mRNA_S-ischiensis_contig11.2339.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2339.1
Unique NamemRNA_S-ischiensis_contig11.2339.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig11.2339.1 vs. uniprot
Match: D8LQG8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQG8_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 1.310e-44
Identity = 65/91 (71.43%), Postives = 80/91 (87.91%), Query Frame = 1 
Query:    1 VSINRERGDAWQLPEDLLDRCELQVLCPDLDAESPGVWLADELETCAFAEISELTKVKAEFNQALDKWKRWTLLDDLSEGCGARDAEWDYD 273
            VSIN+ R DAW+LPED+LD+ ELQVLCPDLD+E  GVW+ADELETCAFA++ E+  +K+ FN A+DKWKRWT+ D+LSEGCGARDAEW+YD
Sbjct:  143 VSINKLRNDAWKLPEDILDKAELQVLCPDLDSEEEGVWMADELETCAFAKLGEMKVLKSSFNGAMDKWKRWTISDELSEGCGARDAEWEYD 233
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQG8_ECTSI1.310e-4471.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:3164956..3168244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_005590.1
Hectar predicted targeting categoryother localisation
Exons3
Model size417
Cds size288
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2339.1prot_S-ischiensis_contig11.2339.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 3165085..3168244 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.695332-UTR-S-ischiensis_contig11:3164955..31650841622815616.695332-UTR-S-ischiensis_contig11:3164955..3165084Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 3164956..3165084 -
1695739806.4542096-UTR-S-ischiensis_contig11:3164955..31650841695739806.4542096-UTR-S-ischiensis_contig11:3164955..3165084Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 3164956..3165084 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.7062738-CDS-S-ischiensis_contig11:3165084..31652041622815616.7062738-CDS-S-ischiensis_contig11:3165084..3165204Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3165085..3165204 -
1695739806.4639812-CDS-S-ischiensis_contig11:3165084..31652041695739806.4639812-CDS-S-ischiensis_contig11:3165084..3165204Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3165085..3165204 -
1622815616.7190275-CDS-S-ischiensis_contig11:3166493..31665891622815616.7190275-CDS-S-ischiensis_contig11:3166493..3166589Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3166494..3166589 -
1695739806.4732225-CDS-S-ischiensis_contig11:3166493..31665891695739806.4732225-CDS-S-ischiensis_contig11:3166493..3166589Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3166494..3166589 -
1622815616.731925-CDS-S-ischiensis_contig11:3168172..31682441622815616.731925-CDS-S-ischiensis_contig11:3168172..3168244Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3168173..3168244 -
