDILCTVCGEGHSEVENQIVLCDHCDLSVHQGCYGV----EAIPVGKWFCRLCEYGMDC------------HKV-----------RCSLCGHGGGALKPTTS 102
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BLAST of mRNA_S-ischiensis_contig12.2653.1 vs. uniprot
Match: A0A7R8CLY1_LEPSM ((salmon louse) hypothetical protein n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A7R8CLY1_LEPSM)

HSP 1 Score: 56.6 bits (135), Expect = 4.980e-6
Identity = 31/104 (29.81%), Postives = 39/104 (37.50%), Query Frame = 1 
Query:  250 MCSVCGDGRVDSLGARVICDHCSISVHPSCYGITEEEE------EEGSDEWYCDFCTYNINVQGLVDYEEGEGGHRLVNGKGPHDAGPVCVLCPVTGGELLPTD 543
            +C+ C     +     V CD C ISVH +CYGITE         E  ++ W+CD C   I                           P+C LCP  GG    TD
Sbjct:   73 VCACCLGTSSNDANEIVECDGCGISVHETCYGITESGSVASNISEASTEPWFCDPCQAGITTS------------------------PICELCPAIGGVYKETD 152
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BLAST of mRNA_S-ischiensis_contig12.2653.1 vs. uniprot
Match: A0A1R2CKE4_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CKE4_9CILI)

HSP 1 Score: 56.6 bits (135), Expect = 5.140e-6
Identity = 29/104 (27.88%), Postives = 40/104 (38.46%), Query Frame = 1 
Query:  235 NDEQVMCSVCGDGRVDSLGARVICDHCSISVHPSCYGITEEEEEEGSDEWYCDFCTYNINVQGLVDYEEGEGGHRLVNGKGPHDAGPVCVLCPVTGGELLPTDE 546
            N+E  +CS+CGDG  +     VIC  C +  H  CYGI    + +    W C  C+   N     +                      C LCP+ GG + PT  
Sbjct:  262 NEEDFVCSICGDGDYEDDDLIVICSSCEMGAHMKCYGIPVVPDTD----WICHGCSSIKNKDERANIR--------------------CALCPIKGGCVKPTTH 341
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BLAST of mRNA_S-ischiensis_contig12.2653.1 vs. uniprot
Match: A0A1R2AUV0_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AUV0_9CILI)

HSP 1 Score: 55.8 bits (133), Expect = 9.320e-6
Identity = 30/102 (29.41%), Postives = 42/102 (41.18%), Query Frame = 1 
Query:  235 NDEQVMCSVCGDGRVDSLGARVICDHCSISVHPSCYGITEEEEEEGSDEWYCDFCTYNINVQGLVDYEEGEGGHRLVNGKGPHDAGPVCVLCPVTGGELLPT 540
            N++  +CS+CGDG  D     VIC +C I+ H  CYGI    + +    W C  C        ++  +E     R             C LCP  GG +  T
Sbjct:  219 NEDDYICSICGDGDYDDDNLIVICSNCEIAAHVKCYGIPIIPDTD----WICQACL-------IIKNQEARSNIR-------------CALCPKKGGCIKQT 296
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BLAST of mRNA_S-ischiensis_contig12.2653.1 vs. uniprot
Match: A0A1R2B5Z9_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2B5Z9_9CILI)

