mRNA_S-ischiensis_contig12.2739.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2739.1
Unique NamemRNA_S-ischiensis_contig12.2739.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:2720099..2720591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size493
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.5725145-CDS-S-ischiensis_contig12:2720098..27205901622815639.5725145-CDS-S-ischiensis_contig12:2720098..2720590Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2720099..2720590 +
1695739820.2516813-CDS-S-ischiensis_contig12:2720098..27205901695739820.2516813-CDS-S-ischiensis_contig12:2720098..2720590Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2720099..2720590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2739.1prot_S-ischiensis_contig12.2739.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 2720099..2720590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2739.1

>prot_S-ischiensis_contig12.2739.1 ID=prot_S-ischiensis_contig12.2739.1|Name=mRNA_S-ischiensis_contig12.2739.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=164bp
PKTTRARAAPPPPLGGARKRRLWWPWHGGHRRPRLPHRARRRQFHHHRQP
RRQQQQQRFFHFRFRRPPLPRPRRARRRQLHHHRQWRRQQQQQFSHFHFC
LRRPPLPPLPPPPRPTGPPPHGPQAHRQPKPRPAGGRTPPPPRPATPGAA
PTPGGSPALPTPPS
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mRNA from alignment at S-ischiensis_contig12:2720099..2720591+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2739.1 ID=mRNA_S-ischiensis_contig12.2739.1|Name=mRNA_S-ischiensis_contig12.2739.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=493bp|location=Sequence derived from alignment at S-ischiensis_contig12:2720099..2720591+ (Schizocladia ischiensis KU_0333)
CCAAAAACGACACGCGCACGTGCAGCTCCCCCCCCCCCACTAGGGGGAGC
ACGGAAGCGGCGACTATGGTGGCCGTGGCATGGCGGCCACCGTCGCCCAC
GTCTGCCTCACCGCGCCCGTCGTCGGCAGTTTCACCATCACCGTCAACCG
CGGCGGCAGCAGCAGCAGCAGCGGTTCTTCCACTTTCGCTTTCGCCGCCC
GCCATTGCCCCGGCCTCGCCGTGCCCGTCGTCGCCAGCTTCATCACCACC
GTCAGTGGCGGCGGCAGCAGCAGCAGCAGTTCTCCCACTTTCACTTTTGC
CTTCGCCGCCCGCCATTGCCACCTCTGCCGCCGCCACCACGGCCGACAGG
TCCACCTCCGCATGGGCCACAGGCGCACCGCCAACCCAAGCCTCGGCCCG
CAGGCGGCAGGACCCCGCCGCCGCCGCGCCCTGCCACGCCTGGGGCAGCT
CCAACACCCGGCGGTTCCCCGGCTCTGCCCACGCCGCCCTCGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:2720099..2720591+

>mRNA_S-ischiensis_contig12.2739.1 ID=mRNA_S-ischiensis_contig12.2739.1|Name=mRNA_S-ischiensis_contig12.2739.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=984bp|location=Sequence derived from alignment at S-ischiensis_contig12:2720099..2720591+ (Schizocladia ischiensis KU_0333)
CCAAAAACGACACGCGCACGTGCAGCTCCCCCCCCCCCACTAGGGGGAGC
ACGGAAGCGGCGACTATGGTGGCCGTGGCATGGCGGCCACCGTCGCCCAC
GTCTGCCTCACCGCGCCCGTCGTCGGCAGTTTCACCATCACCGTCAACCG
CGGCGGCAGCAGCAGCAGCAGCGGTTCTTCCACTTTCGCTTTCGCCGCCC
GCCATTGCCCCGGCCTCGCCGTGCCCGTCGTCGCCAGCTTCATCACCACC
GTCAGTGGCGGCGGCAGCAGCAGCAGCAGTTCTCCCACTTTCACTTTTGC
CTTCGCCGCCCGCCATTGCCACCTCTGCCGCCGCCACCACGGCCGACAGG
TCCACCTCCGCATGGGCCACAGGCGCACCGCCAACCCAAGCCTCGGCCCG
CAGGCGGCAGGACCCCGCCGCCGCCGCGCCCTGCCACGCCTGGGGCAGCT
CCAACACCCGGCGGTTCCCCGGCTCTGCCCACGCCGCCCTCGCCAAAAAC
GACACGCGCACGTGCAGCTCCCCCCCCCCCACTAGGGGGAGCACGGAAGC
GGCGACTATGGTGGCCGTGGCATGGCGGCCACCGTCGCCCACGTCTGCCT
CACCGCGCCCGTCGTCGGCAGTTTCACCATCACCGTCAACCGCGGCGGCA
GCAGCAGCAGCAGCGGTTCTTCCACTTTCGCTTTCGCCGCCCGCCATTGC
CCCGGCCTCGCCGTGCCCGTCGTCGCCAGCTTCATCACCACCGTCAGTGG
CGGCGGCAGCAGCAGCAGCAGTTCTCCCACTTTCACTTTTGCCTTCGCCG
CCCGCCATTGCCACCTCTGCCGCCGCCACCACGGCCGACAGGTCCACCTC
CGCATGGGCCACAGGCGCACCGCCAACCCAAGCCTCGGCCCGCAGGCGGC
AGGACCCCGCCGCCGCCGCGCCCTGCCACGCCTGGGGCAGCTCCAACACC
CGGCGGTTCCCCGGCTCTGCCCACGCCGCCCTCG
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