prot_S-ischiensis_contig110.2408.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig110.2408.1
Unique Nameprot_S-ischiensis_contig110.2408.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length179
Homology
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BLAST of mRNA_S-ischiensis_contig110.2408.1 vs. uniprot
Match: A0A7S6ZPC2_9STRA (50S ribosomal protein L6, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPC2_9STRA)

HSP 1 Score: 350 bits (897), Expect = 7.850e-122
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0 
Query:    1 MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTLSLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKGKELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
            MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTLSLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKGKELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK
Sbjct:    1 MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTLSLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKGKELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
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BLAST of mRNA_S-ischiensis_contig110.2408.1 vs. uniprot
Match: A0A0R6MG01_UNDPI (50S ribosomal protein L6, chloroplastic n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6MG01_UNDPI)

HSP 1 Score: 260 bits (664), Expect = 2.540e-86
Identity = 125/178 (70.22%), Postives = 152/178 (85.39%), Query Frame = 0 
Query:    1 MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTLSLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKGKELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
            M RIGKLPIKVP NV+V I    I+VSGPHGKL RKISD+I +  +DN + ++K  ++RI+ QL+GLSRTLINNM++GVS++FER LEL+GVGYR Q+KGK+L+LNLGYSHPI++ IP GIE++VE N  +I+ GFD ELVGQ AATIR+KRPPEPYKGKGILYKGEIIKRKVGKSGK
Sbjct:    1 MGRIGKLPIKVPSNVQVEINQNNIEVSGPHGKLFRKISDVISVELSDNIIYVKKNENTRIANQLYGLSRTLINNMVVGVSQKFERTLELQGVGYRAQLKGKDLVLNLGYSHPILIAIPLGIEIKVEKNVGIIITGFDNELVGQLAATIRSKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
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BLAST of mRNA_S-ischiensis_contig110.2408.1 vs. uniprot
Match: A0A8F0FAR1_9PHAE (Ribosomal protein L6 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAR1_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 2.540e-86
Identity = 126/178 (70.79%), Postives = 152/178 (85.39%), Query Frame = 0 
Query:    1 MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTLSLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKGKELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
            MSRIGKLPIKVP +VEV I  Q+I +SGPHGKL RKISDL+ +   D  + ++K  D+RI+ QL+GL+RTLINNM+IGVSE+FE  L+L+GVGYRGQ+KGKELILNLGYSH +++ IP GI+++VE N  +I+ GFDKELVGQ AATIR+KRPPEPYKGKGILYKGEIIKRKVGKSGK
Sbjct:    1 MSRIGKLPIKVPSSVEVEINQQIIHISGPHGKLFRKISDLMSVEVNDGNIYVKKNKDTRIANQLYGLTRTLINNMVIGVSEKFELTLQLQGVGYRGQVKGKELILNLGYSHQVLIPIPVGIDIKVEKNVIIIITGFDKELVGQIAATIRSKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
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BLAST of mRNA_S-ischiensis_contig110.2408.1 vs. uniprot
Match: A0A8F0F7U1_9PHAE (Ribosomal protein L6 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7U1_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 8.460e-85
