|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 614 |
| Cds size | 603 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815618.73622-UTR-S-ischiensis_contig11:3421111..3421121 | 1622815618.73622-UTR-S-ischiensis_contig11:3421111..3421121 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig11 3421112..3421121 + |
| 1695739807.8329203-UTR-S-ischiensis_contig11:3421111..3421121 | 1695739807.8329203-UTR-S-ischiensis_contig11:3421111..3421121 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig11 3421112..3421121 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815618.7459078-CDS-S-ischiensis_contig11:3421121..3421226 | 1622815618.7459078-CDS-S-ischiensis_contig11:3421121..3421226 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 3421122..3421226 + |
| 1695739807.8445904-CDS-S-ischiensis_contig11:3421121..3421226 | 1695739807.8445904-CDS-S-ischiensis_contig11:3421121..3421226 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 3421122..3421226 + |
| 1622815618.7550116-CDS-S-ischiensis_contig11:3422168..3422303 | 1622815618.7550116-CDS-S-ischiensis_contig11:3422168..3422303 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 3422169..3422303 + |
| 1695739807.8668385-CDS-S-ischiensis_contig11:3422168..3422303 | 1695739807.8668385-CDS-S-ischiensis_contig11:3422168..3422303 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 3422169..3422303 + |
| 1622815618.769946-CDS-S-ischiensis_contig11:3422968..3423203 | 1622815618.769946-CDS-S-ischiensis_contig11:3422968..3423203 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 3422969..3423203 + |
| 1695739807.8859167-CDS-S-ischiensis_contig11:3422968..3423203 | 1695739807.8859167-CDS-S-ischiensis_contig11:3422968..3423203 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 3422969..3423203 + |
| 1622815618.7837143-CDS-S-ischiensis_contig11:3424626..3424754 | 1622815618.7837143-CDS-S-ischiensis_contig11:3424626..3424754 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 3424627..3424754 + |
| 1695739807.896274-CDS-S-ischiensis_contig11:3424626..3424754 | 1695739807.896274-CDS-S-ischiensis_contig11:3424626..3424754 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 3424627..3424754 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig11.2367.1 >prot_S-ischiensis_contig11.2367.1 ID=prot_S-ischiensis_contig11.2367.1|Name=mRNA_S-ischiensis_contig11.2367.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=201bp
MSLSFLLTRAVCEEEALARLVFFLESSLDPTLLSRACQLCYLVAFHCGAT
AVPALLAGVGLHTGLCALLEGRREDLACVKVGSLETGLDVLLRLLEVLLA
RGGCVLGPPCSGGFEGPPVPGPRGPQGRGVFEGRTLLPPLLELMHPFDHP
RRTRENAFVALAGCLQDSSPARAGQALLGALAAGGDLKSPGVGTSEAGGG
