mRNA_S-ischiensis_contig111.2429.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig111.2429.1
Unique NamemRNA_S-ischiensis_contig111.2429.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig111.2429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig111contigS-ischiensis_contig111:112380..113090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size712
Cds size702
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.163689-UTR-S-ischiensis_contig111:112379..1123881622815622.163689-UTR-S-ischiensis_contig111:112379..112388Schizocladia ischiensis KU_0333UTRS-ischiensis_contig111 112380..112388 +
1695739810.028454-UTR-S-ischiensis_contig111:112379..1123881695739810.028454-UTR-S-ischiensis_contig111:112379..112388Schizocladia ischiensis KU_0333UTRS-ischiensis_contig111 112380..112388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.1749651-CDS-S-ischiensis_contig111:112388..1130901622815622.1749651-CDS-S-ischiensis_contig111:112388..113090Schizocladia ischiensis KU_0333CDSS-ischiensis_contig111 112389..113090 +
1695739810.0378075-CDS-S-ischiensis_contig111:112388..1130901695739810.0378075-CDS-S-ischiensis_contig111:112388..113090Schizocladia ischiensis KU_0333CDSS-ischiensis_contig111 112389..113090 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig111.2429.1prot_S-ischiensis_contig111.2429.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig111 112389..113090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig111.2429.1

>prot_S-ischiensis_contig111.2429.1 ID=prot_S-ischiensis_contig111.2429.1|Name=mRNA_S-ischiensis_contig111.2429.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=234bp
MGRSPLRWTCLWMTLPPLAAGTLHVPPKPPATAGDLLAWVACWSALVQTG
RHACTLARGCLQYVPAVEPWAVVAAVAAYQRLSRGSSTLPRPTYSAPGVA
TAEEGREACAMSSRALTERPRPPCRLCLAPLPPTPLPWGRPLPPWPGPGP
PPTETANTCSPRHPSSVPCLAMSSLSAPPRAWQQAPRPHHRLPRRRHRCL
TAPRAQARALPQTQRYLPGRPQRLWWQTLGGLSG
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mRNA from alignment at S-ischiensis_contig111:112380..113090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig111.2429.1 ID=mRNA_S-ischiensis_contig111.2429.1|Name=mRNA_S-ischiensis_contig111.2429.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=711bp|location=Sequence derived from alignment at S-ischiensis_contig111:112380..113090+ (Schizocladia ischiensis KU_0333)
GATTCGCAGATGGGGAGGTCTCCTCTGAGGTGGACCTGCTTGTGGATGAC
CTTGCCCCCGTTGGCTGCGGGAACTCTCCACGTGCCCCCCAAGCCACCAG
CCACAGCAGGCGACCTCCTCGCCTGGGTGGCCTGCTGGTCCGCTCTTGTG