1695739806.4826963-CDS-S-ischiensis_contig11:3168172..31682441695739806.4826963-CDS-S-ischiensis_contig11:3168172..3168244Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3168173..3168244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2339.1

>prot_S-ischiensis_contig11.2339.1 ID=prot_S-ischiensis_contig11.2339.1|Name=mRNA_S-ischiensis_contig11.2339.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=96bp
VSINRERGDAWQLPEDLLDRCELQVLCPDLDAESPGVWLADELETCAFAE
ISELTKVKAEFNQALDKWKRWTLLDDLSEGCGARDAEWDYDDNVL*
back to top

mRNA from alignment at S-ischiensis_contig11:3164956..3168244-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2339.1 ID=mRNA_S-ischiensis_contig11.2339.1|Name=mRNA_S-ischiensis_contig11.2339.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3289bp|location=Sequence derived from alignment at S-ischiensis_contig11:3164956..3168244- (Schizocladia ischiensis KU_0333)
GTGAGCATCAACCGGGAGAGGGGGGACGCCTGGCAGCTGCCGGAGGACCT
TCTCGACCGCTGCGAGCTGCAGGTGATGCCACATCGCGGACTGTACTGCG
ACGTTTTTTGTTTCGTTCTTTTGTGTGGAAAGAAAATAAGCGCGTGGAAA
GTAGAGGTGAGCCTACTTGTGCGAGTTCCGGGCCCCAACACGGAAGCCCG
TCATTCACCCGCCTTCACTCGCAGGGCAAATACTTTGAACTAGTAGAAAG
AAACCAAGGGGCAAGGGGAAGGGGGCAGTTGTTTTGTTCTTGTGTTACGT
CACTCAGGCGACGGTTGATCCTCCTGCACCACCGCAGGGCAAGAAAATGT
GTACTCATACAGTAGAGTACTTCTACTGTACGCAGTGCTTCCTTCGGAGG
CGGTGTGTACTTCAAGCGTACGAGTAAATACTTTGAGGTCAGGGTGGCTC
CGCCGGGCGCTGTTGCTCCGTCTCGTTTGAGGTTGCGTGGCCCATGGCCT
CGGGACTACCTAAGGCGCACTCGACCACATGCTTCATGTACTTAGCGCAG
TTGTCCACACAGTCTTCTTCGAAGAGCTCGCTATTCCAAAAGCTTCAAAG
GAATCCGCTTGACCGTGACAAGCAGCAACACACTGTGTGTGTTGCTGTAC
GCTAGGAGACCCCATTGCGGCGGATCGCGATTTGCCCCGCGTCGCCGCGC
GCCCCAAAAGCCGTTTTGCGGGGGCCCCGGCTCCCGCCGATCGCCGGTCA
GGTTTTGCCCCGCGCAGTGACGTAGAGAATCACGCCAAAACTCCGCGTCC
TCGGCTCATGGTAGGTCTGGCAATCACACCAAACCCACCTATGGAGTGAG
GGTTCCCTCGCCGAGACTTGCGGACATCGACTCTTCCCCTGACCACAATG
AGCACGCCCCCAGTATGTTATCCGTTCCGGCATGAGTAGGGTAGCGCCAC
CGCAGCCGAGAGGAGAGACAAGGACGATGCTTCTGGGCGTTTTCCTCGTG
CCTAGGCCCAGCCGAACCGGCATACTGCAGCACCGGGCTTTCTTTTTGTG
ACTCCACCCTGTGCTGCCCCTCTTGCGATAAATGTGGGTGATGTGTTTGG
CTGGTGAGCGCCAGTCTCCCCCCCCCTGGTGGGTATGCAACCTCCCCACT
AGAAGTACTTCGAACTACTATAGTGGCCTGTGCAGTCAGCGAGTGTACAG
TAGTCAATCGTCGCCGCTCACCCAAAAAAGCACGCGCGCAGAAATCGCGG
CGATGCCGCTGTTCCTCTTCTTGTCTTGCTGCAGTTCCCCAGCATACGAT
ACGCTTCGACGTATGCGGGAAGTACTTGCGAGCTCACTCACAAGAACCTT
CGAAGTACCGTGCTGCCTACGCACTGTGCAGTAGTGCCTGAATTGCAGAA
TTGATGAAATCAATTCTCACTGCTCGTAGCTCACTTTTGCTCCTCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCCCCTCCCCCAGGAAGGTGTACACGCACAGTAAAATCCCTACGCAATAA
GTTACGTGCACACCTGGGGCACCGGCAACGGGGTCAATACTTCGAAGCAC
TAAAGAGATCCCACCTCCCCCCCAAAAAAAACACCGCGGGGGGGCGGGTC