HSP 1 Score: 55.5 bits (132), Expect = 1.270e-5
Identity = 29/102 (28.43%), Postives = 40/102 (39.22%), Query Frame = 1 
Query:  235 NDEQVMCSVCGDGRVDSLGARVICDHCSISVHPSCYGITEEEEEEGSDEWYCDFCTYNINVQGLVDYEEGEGGHRLVNGKGPHDAGPVCVLCPVTGGELLPT 540
            N+E  +CS+CGDG  +     VIC  C +  H  CYGI    + +    W C  C+   N     +                      C LCP+ GG + PT
Sbjct:  262 NEEDFVCSICGDGDYEDDDLIVICSSCEMGAHMKCYGIPVVPDTD----WICHGCSSIKNKDERSNIR--------------------CALCPIKGGCVKPT 339
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2P6NNA0_9EUKA1.710e-1029.91Peregrin-like n=1 Tax=Planoprotostelium fungivorum... [more]
W7TVB1_9STRA1.350e-829.81Bromodomain containing 1 n=3 Tax=Monodopsidaceae T... [more]
A0A7R8CLY1_LEPSM4.980e-629.81(salmon louse) hypothetical protein n=1 Tax=Lepeop... [more]
A0A1R2CKE4_9CILI5.140e-627.88Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A1R2AUV0_9CILI9.320e-629.41Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A1R2B5Z9_9CILI1.270e-528.43Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:1803371..1804398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue4.5e-07
Seed eggNOG ortholog296587.XP_002504772.1
KEGG koko:K11654
EggNOG free text desc.chromatin organization
EggNOG OGsCOG0553@1,COG5141@1,KOG0385@2759,KOG0955@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size581
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2653.1prot_S-ischiensis_contig12.2653.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 1803403..1804281 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815652.2843602-UTR-S-ischiensis_contig12:1803370..18034021622815652.2843602-UTR-S-ischiensis_contig12:1803370..1803402Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 1803371..1803402 -
1695739829.3125257-UTR-S-ischiensis_contig12:1803370..18034021695739829.3125257-UTR-S-ischiensis_contig12:1803370..1803402Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 1803371..1803402 -
1622815652.3204062-UTR-S-ischiensis_contig12:1804281..18043981622815652.3204062-UTR-S-ischiensis_contig12:1804281..1804398Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 1804282..1804398 -
1695739829.3438923-UTR-S-ischiensis_contig12:1804281..18043981695739829.3438923-UTR-S-ischiensis_contig12:1804281..1804398Schizocladia ischiensis KU_0333UTRS-ischiensis_contig12 1804282..1804398 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815652.2967515-CDS-S-ischiensis_contig12:1803402..18035851622815652.2967515-CDS-S-ischiensis_contig12:1803402..1803585Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1803403..1803585 -
1695739829.323673-CDS-S-ischiensis_contig12:1803402..18035851695739829.323673-CDS-S-ischiensis_contig12:1803402..1803585Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1803403..1803585 -
1622815652.3090773-CDS-S-ischiensis_contig12:1804032..18042811622815652.3090773-CDS-S-ischiensis_contig12:1804032..1804281Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1804033..1804281 -
1695739829.3333673-CDS-S-ischiensis_contig12:1804032..18042811695739829.3333673-CDS-S-ischiensis_contig12:1804032..1804281Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 1804033..1804281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2653.1