CAGACTGGGAGGCATGCGTGCACCCTGGCGCGAGGCTGCTTGCAGTATGT
GCCAGCCGTGGAGCCATGGGCGGTGGTGGCGGCGGTGGCAGCGTACCAGC
GGCTGTCGCGGGGATCCTCGACCCTGCCGCGGCCTACATACTCCGCTCCA
GGGGTTGCAACGGCCGAGGAGGGCAGGGAAGCATGCGCCATGAGCTCGAG
GGCGTTGACGGAACGGCCCCGACCGCCCTGTCGGTTGTGTCTTGCGCCAT
TGCCCCCGACCCCTCTCCCTTGGGGGCGCCCGCTTCCGCCGTGGCCGGGG
CCGGGCCCGCCGCCGACGGAAACGGCAAACACTTGCTCGCCTCGGCACCC
CTCTTCCGTGCCCTGTTTGGCGATGAGCTCGCTCTCGGCGCCCCCTCGCG
CCTGGCAGCAAGCGCCTCGGCCCCACCACCGCCTGCCCCGTCGCCGCCAT
CGTTGCCTGACAGCGCCACGGGCGCAGGCCCGGGCCCTGCCACAGACACA
GCGCTACCTCCCCGGCAGGCCGCAGCGCTTGTGGTGGCAGACTCTCGGGG
GCTTGTCCGGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig111:112380..113090+

>mRNA_S-ischiensis_contig111.2429.1 ID=mRNA_S-ischiensis_contig111.2429.1|Name=mRNA_S-ischiensis_contig111.2429.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1404bp|location=Sequence derived from alignment at S-ischiensis_contig111:112380..113090+ (Schizocladia ischiensis KU_0333)
ATGGGGAGGTCTCCTCTGAGGTGGACCTGCTTGTGGATGACCTTGCCCCC
GTTGGCTGCGGGAACTCTCCACGTGCCCCCCAAGCCACCAGCCACAGCAG
GCGACCTCCTCGCCTGGGTGGCCTGCTGGTCCGCTCTTGTGCAGACTGGG
AGGCATGCGTGCACCCTGGCGCGAGGCTGCTTGCAGTATGTGCCAGCCGT
GGAGCCATGGGCGGTGGTGGCGGCGGTGGCAGCGTACCAGCGGCTGTCGC
GGGGATCCTCGACCCTGCCGCGGCCTACATACTCCGCTCCAGGGGTTGCA
ACGGCCGAGGAGGGCAGGGAAGCATGCGCCATGAGCTCGAGGGCGTTGAC
GGAACGGCCCCGACCGCCCTGTCGGTTGTGTCTTGCGCCATTGCCCCCGA
CCCCTCTCCCTTGGGGGCGCCCGCTTCCGCCGTGGCCGGGGCCGGGCCCG
CCGCCGACGGAAACGGCAAACACTTGCTCGCCTCGGCACCCCTCTTCCGT
GCCCTGTTTGGCGATGAGCTCGCTCTCGGCGCCCCCTCGCGCCTGGCAGC
AAGCGCCTCGGCCCCACCACCGCCTGCCCCGTCGCCGCCATCGTTGCCTG
ACAGCGCCACGGGCGCAGGCCCGGGCCCTGCCACAGACACAGCGCTACCT
CCCCGGCAGGCCGCAGCGCTTGTGGTGGCAGACTCTCGGGGGCTTGTCCG
GTATGGGGAGGTCTCCTCTGAGGTGGACCTGCTTGTGGATGACCTTGCCC
CCGTTGGCTGCGGGAACTCTCCACGTGCCCCCCAAGCCACCAGCCACAGC
AGGCGACCTCCTCGCCTGGGTGGCCTGCTGGTCCGCTCTTGTGCAGACTG
GGAGGCATGCGTGCACCCTGGCGCGAGGCTGCTTGCAGTATGTGCCAGCC
GTGGAGCCATGGGCGGTGGTGGCGGCGGTGGCAGCGTACCAGCGGCTGTC
GCGGGGATCCTCGACCCTGCCGCGGCCTACATACTCCGCTCCAGGGGTTG
CAACGGCCGAGGAGGGCAGGGAAGCATGCGCCATGAGCTCGAGGGCGTTG
ACGGAACGGCCCCGACCGCCCTGTCGGTTGTGTCTTGCGCCATTGCCCCC
GACCCCTCTCCCTTGGGGGCGCCCGCTTCCGCCGTGGCCGGGGCCGGGCC
CGCCGCCGACGGAAACGGCAAACACTTGCTCGCCTCGGCACCCCTCTTCC
GTGCCCTGTTTGGCGATGAGCTCGCTCTCGGCGCCCCCTCGCGCCTGGCA
GCAAGCGCCTCGGCCCCACCACCGCCTGCCCCGTCGCCGCCATCGTTGCC
TGACAGCGCCACGGGCGCAGGCCCGGGCCCTGCCACAGACACAGCGCTAC
CTCCCCGGCAGGCCGCAGCGCTTGTGGTGGCAGACTCTCGGGGGCTTGTC
CGGT
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