mRNA_S-ischiensis_contig1.1174.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1174.1
Unique NamemRNA_S-ischiensis_contig1.1174.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7947844..7948118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815361.243209-CDS-S-ischiensis_contig1:7947843..79479051622815361.243209-CDS-S-ischiensis_contig1:7947843..7947905Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7947844..7947905 -
1695739659.9203138-CDS-S-ischiensis_contig1:7947843..79479051695739659.9203138-CDS-S-ischiensis_contig1:7947843..7947905Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7947844..7947905 -
1622815361.2591846-CDS-S-ischiensis_contig1:7947964..79481181622815361.2591846-CDS-S-ischiensis_contig1:7947964..7948118Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7947965..7948118 -
1695739659.9328604-CDS-S-ischiensis_contig1:7947964..79481181695739659.9328604-CDS-S-ischiensis_contig1:7947964..7948118Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7947965..7948118 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1174.1prot_S-ischiensis_contig1.1174.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7947844..7948118 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1174.1

>prot_S-ischiensis_contig1.1174.1 ID=prot_S-ischiensis_contig1.1174.1|Name=mRNA_S-ischiensis_contig1.1174.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=72bp
GRRALPSCWRQGCGRRQAHGRWPPHGSSCRGGRADRHGHGCGRGGRGDLG
TGLAQRSPPQRRHGGRPLGPH*
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mRNA from alignment at S-ischiensis_contig1:7947844..7948118-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1174.1 ID=mRNA_S-ischiensis_contig1.1174.1|Name=mRNA_S-ischiensis_contig1.1174.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=275bp|location=Sequence derived from alignment at S-ischiensis_contig1:7947844..7948118- (Schizocladia ischiensis KU_0333)
GGCAGGCGAGCGCTGCCGAGCTGCTGGCGACAGGGTTGCGGCCGGCGCCA
AGCCCATGGGCGATGGCCTCCCCATGGCAGCTCCTGCCGGGGGGGGCGAG
CGGACAGGCATGGGCACGGCTGCGGCCGGGGTGGAAGGGGCGACCTCGGC
ACAGGCACCAGCGGCGGCGGCGGCGGCGGCGGCGGCAGTGGGGGCCACGG
CGCCGGGGGGCAGGGCTTGCTCAGCGGAGTCCGCCGCAGCGGAGGCACGG
GGGTCGACCCCTCGGCCCCCACTAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7947844..7948118-

>mRNA_S-ischiensis_contig1.1174.1 ID=mRNA_S-ischiensis_contig1.1174.1|Name=mRNA_S-ischiensis_contig1.1174.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=432bp|location=Sequence derived from alignment at S-ischiensis_contig1:7947844..7948118- (Schizocladia ischiensis KU_0333)
GGCAGGCGAGCGCTGCCGAGCTGCTGGCGACAGGGTTGCGGCCGGCGCCA
AGCCCATGGGCGATGGCCTCCCCATGGCAGCTCCTGCCGGGGGGGGCGAG
CGGACAGGCATGGGCACGGCTGCGGCCGGGGTGGAAGGGGCGACCTCGGC
ACAGGGCAGGCGAGCGCTGCCGAGCTGCTGGCGACAGGGTTGCGGCCGGC
GCCAAGCCCATGGGCGATGGCCTCCCCATGGCAGCTCCTGCCGGGGGGGG
CGAGCGGACAGGCATGGGCACGGCTGCGGCCGGGGTGGAAGGGGCGACCT
CGGCACAGGGCTTGCTCAGCGGAGTCCGCCGCAGCGGAGGCACGGGGGTC
GACCCCTCGGCCCCCACTAGGGCTTGCTCAGCGGAGTCCGCCGCAGCGGA
GGCACGGGGGTCGACCCCTCGGCCCCCACTAG
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