mRNA_S-ischiensis_contig1.1197.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1197.1
Unique NamemRNA_S-ischiensis_contig1.1197.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:8105803..8106238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size320
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815361.635381-CDS-S-ischiensis_contig1:8105804..81058331622815361.635381-CDS-S-ischiensis_contig1:8105804..8105833Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8105805..8105833 -
1695739660.1701736-CDS-S-ischiensis_contig1:8105804..81058331695739660.1701736-CDS-S-ischiensis_contig1:8105804..8105833Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8105805..8105833 -
1622815361.649697-CDS-S-ischiensis_contig1:8105949..81062381622815361.649697-CDS-S-ischiensis_contig1:8105949..8106238Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8105950..8106238 -
1695739660.1800938-CDS-S-ischiensis_contig1:8105949..81062381695739660.1800938-CDS-S-ischiensis_contig1:8105949..8106238Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8105950..8106238 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1197.1prot_S-ischiensis_contig1.1197.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 8105805..8106238 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1197.1

>prot_S-ischiensis_contig1.1197.1 ID=prot_S-ischiensis_contig1.1197.1|Name=mRNA_S-ischiensis_contig1.1197.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=106bp
GVACSGVLRVGHLWTNDHGLWGENTGDGIVLHPCASMSSNLGASSTLGGE
CIRAPVQCISPGSASNSKATQAVGLAPGQRARSWAGEWPVGAAGWPATFR
GHVMER
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mRNA from alignment at S-ischiensis_contig1:8105803..8106238-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1197.1 ID=mRNA_S-ischiensis_contig1.1197.1|Name=mRNA_S-ischiensis_contig1.1197.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=436bp|location=Sequence derived from alignment at S-ischiensis_contig1:8105803..8106238- (Schizocladia ischiensis KU_0333)
GGCGTGGCGTGCTCGGGCGTGCTGCGTGTCGGACACCTGTGGACGAATGA
CCACGGTCTCTGGGGGGAAAACACCGGAGATGGAATCGTGCTGCATCCGT
GTGCGTCGATGTCGTCGAACCTGGGCGCGAGCAGCACTCTTGGCGGCGAG
TGCATTCGTGCCCCAGTGCAATGCATTTCGCCAGGCAGCGCCTCGAACAG
CAAGGCTACACAGGCCGTCGGCTTGGCCCCCGGTCAGCGCGCGCGGTCTT
GGGCGGGGGAATGGCCAGTCGGGGCTGCTGGTTGGCCGGGTGGGTGAAGA
GCGGCAGTGTTGGTCAAACTCTACTTGCTACTACTGTGCAGCTGTACACT
ATTCCGCAGGCTTACGCCCGTGCATGCTGCCCCTCGCCACCCACTCCCCC
CACAGCCACGTTTCGGGGACACGTCATGGAGCGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:8105803..8106238-

>mRNA_S-ischiensis_contig1.1197.1 ID=mRNA_S-ischiensis_contig1.1197.1|Name=mRNA_S-ischiensis_contig1.1197.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=636bp|location=Sequence derived from alignment at S-ischiensis_contig1:8105803..8106238- (Schizocladia ischiensis KU_0333)
GGCGTGGCGTGCTCGGGCGTGCTGCGTGTCGGACACCTGTGGACGAATGA
CCACGGTCTCTGGGGGGAAAACACCGGAGATGGAATCGTGCTGCATCCGT
GTGCGTCGATGTCGTCGAACCTGGGCGCGAGCAGCACTCTTGGCGGCGAG
TGCATTCGTGCCCCAGTGCAATGCATTTCGCCAGGCAGCGCCTCGAACAG
CAAGGCTACACAGGCCGTCGGCTTGGCCCCCGGTCAGCGCGCGCGGTCTT
GGGCGGGGGAATGGCCAGTCGGGGCTGCTGGTTGGCCGGGGCGTGGCGTG
CTCGGGCGTGCTGCGTGTCGGACACCTGTGGACGAATGACCACGGTCTCT
GGGGGGAAAACACCGGAGATGGAATCGTGCTGCATCCGTGTGCGTCGATG
TCGTCGAACCTGGGCGCGAGCAGCACTCTTGGCGGCGAGTGCATTCGTGC
CCCAGTGCAATGCATTTCGCCAGGCAGCGCCTCGAACAGCAAGGCTACAC
AGGCCGTCGGCTTGGCCCCCGGTCAGCGCGCGCGGTCTTGGGCGGGGGAA
TGGCCAGTCGGGGCTGCTGGTTGGCCGGCCACGTTTCGGGGACACGTCAT
GGAGCGGCCACGTTTCGGGGACACGTCATGGAGCGG
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