G back to topmRNA from alignment at S-ischiensis_contig11:3421112..3424754+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig11.2367.1 ID=mRNA_S-ischiensis_contig11.2367.1|Name=mRNA_S-ischiensis_contig11.2367.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3643bp|location=Sequence derived from alignment at S-ischiensis_contig11:3421112..3424754+ (Schizocladia ischiensis KU_0333)
GGGGCATCAGATGAGCCTGTCCTTCTTGCTGACGAGGGCTGTGTGCGAGG
AGGAGGCGTTGGCGCGGCTGGTCTTCTTCCTGGAGAGCTCTCTGGACCCG
ACGCTGCTGTCGCGGGCGAGTACAGTAGACGTCGAGCGTTTGTTTGTTGT
TGTTGATTCGTATAAATTGTACCGAGGTACAATCACACGTGTGTAGGATT
GAATGTTCTCCTACTACAGTAGTTATCCCATGCAAGAGCCTTCAAGTACA
GTACAGTAGGTATTGTTCCATTGTACGAGTGCAGTAGCGCCCCGGGGGGA
CCGGGAGGGACTGGGACTCAAAAGGCCCCCGGGCTGGATGGGTGCATTAG
GTATGTCTTGTGTGCCTCTCTATGACACGGTCGGTTGCCCCGGTGGGGGA
AGAGTGAAGCGTCCGCTGGGCTAGTCTGGTCTAGCCTTGCCATGGACTTT
GGCCCTCCTCGGAGCCCTGAGCGCAGACGCGAGACAGCAGGTTGAGGTAC
ATAGAGTACGCACGGCCGTGGTGGGCGCGGGCTGCCGGCTTAACCCTTTC
ACCCCTGGGGTCCGTATAATCATGGGGTTTTATTTTGTACTTCGAAGTAA
GTCCAATTGAGCAGGGGCAACAGGGTTAAGTTGATAGCCCACGACTCCCT
GCGAACGCCCCCCGCTTGGGATATTAACCCTTTTACCCCTGAGGTCCATA
TAGTCGTGGGGTTTAGTGTGTAAGTCCACTTTAGGAGGTGTAAAGGGGTT
AACCCCAGCCGCACGCACGGGAGCCCGCATACACGTGCCTCGCTCTCTCC
CTCCCTGCCTCCCTCCCTTCCTCCCGTTCTCTCACACACATACTCCCTCC
CTACCTCCCTCCCTGCATCCCTCTGCCTGTCTCTCTCCCTCTCCCTCCCC
CCCCCCCACCCTCCCTTCCTCCCATTCTCTCACACTCTCCCTCCCTCCTT
CCCTCCCCCCCTCCCTCCCTGTGCCTGTCTCTCCCCCCCCCCCCCCCCCC
CCCTCTGTGTTTCTGCGGCCACTCGTACATGGCACCCCTGGCATCACCAT
GAGACAGGCGTGTCAGCTGTGCTATCTCGTGGCCTTTCACTGCGGTGCCA
CGGCTGTGCCGGCCTTGCTGGCGGGGGTTGGCCTGCACACAGGCCTGTGC
GCCCTGCTGGAGGGGAGGCGGGAGGATCTGGCCTGCGTGAAGGTGGGGAA
GTACACCTGCGGGGAAGGTACCGGGCCACCTTAACGCTTTTAACCCGGGG
GTCCATATAGTCATGGGGTTCTTGTGTGCAAGCGTAATTTAGCAGGGGTA
CACGGGTTAACCCGTTTACCCCGAGGATCCGTGCAGTCATAGGGTATTAG
TGTGTAAGTAAGACGACTTAGCAGGGGTAAAAGGGTTAACAGCACGGCAA
GGTCGCAATCGCCCACCGCAGTACAAGCCGCGCAAAGCCGGCCACATCCG
CGGGTTCTGGTCGGCCCATGGCTTTCGGCGATGGGAGGAAGTGCGCCCGT
CCGAGAGGGCGCGTGCCGACGTCGTCGGCTTGCTTGCGGGCATGGTGGTT
GGCGCGTCGTATCTTTTTACCCTTGAGTAGGTAAATTCGTCGGGCGGCAC
GTGACGTACCGGTCTGGACACTGTATATATACCATACGTTTATACGCATG
TGTGTATGTGTATGTACGCGTTGCCCACGAAATGGTAAGACACTGTATAT
ATACCATACGTTTATACGCATGTGTGTATGTGTATGTAAGCGTTGCCCAC
GAAATGGACTTACCAAGTACATCTCGCCGATACACACAAAACACACGAAC
TCGTGCGATGACAGACCCAATTCGCTGCGACAATGAATAAACGTCGTCTG
CTTGCAGGTGGGCAGCCTGGAGACCGGCCTGGACGTCCTCCTCCGCCTGC
TGGAGGTGCTGCTGGCCCGCGGTGGCTGCGTGCTGGGCCCGCCCTGTTCC
GGCGGGTTCGAGGGGCCCCCGGTGCCGGGCCCGCGGGGCCCGCAGGGCAG
GGGCGTGTTCGAGGGGCGGACCTTGTTGCCCCCGCTGCTTGAGCTCATGC
ACCCGTTCGACCACCCTCGGCGCACCAGAGAGAATGCCTTTGGTGAGTGG
GGTTGGGGGGTTTCGCGCTGAGGGATGGAGGGCATGTGGGGTGGGGCGGT
GCGTGTTTCATATAGAGCTCTACGCGAGTACTTGTACATTGCAACGAGGT
ACTCAATTGCACGTGTGTGAGATTGAGTGTGCATCGGTCGACGAGTCGTG
AGCGGTGCGGCGCGCATGCATGCATGGCCTTCAATGGGTGGTTGGTTGCC
AAGGCTGCCTTTGACTGTAGCACAGTGGCACGTACAGAGTGTTTTTGTTT
TCAACACGCCCGACTGCGTGGGTCGATTTTAGTATATATATATGTATATG
TGTGTGTGTAGGAACCAACGGTTGCTTATTAACTGCTGGACTATCATCCG
ACGGCTTTCTATTGGCACTCGTGTCTCTGCTGCGCGGCTCCTTTCCGTGC