Identity = 121/178 (67.98%), Postives = 152/178 (85.39%), Query Frame = 0 
Query:    1 MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTLSLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKGKELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
            M+RIGKLPIKVP NV+V +  + I VSGPHGKL R  SDLI +  TDN + ++K  ++RI+ QL+GL+RTLINNM+IGVS++FER L+L+GVGYR Q++GK+L+LNLGYSHP+++ IPEGI+++VE N  +I+ GFDKELVGQ AATIR KRPPEPYKGKG+LYKGEIIKRKVGKSGK
Sbjct:    1 MARIGKLPIKVPSNVQVEVNKKNIKVSGPHGKLFRTFSDLISVELTDNIIYVKKMENTRIANQLYGLTRTLINNMVIGVSQKFERTLQLQGVGYRAQVQGKDLVLNLGYSHPVLISIPEGIDIKVEKNVGIIITGFDKELVGQLAATIRGKRPPEPYKGKGVLYKGEIIKRKVGKSGK 178
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BLAST of mRNA_S-ischiensis_contig110.2408.1 vs. uniprot
Match: D1J738_ECTSI (50S ribosomal protein L6, chloroplastic n=3 Tax=Ectocarpales TaxID=2877 RepID=D1J738_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 1.200e-84
Identity = 123/178 (69.10%), Postives = 150/178 (84.27%), Query Frame = 0 
Query:    1 MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTLSLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKGKELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
            M RIGKLPIKVP NV+V I  +++ VSGP GKL R ISDLI +   DN + + K  ++RI+ QL+GL+RTLINNM+IGVS++FER L+L+GVGYR QIKGK+LILNLGYSHP+++ IP GI+++VE N  +I+ GFDKEL+GQ AATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK
Sbjct:    1 MGRIGKLPIKVPSNVQVEINEKIVQVSGPQGKLFRTISDLISVELRDNKIYVSKNENTRIANQLYGLTRTLINNMVIGVSQKFERTLQLEGVGYRAQIKGKDLILNLGYSHPVLITIPLGIDIKVEKNIGIIITGFDKELIGQLAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
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BLAST of mRNA_S-ischiensis_contig110.2408.1 vs. uniprot
Match: A0A8F0JZ53_9PHAE (Ribosomal protein L6 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZ53_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 1.200e-84
Identity = 122/178 (68.54%), Postives = 151/178 (84.83%), Query Frame = 0 
Query:    1 MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTLSLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKGKELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
            M RIGKLPIKVP NV+V +   +I +SGPHGKL RKISDLI +  +DN + ++K  D+RI+ QL+GLSRTLINNM+IGVS++FER L+L+GVGYR Q+K K L+LNLGYSHPI+++IP GI++ VE N  +I+ GFDKE+VGQ AATIR+KRPPEPYKGKG+LYKGEIIKRKVGKSGK
Sbjct:    1 MVRIGKLPIKVPSNVQVEVNENIIQISGPHGKLFRKISDLISVKLSDNIIYVKKNEDTRIANQLYGLSRTLINNMVIGVSQKFERTLQLQGVGYRAQLKDKHLVLNLGYSHPILILIPVGIDIIVEKNVGIIITGFDKEVVGQLAATIRSKRPPEPYKGKGVLYKGEIIKRKVGKSGK 178
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BLAST of mRNA_S-ischiensis_contig110.2408.1 vs. uniprot
Match: A0A7T8JK47_SCYLO (50S ribosomal protein L6, chloroplastic n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8JK47_SCYLO)

HSP 1 Score: 254 bits (649), Expect = 4.880e-84
Identity = 122/178 (68.54%), Postives = 149/178 (83.71%), Query Frame = 0 
Query:    1 MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTLSLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKGKELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