>prot_S-ischiensis_contig12.2653.1 ID=prot_S-ischiensis_contig12.2653.1|Name=mRNA_S-ischiensis_contig12.2653.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=144bp
MLPTEAVAERGRHRQVEQALPSLLANWRERAEGKEKQAHNDEQVMCSVCG
DGRVDSLGARVICDHCSISVHPSCYGITEEEEEEGSDEWYCDFCTYNINV
QGLVDYEEGEGGHRLVNGKGPHDAGPVCVLCPVTGGELLPTDE*
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mRNA from alignment at S-ischiensis_contig12:1803371..1804398-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2653.1 ID=mRNA_S-ischiensis_contig12.2653.1|Name=mRNA_S-ischiensis_contig12.2653.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1028bp|location=Sequence derived from alignment at S-ischiensis_contig12:1803371..1804398- (Schizocladia ischiensis KU_0333)
TGACAGGTCACGATCTGTACGAGCGGCTTCTTTTTACCAGGACCCGAGCG
ATTGCAAGTGCAACGCTCAGGCTGCCCCGTCTCAACGGACCTTCATCTTG
CTCCCTTTCCCCCCCCCATGCTCCCGACAGAGGCTGTGGCTGAGCGGGGG
AGGCACCGCCAGGTAGAGCAGGCTTTGCCGAGCCTCCTGGCAAATTGGAG
GGAGCGTGCTGAGGGGAAGGAAAAGCAGGCACACAACGACGAGCAGGTCA
TGTGCAGCGTCTGCGGCGACGGTCGCGTGGACAGTCTCGGGGCCCGTGTG
ATATGCGACCATTGCAGCATATCCGTGCACCCGAGCTGCTATGGCATCAC
GGAAGAAGAAGAAGAGGTACTATGTAGCCCTCCTATGGTGTGCGTGCGCG
ACGGGCAGGCCCCGACTCCGACCCTCTCTAGTCCTATCCTTGCTCCCCAA
TCCCCAAACAAGTGCACCACCTCCACACGCTTTCCGGTCCCCCCCGCCCC
TTCCCTCCCCCTCCCCCCCCTCCCCTCTCCCTCCGCCACCCCTGCCCCGG
CCCCCGTCCCCGCCACCACCCCCGCCTTCTCAGCCTCCTCGTCTTCCTCC
TCTTCTTTCTCTTCCGCTGCTGCCACGGCCCCCGCCGCCGCCGCTCCCGC
CTCCGCCGCCTCCGGGGCGCCGCCGCCTCTGCACCCTACGCCGTCTCCGC
CTCCTCCTCCCCCAACCGTCCTCCCCCTACCCTCCTTCTCCTGCCTACCC
CCCCCCACCCCTGACCCCTCTCTCCTCTTTTGCCCCTCCCTGTCCTCCCA
TTCCTTCCTGCAGGAGGGGTCGGACGAGTGGTACTGCGACTTCTGCACCT
ACAACATCAATGTGCAGGGCTTGGTGGACTACGAAGAGGGGGAGGGGGGT
CATCGCCTTGTCAACGGCAAGGGACCCCACGATGCCGGACCCGTCTGCGT
CCTGTGCCCGGTCACCGGAGGGGAGCTTCTGCCCACAGACGAGTAGTGTC
GGCCGTGGCCATGACACTGGAGGTGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:1803371..1804398-

>mRNA_S-ischiensis_contig12.2653.1 ID=mRNA_S-ischiensis_contig12.2653.1|Name=mRNA_S-ischiensis_contig12.2653.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=864bp|location=Sequence derived from alignment at S-ischiensis_contig12:1803371..1804398- (Schizocladia ischiensis KU_0333)
ATGCTCCCGACAGAGGCTGTGGCTGAGCGGGGGAGGCACCGCCAGGTAGA
GCAGGCTTTGCCGAGCCTCCTGGCAAATTGGAGGGAGCGTGCTGAGGGGA
AGGAAAAGCAGGCACACAACGACGAGCAGGTCATGTGCAGCGTCTGCGGC
GACGGTCGCGTGGACAGTCTCGGGGCCCGTGTGATATGCGACCATTGCAG
CATATCCGTGCACCCGAGCTGCTATGGCATCACGGAAGAAGAAGAAGAGA
TGCTCCCGACAGAGGCTGTGGCTGAGCGGGGGAGGCACCGCCAGGTAGAG
CAGGCTTTGCCGAGCCTCCTGGCAAATTGGAGGGAGCGTGCTGAGGGGAA
GGAAAAGCAGGCACACAACGACGAGCAGGTCATGTGCAGCGTCTGCGGCG
ACGGTCGCGTGGACAGTCTCGGGGCCCGTGTGATATGCGACCATTGCAGC
ATATCCGTGCACCCGAGCTGCTATGGCATCACGGAAGAAGAAGAAGAGGA
GGGGTCGGACGAGTGGTACTGCGACTTCTGCACCTACAACATCAATGTGC
AGGGCTTGGTGGACTACGAAGAGGGGGAGGGGGGTCATCGCCTTGTCAAC
GGCAAGGGACCCCACGATGCCGGACCCGTCTGCGTCCTGTGCCCGGTCAC
CGGAGGGGAGCTTCTGCCCACAGACGAGTAGGAGGGGTCGGACGAGTGGT
ACTGCGACTTCTGCACCTACAACATCAATGTGCAGGGCTTGGTGGACTAC
GAAGAGGGGGAGGGGGGTCATCGCCTTGTCAACGGCAAGGGACCCCACGA
TGCCGGACCCGTCTGCGTCCTGTGCCCGGTCACCGGAGGGGAGCTTCTGC
CCACAGACGAGTAG
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