mRNA_S-ischiensis_contig11.2117.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2117.1
Unique NamemRNA_S-ischiensis_contig11.2117.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.2117.1 vs. uniprot
Match: D7FHX5_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX5_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 7.750e-6
Identity = 25/54 (46.30%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:  106 RLPSWAQFCGRS--------GQVWFWDEETGETAWEPPGEAVGQAWGWLRAWDE 243
            RLP W Q+C  S         Q +F +EETGE++W  P +AV ++ GWLRAW E
Sbjct:  744 RLPLWVQWCSYSPHDGDDTNNQPYFVNEETGESSWVLPPDAVAESRGWLRAWSE 797
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHX5_ECTSI7.750e-646.30WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1314931..1315173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size244
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.7106104-CDS-S-ischiensis_contig11:1314930..13151731622815598.7106104-CDS-S-ischiensis_contig11:1314930..1315173Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1314931..1315173 +
1695739794.511007-CDS-S-ischiensis_contig11:1314930..13151731695739794.511007-CDS-S-ischiensis_contig11:1314930..1315173Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1314931..1315173 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2117.1prot_S-ischiensis_contig11.2117.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1314931..1315173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2117.1

>prot_S-ischiensis_contig11.2117.1 ID=prot_S-ischiensis_contig11.2117.1|Name=mRNA_S-ischiensis_contig11.2117.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=81bp
SCLGWPDPVGSASTGPSSSWYEGGGGGGRGHDWHGRLPSWAQFCGRSGQV
WFWDEETGETAWEPPGEAVGQAWGWLRAWDE
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mRNA from alignment at S-ischiensis_contig11:1314931..1315173+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2117.1 ID=mRNA_S-ischiensis_contig11.2117.1|Name=mRNA_S-ischiensis_contig11.2117.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=243bp|location=Sequence derived from alignment at S-ischiensis_contig11:1314931..1315173+ (Schizocladia ischiensis KU_0333)
TCGTGCCTGGGCTGGCCCGACCCTGTCGGCTCGGCGTCCACCGGGCCGTC
ATCAAGTTGGTATGAGGGCGGCGGCGGCGGCGGCCGCGGCCATGACTGGC
ACGGTCGGTTGCCGAGTTGGGCACAGTTTTGCGGGCGGTCCGGGCAAGTG
TGGTTCTGGGACGAGGAGACTGGAGAGACCGCTTGGGAGCCCCCGGGGGA
GGCGGTGGGGCAGGCGTGGGGGTGGCTGAGGGCGTGGGACGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:1314931..1315173+

>mRNA_S-ischiensis_contig11.2117.1 ID=mRNA_S-ischiensis_contig11.2117.1|Name=mRNA_S-ischiensis_contig11.2117.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=486bp|location=Sequence derived from alignment at S-ischiensis_contig11:1314931..1315173+ (Schizocladia ischiensis KU_0333)
TCGTGCCTGGGCTGGCCCGACCCTGTCGGCTCGGCGTCCACCGGGCCGTC
ATCAAGTTGGTATGAGGGCGGCGGCGGCGGCGGCCGCGGCCATGACTGGC
ACGGTCGGTTGCCGAGTTGGGCACAGTTTTGCGGGCGGTCCGGGCAAGTG
TGGTTCTGGGACGAGGAGACTGGAGAGACCGCTTGGGAGCCCCCGGGGGA
GGCGGTGGGGCAGGCGTGGGGGTGGCTGAGGGCGTGGGACGAGTCGTGCC
TGGGCTGGCCCGACCCTGTCGGCTCGGCGTCCACCGGGCCGTCATCAAGT
TGGTATGAGGGCGGCGGCGGCGGCGGCCGCGGCCATGACTGGCACGGTCG
GTTGCCGAGTTGGGCACAGTTTTGCGGGCGGTCCGGGCAAGTGTGGTTCT
GGGACGAGGAGACTGGAGAGACCGCTTGGGAGCCCCCGGGGGAGGCGGTG
GGGCAGGCGTGGGGGTGGCTGAGGGCGTGGGACGAG
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