prot_S-ischiensis_contig11.2259.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig11.2259.1
Unique Nameprot_S-ischiensis_contig11.2259.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length487
Homology
BLAST of mRNA_S-ischiensis_contig11.2259.1 vs. uniprot
Match: D8LTC0_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTC0_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 1.740e-76
Identity = 152/354 (42.94%), Postives = 205/354 (57.91%), Query Frame = 0
Query:   85 KGRRETFGVLLRRRTTLAMLAVICTVALVIVLILQETIDRYRPGSEAT----------CYMFQEWKFLMFFCALQATIFGALARYLANVDDLLNISNELRVNFAGYFLLIAPYFGVLLHHYYRARGEDFPTAAQFLVAVMVLLSMANTMFVSIGGLDCCMLRRSKRHRR----GGSDV----------TTSTVAASSAPASPTSPRAVRGGVRATASTMLQLQYGTVSAVLSNPDLAEAFGRLAERFLCVEAHEFLLVVRQYRSSETSREGPAVQHLIFLDIMREFVAANSEREVDISGDLRANMMKYMDYAEFSPLSERLRRGIFVAAEHEVEHVLALNVLPYFHNSFEFTEI 414
            + R+E FGV LR+RTTLAM A +CTVA  I++ L + +  Y  G   T          CYM  EWKFL+ FC LQ  IFG L   L NVDDLLNIS+ELRVNF  Y L   PYF + LH+ YR   E+ PT+ Q L++ MV+L+M NTM+ S+GGL+         +R     GG D           +  T +A+S  A P      R  V+       +  Y  V +++ N ++A AFG LA RFLC E++ FL+ + +YR+      GP +QHL+F+D+ + FV  NSE+E+ IS D R  +++YM Y EFSPL E  R  IF+ AE EV  +L LN++  FHNS  FTE+
Sbjct:   16 RARQEKFGVFLRKRTTLAMEAFLCTVAACILVALSQVLPPYSRGPTVTDAGAGGXXGACYMMMEWKFLLPFCVLQTVIFGVLGCKLRNVDDLLNISSELRVNFMLYLLFCLPYFVLTLHYRYRT-DEEVPTSLQLLISAMVVLAMVNTMWASVGGLEDAFDMMGWDYRSAFFYGGGDEEGETSTWGPSSHGTGSAASVVAEPHRGTTTRSDVK-----RWRQHYSDVPSIMRNANMAAAFGALANRFLCAESYNFLVSIAEYRAFTGMGAGPGLQHLLFMDLCKAFVMVNSEQEITISHDQRQQILRYMAYREFSPLRESERADIFLDAEREVCQMLQLNLVSTFHNSTAFTEV 363          
BLAST of mRNA_S-ischiensis_contig11.2259.1 vs. uniprot
Match: A0A835ZCS8_9STRA (RGS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCS8_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.280e-22
Identity = 111/417 (26.62%), Postives = 179/417 (42.93%), Query Frame = 0
Query:   10 RAHELRIHAKSPTLATFPGIYAIIVGGVLIPLQELLQLEGIRYPCRLNLWQTWFFLPLWGAPFALRSLRVIIASRKGRRETFGVLLRRRTTLAMLAVICTVALVIVLILQET-----IDRYRPGSEATCYMFQEWKFL--MFFCALQATIFGALARYLANVDDLLNISNELRVNFAGYFLLIAPYFGVLLHHYYRARGEDFPTAAQFLVAVMVLLSMANTMFVS--------IGGLDCCMLRRSKRHRRGGSDVTTSTVAASSAPASPTSPRAVRGGVRATASTMLQLQYGTVSAVLSNPDLAEAFGRLAERFLCVEAHEFLLVVRQYRSSETSREGPAVQHLIFLDIMREFVAANSEREVDISGDLRANMMKYMDYAEFSPLSERLRRGIFVAAEHEVEHVLALNVLPYFHNSFEF 411
            R  E+ + A+SP LA   G  A +   +++ +QE  QL G  +PC + LW +     +      LR+ RVII + +  R+ F  LL     +A+      +   I  +LQ T      DRY       C +++ W     +F C +   I    A Y   V D L ++ E+  +       + PY+  L    +     D  T  QF +  +    M +T   S        +    C  L +         +   + +  + AP +     A  G  +       + ++ +  A+L +P LA A+ +  ++ LC E+  FL  VRQY S      GP  Q+ +F  I+ +F+ +NS  EV+IS  LR  ++K  D   F  L+E  R G+F A   EV  +L  N+L  FHN+  F
Sbjct:   10 RRGEMLVRARSPALALCQGA-ACMAFFLIVGVQECFQLAGAHFPCSIMLWASTVISGVSLYSLLLRAARVIIVTSEEHRQKFMFLLSPANQVAVCMGGTLLLCGIPAVLQGTHAALHTDRY-------CMIYRPWWLYVGLFVCYIIVAIVTVRALYA--VIDTLGLAMEVSRSVGALIFFLGPYWLFLALSDFNIVTID--TRLQFCIWGLDYYLMFDTFIASRRYWGSEGLASQQCSTLWQRLCGNANVKNKKYAVLPTTHAPGA----AAAAGKAQQAPPDAARERWASSLAMLESPPLAAAYAQYVQQALCYESFAFLSNVRQYESDGYDEIGP--QYAVFDRIVADFICSNSRYEVNISNQLRQQVLKVRDRYVFCALTEEARSGVFKAPAAEVAALLDQNILRSFHNTDAF 408          
BLAST of mRNA_S-ischiensis_contig11.2259.1 vs. uniprot
Match: A0A6H5JQM7_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM7_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 9.910e-16