            M RIGKLPIKVP NV+V I ++++ VSGP GKL R ISDLI +   DNT+ + K  D+RI+ QL+GL+RTLINNM+IGVS++FER L+L+GVGYR Q+  K+L+LNLGYSHP+++ IP GIE++VE N  +I+ GFDKELVGQ AATIR KRPPEPYKGKGILYKGEIIKRKVGKSGK
Sbjct:    1 MGRIGKLPIKVPSNVQVEINNKIVQVSGPQGKLLRTISDLISVELRDNTIYVTKNEDTRIANQLYGLTRTLINNMVIGVSQKFERTLQLEGVGYRAQLNNKDLVLNLGYSHPVLITIPLGIEIKVEKNVGIIITGFDKELVGQLAATIREKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
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BLAST of mRNA_S-ischiensis_contig110.2408.1 vs. uniprot
Match: A0A8F0F877_9PHAE (Ribosomal protein L6 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F877_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 1.330e-81
Identity = 118/178 (66.29%), Postives = 147/178 (82.58%), Query Frame = 0 
Query:    1 MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTLSLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKGKELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
            MSRIGKLPI +P NV+V I  + I +SGPHGKL +KISDLI +   +N + + K  ++RI+ QL+GL+RTLINNM+IGVS +FER L+L+GVGYR Q+ G +LILNLGYSHPI + IP+GI +++E N  +I+ GFDKEL+GQ A+TIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK
Sbjct:    1 MSRIGKLPIVIPANVQVEISERTISISGPHGKLFKKISDLISVQVNNNNIYVTKNNNTRIANQLYGLTRTLINNMVIGVSNKFERILQLQGVGYRAQVTGNDLILNLGYSHPIKITIPKGINIQIEKNGEIIISGFDKELIGQLASTIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
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BLAST of mRNA_S-ischiensis_contig110.2408.1 vs. uniprot
Match: A0A2I4Q301_9PHAE (50S ribosomal protein L6, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q301_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 2.680e-81
Identity = 119/178 (66.85%), Postives = 153/178 (85.96%), Query Frame = 0 
Query:    1 MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTLSLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKGKELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
            MSRIGKLPI +P NVEV ++ Q+I+++GPHGKL R+IS  I I   +N L+L+K+ +SR + QL+GLSRTLINNMIIGVS++F++ L L+GVGYR QI  K+L+LNLG+SHP++++IP+GIEV +E N  +I+ GFDKELVGQFAATI++KRPPEPYKGKGIL+KGEIIKRKVGKSGK
Sbjct:    1 MSRIGKLPIAIPENVEVEVKEQIINITGPHGKLVREISSTISIQLANNFLTLKKRDNSRFTNQLYGLSRTLINNMIIGVSKKFDKTLMLEGVGYRAQIVNKDLVLNLGFSHPVLLLIPDGIEVVLEKNGIIIIRGFDKELVGQFAATIKSKRPPEPYKGKGILFKGEIIKRKVGKSGK 178
[Close]
BLAST of mRNA_S-ischiensis_contig110.2408.1 vs. uniprot
Match: A0A8E5XRK3_9PHAE (50S ribosomal protein L6, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRK3_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 2.680e-81
Identity = 118/178 (66.29%), Postives = 149/178 (83.71%), Query Frame = 0 
Query:    1 MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTLSLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKGKELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRNKRPPEPYKGKGILYKGEIIKRKVGKSGK 178
            MSRIGKLPIKVP NVEV I  Q+I +SGPHG+LSRK+SDL+++   +  + ++K  +++ +RQL+GL+RTLINNM+IGVSE+FER L+L+GVGYR Q+K   LILNLGYSHPI++ +P GIE+++E N  + LLG+DKELVGQ AATIR KRPPEPYKGKGI+YKGEIIK K GKSGK
Sbjct:    1 MSRIGKLPIKVPENVEVQIDKQIIHISGPHGELSRKVSDLLIVELINANIQVKKLNNTKAARQLYGLTRTLINNMVIGVSEKFERILQLQGVGYRAQVKEANLILNLGYSHPILIPVPHGIEIKIEKNVLISLLGYDKELVGQLAATIRAKRPPEPYKGKGIIYKGEIIKLKPGKSGK 178