CCGTGCAAGTACTGTATGTATGTCGAAGCTTTCGAGTTTAGAGTAAAGGT
ACAGTTGATGTTGCTCGGAAGCGCTTCCCATGGCCCCCGGGGGTTGACAC
GGTACAGTACTACCGAATACTGTGCAGTAGTGCGCGTTGCAACTTTTAAA
GGATGGCAAACAACGTGTCGGCAGATTTCTCACTGGACGTAGCTCGTGGA
TCCACGCATCACGATGATATTTAGTACTATTTCCGGAAGTACGTAGTATC
TAGTAGGCGGGTTCCCGCCCGGCGACCCGGAGTACTCGAGTATGCTTCGA
AGTTTTTCAAGTACTTCCTAGTTGAAGTTGCTGACCATCAGGCTAGGGCA
GTCTGAGAGGTCCTGACTGCCAGTGGGGCGCTGTAGGTACAGGAAGTAGT
TGCGAAACAAGCGGGTCGACTGTACTGTATTACTGTAGCAGGAACAACGC
ACGAGGTGCAGGCCACGCAACTAAAGACCTCGCCAGTAGCCCTTCCTTAG
ATGTAGGCAAATATGCCACGTGTTGGTTGGTGGATACACCAGGTTCCATG
AGTATATACTCGTATATGTACTCACGTGGTGCTTGCCGTAGTCCCGAGAC
CATTGACCACGCGCCTCGTTCGAGACGGAGCAGTATATACATTCCATATA
TATGTACTTCGAAGTACCACTATACTCGGAAGTGCGTACTTGAGTGTTGT
GCTCGCCGTAGTCCCGAGACCATTGCCCACCCGCCGTTGACGGCGAAGCA
ACCAGGAGTGCCCAATATACTTCACTACAATACTCGAGTACACATACTTG
GGGCTACGTACAGTACTGGACAGTACAACTGTACAGCACTAATGCTTCCA
ACGAAACACAGTCATCTACAACGCTGACAGGTCAACCCCGACCCCCCCCT
CCCCCCCCCACCTCTTCCCTCCGCCCGCCCCCCCCCGCCCCCAACTACCT
CCCTCCCTGCCTTGCTCTCCCCCCCCCCTGCCCCAACCGGGACACGCCTT
CCAATCCACTGCCAGTGGCCCTGGCAGGCTGCCTCCAGGATTCCTCGCCG
GCTAGGGCGGGACAGGCTTTGCTGGGGGCCCTCGCAGCCGGCGGCGATCT
TAAATCGCCCGGTGTCGGGACCTCGGAGGCGGGCGGCGGCGGC back to topCoding sequence (CDS) from alignment at S-ischiensis_contig11:3421112..3424754+ >mRNA_S-ischiensis_contig11.2367.1 ID=mRNA_S-ischiensis_contig11.2367.1|Name=mRNA_S-ischiensis_contig11.2367.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1206bp|location=Sequence derived from alignment at S-ischiensis_contig11:3421112..3424754+ (Schizocladia ischiensis KU_0333)
ATGAGCCTGTCCTTCTTGCTGACGAGGGCTGTGTGCGAGGAGGAGGCGTT
GGCGCGGCTGGTCTTCTTCCTGGAGAGCTCTCTGGACCCGACGCTGCTGT
CGCGGATGAGCCTGTCCTTCTTGCTGACGAGGGCTGTGTGCGAGGAGGAG
GCGTTGGCGCGGCTGGTCTTCTTCCTGGAGAGCTCTCTGGACCCGACGCT
GCTGTCGCGGGCGTGTCAGCTGTGCTATCTCGTGGCCTTTCACTGCGGTG
CCACGGCTGTGCCGGCCTTGCTGGCGGGGGTTGGCCTGCACACAGGCCTG
TGCGCCCTGCTGGAGGGGAGGCGGGAGGATCTGGCCTGCGTGAAGGCGTG
TCAGCTGTGCTATCTCGTGGCCTTTCACTGCGGTGCCACGGCTGTGCCGG
CCTTGCTGGCGGGGGTTGGCCTGCACACAGGCCTGTGCGCCCTGCTGGAG
GGGAGGCGGGAGGATCTGGCCTGCGTGAAGGTGGGCAGCCTGGAGACCGG
CCTGGACGTCCTCCTCCGCCTGCTGGAGGTGCTGCTGGCCCGCGGTGGCT
GCGTGCTGGGCCCGCCCTGTTCCGGCGGGTTCGAGGGGCCCCCGGTGCCG
GGCCCGCGGGGCCCGCAGGGCAGGGGCGTGTTCGAGGGGCGGACCTTGTT
GCCCCCGCTGCTTGAGCTCATGCACCCGTTCGACCACCCTCGGCGCACCA
GAGAGAATGCCTTTGGTGGGCAGCCTGGAGACCGGCCTGGACGTCCTCCT
CCGCCTGCTGGAGGTGCTGCTGGCCCGCGGTGGCTGCGTGCTGGGCCCGC
CCTGTTCCGGCGGGTTCGAGGGGCCCCCGGTGCCGGGCCCGCGGGGCCCG
CAGGGCAGGGGCGTGTTCGAGGGGCGGACCTTGTTGCCCCCGCTGCTTGA
GCTCATGCACCCGTTCGACCACCCTCGGCGCACCAGAGAGAATGCCTTTG
TGGCCCTGGCAGGCTGCCTCCAGGATTCCTCGCCGGCTAGGGCGGGACAG
GCTTTGCTGGGGGCCCTCGCAGCCGGCGGCGATCTTAAATCGCCCGGTGT
CGGGACCTCGGAGGCGGGCGGCGGCGGCTGGCCCTGGCAGGCTGCCTCCA
GGATTCCTCGCCGGCTAGGGCGGGACAGGCTTTGCTGGGGGCCCTCGCAG
CCGGCGGCGATCTTAAATCGCCCGGTGTCGGGACCTCGGAGGCGGGCGGC
GGCGGC back to top
|