Identity = 52/104 (50.00%), Postives = 61/104 (58.65%), Query Frame = 0
Query:  103 MLAVICTVALVIVLILQETIDRYRPGSEAT----------CYMFQEWKFLMFFCALQATIFGALARYLANVDDLLNISNELRVNFAGYFLLIAPYFGVLLHHYY 196
            M A +CTVA  I++ L + +  Y  G   T          CYM  EWKFL+ FC LQ  IFG L   LANVDDLLNIS+ELRVNF  Y L   PYF + LH+ Y
Sbjct:    1 MEAFLCTVAACILVALSQMLPPYSRGPTVTDAGAGGXXGACYMMMEWKFLLPFCVLQTVIFGVLGCKLANVDDLLNISSELRVNFMLYLLFCFPYFVLTLHYRY 104          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2259.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LTC0_ECTSI1.740e-7642.94RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZCS8_9STRA2.280e-2226.62RGS domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6H5JQM7_9PHAE9.910e-1650.00RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016137RGS domainSMARTSM00315RGS_3coord: 286..415
e-value: 0.0036
score: 21.5
IPR016137RGS domainPFAMPF00615RGScoord: 288..412
e-value: 6.0E-8
score: 33.0
IPR016137RGS domainPROSITEPS50132RGScoord: 286..415
score: 10.802
NoneNo IPR availableGENE3D1.20.58.1850coord: 274..417
e-value: 8.3E-14
score: 53.4
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 139..161
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 234..486
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 101..119
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 197..207
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 173..196
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 208..233
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 42..60
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 162..172
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 82..100
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 61..81
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 120..138
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..41
NoneNo IPR availableTMHMMTMhelixcoord: 57..79
NoneNo IPR availableTMHMMTMhelixcoord: 141..163
NoneNo IPR availableTMHMMTMhelixcoord: 208..230
NoneNo IPR availableTMHMMTMhelixcoord: 100..122
NoneNo IPR availableTMHMMTMhelixcoord: 20..42
NoneNo IPR availableTMHMMTMhelixcoord: 176..198
IPR036305RGS domain superfamilySUPERFAMILY48097Regulator of G-protein signaling, RGScoord: 288..412

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:2311206..2316638 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2259.1mRNA_S-ischiensis_contig11.2259.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig11 2309617..2316990 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig11.2259.1 ID=prot_S-ischiensis_contig11.2259.1|Name=mRNA_S-ischiensis_contig11.2259.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=487bp
MCLYGIHESRAHELRIHAKSPTLATFPGIYAIIVGGVLIPLQELLQLEGI
RYPCRLNLWQTWFFLPLWGAPFALRSLRVIIASRKGRRETFGVLLRRRTT
LAMLAVICTVALVIVLILQETIDRYRPGSEATCYMFQEWKFLMFFCALQA
TIFGALARYLANVDDLLNISNELRVNFAGYFLLIAPYFGVLLHHYYRARG
EDFPTAAQFLVAVMVLLSMANTMFVSIGGLDCCMLRRSKRHRRGGSDVTT
STVAASSAPASPTSPRAVRGGVRATASTMLQLQYGTVSAVLSNPDLAEAF
GRLAERFLCVEAHEFLLVVRQYRSSETSREGPAVQHLIFLDIMREFVAAN
SEREVDISGDLRANMMKYMDYAEFSPLSERLRRGIFVAAEHEVEHVLALN
VLPYFHNSFEFTEISAVTSQGGAPSTTLSEGPSQGQASAEDPESSSPGPG
HPGRVWGTAAPLLTWPMDGTTGTSDAELVTLPRPGP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016137RGS
IPR036305RGS_sf