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig110.2408.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6ZPC2_9STRA7.850e-122100.0050S ribosomal protein L6, chloroplastic n=1 Tax=Sc... [more]
A0A0R6MG01_UNDPI2.540e-8670.2250S ribosomal protein L6, chloroplastic n=25 Tax=L... [more]
A0A8F0FAR1_9PHAE2.540e-8670.79Ribosomal protein L6 n=1 Tax=Desmarestia aculeata ... [more]
A0A8F0F7U1_9PHAE8.460e-8567.98Ribosomal protein L6 n=2 Tax=Laminariales TaxID=28... [more]
D1J738_ECTSI1.200e-8469.1050S ribosomal protein L6, chloroplastic n=3 Tax=Ec... [more]
A0A8F0JZ53_9PHAE1.200e-8468.54Ribosomal protein L6 n=1 Tax=Chorda asiatica TaxID... [more]
A0A7T8JK47_SCYLO4.880e-8468.5450S ribosomal protein L6, chloroplastic n=4 Tax=Sc... [more]
A0A8F0F877_9PHAE1.330e-8166.29Ribosomal protein L6 n=1 Tax=Protohalopteris sp. T... [more]
A0A2I4Q301_9PHAE2.680e-8166.8550S ribosomal protein L6, chloroplastic n=1 Tax=Di... [more]
A0A8E5XRK3_9PHAE2.680e-8166.2950S ribosomal protein L6, chloroplastic n=1 Tax=Is... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019906Ribosomal protein L6, bacterial-typePRINTSPR00059RIBOSOMALL6coord: 71..96
score: 52.85
coord: 99..115
score: 49.91
coord: 141..162
score: 70.23
IPR019906Ribosomal protein L6, bacterial-typeTIGRFAMTIGR03654TIGR03654coord: 2..176
e-value: 3.8E-68
score: 226.6
IPR019906Ribosomal protein L6, bacterial-typePANTHERPTHR11655:SF1454S RIBOSOMAL PROTEIN L6, MITOCHONDRIALcoord: 2..177
IPR019906Ribosomal protein L6, bacterial-typeHAMAPMF_01365_BRibosomal_L6_Bcoord: 1..176
score: 35.302
IPR000702Ribosomal protein L6PIRSFPIRSF002162RPL6p_RPL6a_RPL9e_RPL9ocoord: 1..177
e-value: 1.9E-48
score: 162.2
IPR000702Ribosomal protein L6PANTHERPTHR1165560S/50S RIBOSOMAL PROTEIN L6/L9coord: 2..177
IPR036789Ribosomal protein L6, alpha-beta domain superfamilyGENE3D3.90.930.12coord: 83..178
e-value: 8.5E-38
score: 130.4
IPR036789Ribosomal protein L6, alpha-beta domain superfamilyGENE3D3.90.930.12coord: 1..81
e-value: 8.3E-26
score: 92.1
IPR036789Ribosomal protein L6, alpha-beta domain superfamilySUPERFAMILY56053Ribosomal protein L6coord: 83..176
IPR036789Ribosomal protein L6, alpha-beta domain superfamilySUPERFAMILY56053Ribosomal protein L6coord: 1..81
IPR020040Ribosomal protein L6, alpha-beta domainPFAMPF00347Ribosomal_L6coord: 11..81
e-value: 7.0E-12
score: 45.8
coord: 91..164
e-value: 1.5E-16
score: 60.8
IPR002358Ribosomal protein L6, conserved sitePROSITEPS00525RIBOSOMAL_L6_1coord: 154..162

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig110contigS-ischiensis_contig110:72962..73498 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig110.2408.1mRNA_S-ischiensis_contig110.2408.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig110 72962..73498 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig110.2408.1 ID=prot_S-ischiensis_contig110.2408.1|Name=mRNA_S-ischiensis_contig110.2408.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=179bp
MSRIGKLPIKVPLNVEVTIQHQMIDVSGPHGKLSRKISDLILISYTDNTL
SLEKKIDSRISRQLHGLSRTLINNMIIGVSERFERCLELKGVGYRGQIKG
KELILNLGYSHPIIMVIPEGIEVRVENNTTVILLGFDKELVGQFAATIRN
KRPPEPYKGKGILYKGEIIKRKVGKSGK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019906Ribosomal_L6_bac-type
IPR000702Ribosomal_L6
IPR036789Ribosomal_L6_a/b-dom_sf
IPR020040Ribosomal_L6_a/b-dom
IPR002358Ribosomal_L6_CS