ATCAGGTCCTCTGCCCTGACCTGGACGCGGAGTCGCCCGGGGTGTGGCTG
GCAGACGAGCTCGAGACCTGCGCCTTTGCAGAGATCTCGGAGCTCACTAA
GGTGAGGCGGTGATTCCTATAGATTGTAGCGAGGTGCAACCGCACTTACA
ATCGCACTAAGGCGAGGCCCGGGCCCGGTTCCAGTGCCTCCGGCCGTGGG
CGGCGAAGGGCTTCTGGTGATGTGGCTCAGGTTTTTTCATGACGATAAAC
AAGCGAGCGGGAAAAAAGAGGTGGTCCTACATACGCGAGTTCAGGGCCCC
ACCCCCGAAAGCCCTTCCTTTCACCCGCCTTCACTCGCAGGGCAGATAGA
GTGGAAAATAAAGAAAAACAAGGGAGGGACAGGGCGGGAAGGCAGTCTCA
GTTTTGGGGGACGGGGCTTGAACCAGGTATTCTGGGCGAGGCACTCTACA
GTCCCACGTGTGTGGAGCTGAGTTCGGGGCGGGGGTGCTTCACTGTCAAG
TGCTGCAAGTGCTCTTCCTCACCCCCCTTGCATGTTCCTGTCAGTACATC
TGTATCCATGATGTTTAAAACGTCACACATGGCCTCTCGTCCCCTGCACT
ATACAAGACTCTTTACAGCCCCTTGTAGCCCTCAGTCTACGAGATATCTC
TAGCTCTCCTCACTACACCTTAGGTATTTCTGCCATAGTCAGCACAGGCC
CCCAGGCCTCACTGCCCTCTCTATTTGCGTGAGACGAGGTACTGGAACAG
TTTCCTCCCCTGGCGAGCTAAGGAAGGGCCACTGTTGCGGTCCCTAGTGA
CGTGGTGGGCACCTCGCCTCCGGCAGTGTGTTGTCCTGCTCATACTTGGT
GTGGTTCCTACAGTAGTACAATACCTACTTTTGTGTGGAAAGAAAGAGGC
GAATGGGATATAGGGGTGACCTATAGGGGTGACCCTACTTTCGCGGGTGC
CGCGCATACTGCACTGCTACTGTACAGGTACCCGGGAGGTGCATGGTACG
ATGTGTTGTACGTCCAAGCATTCCGGTCTTGACGTTCAATTCGCCACGAT
ACATTGCCCCGAGCGCAGCAGTACCGCACATAGGACAGTATTAACGTAGT
ATACATATGTGCTCACGTGGTGCTTGCCGTAGTCCCGAGACCATTGACCA
CGCGCCTCGGTCGAGACAGAGGAGGATGGTACAGTAGTAAATACTGTAGT
ACTCGTAGTAGGTACTCCGGGAACACGTGGACCCGGAGTGCTCTCTAGCT
ACTGTTGAGGTCTTAGTGACGTGGCCTGCACCTCGCCCTGTGTTGTTCCT
GTTAGTACTTGCGATGTGCACGCCGAGCAACAATCCGCGGCAACGCAACA
TTAAAACTTCCCCACGTCCCGTCGGGCCGTCTCTGGCCAGGTGAAGGCCG
AGTTCAACCAGGCGCTGGACAAGTGGAAGCGCTGGACCCTCCTGGATGAC
CTCAGCGAGGGCTGCGGGGCACGGGACGCGGAGTGGGACTACGACGACAA
TGTCCTCTAAGCTCGAGCTTCAAGTTTATTGCAGCCCTCGAATTGAGTTA
GTTCATGATCGCGACAGTACGCTAAACTGCTTGTATACTACTGTACTCGT
ACGTTTCCATGACGGATCAGCCTGAACGTGTCAGGGATA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig11:3164956..3168244-

>mRNA_S-ischiensis_contig11.2339.1 ID=mRNA_S-ischiensis_contig11.2339.1|Name=mRNA_S-ischiensis_contig11.2339.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=576bp|location=Sequence derived from alignment at S-ischiensis_contig11:3164956..3168244- (Schizocladia ischiensis KU_0333)
GTGAGCATCAACCGGGAGAGGGGGGACGCCTGGCAGCTGCCGGAGGACCT
TCTCGACCGCTGCGAGCTGCAGGTGAGCATCAACCGGGAGAGGGGGGACG
CCTGGCAGCTGCCGGAGGACCTTCTCGACCGCTGCGAGCTGCAGGTCCTC
TGCCCTGACCTGGACGCGGAGTCGCCCGGGGTGTGGCTGGCAGACGAGCT
CGAGACCTGCGCCTTTGCAGAGATCTCGGAGCTCACTAAGGTCCTCTGCC
CTGACCTGGACGCGGAGTCGCCCGGGGTGTGGCTGGCAGACGAGCTCGAG
ACCTGCGCCTTTGCAGAGATCTCGGAGCTCACTAAGGTGAAGGCCGAGTT
CAACCAGGCGCTGGACAAGTGGAAGCGCTGGACCCTCCTGGATGACCTCA
GCGAGGGCTGCGGGGCACGGGACGCGGAGTGGGACTACGACGACAATGTC
CTCTAAGTGAAGGCCGAGTTCAACCAGGCGCTGGACAAGTGGAAGCGCTG
GACCCTCCTGGATGACCTCAGCGAGGGCTGCGGGGCACGGGACGCGGAGT
GGGACTACGACGACAATGTCCTCTAA
back to top