mRNA_S-ischiensis_contig11.2085.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2085.1
Unique NamemRNA_S-ischiensis_contig11.2085.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig11.2085.1 vs. uniprot
Match: A0A6H5K1K0_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K0_9PHAE)

HSP 1 Score: 244 bits (624), Expect = 1.280e-70
Identity = 119/157 (75.80%), Postives = 127/157 (80.89%), Query Frame = 1
Query:   94 RRLKSVVGSPYYVAPEVLKEESGHGYDGTKVDVWSMGVILYAMLAGNLPFEKDLHTCTRFAKFGAWVRQAGATASLRAHCSGNVKDQMDMDRLDYPSWFFPHHFSCAAKSLLSALLHPDPASRLSVRQALRHPWV---RVEEGPGELNLPASLSSSG 555
            RRL SVVGSPYYVAPEVL+EESGHGYDGTK DVWSMGVILYAMLAGNLPFEK+L  C+RFAKFGAW R   ATASL AHCSGN KD MDMD LDYPSWFFP HFS AA+SLLS LLHPD + RLSVRQALRHPWV   R+  G G  +   S  S+G
Sbjct:  422 RRLTSVVGSPYYVAPEVLREESGHGYDGTKADVWSMGVILYAMLAGNLPFEKELLVCSRFAKFGAWARMPSATASLLAHCSGNPKDAMDMDCLDYPSWFFPQHFSFAARSLLSGLLHPDASCRLSVRQALRHPWVLDGRLYSGSGGSSSDGSEFSAG 578          
BLAST of mRNA_S-ischiensis_contig11.2085.1 vs. uniprot
Match: D8LQG7_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQG7_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 1.300e-58
Identity = 103/141 (73.05%), Postives = 111/141 (78.72%), Query Frame = 1
Query:  142 VLKEESGHGYDGTKVDVWSMGVILYAMLAGNLPFEKDLHTCTRFAKFGAWVRQAGATASLRAHCSGNVKDQMDMDRLDYPSWFFPHHFSCAAKSLLSALLHPDPASRLSVRQALRHPWV---RVEEGPGELNLPASLSSSG 555
            VL+EESG GYDGTK DVWSMGVILYAMLAGNLPFEK+L  C+RFAKFGAW R   ATASL AHCSGN KD MDMD LDYPSWFFP HFS AA+SLLS LLHPD + RLSVRQALRHPWV   R+  G G  +   S  S+G
Sbjct:  405 VLREESGDGYDGTKADVWSMGVILYAMLAGNLPFEKELLACSRFAKFGAWARMPSATASLLAHCSGNPKDAMDMDCLDYPSWFFPQHFSFAARSLLSGLLHPDASCRLSVRQALRHPWVLDGRLYSGSGGSSSDGSDFSAG 545          
BLAST of mRNA_S-ischiensis_contig11.2085.1 vs. uniprot
Match: A0A397A1G4_9STRA (Protein kinase domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A1G4_9STRA)

HSP 1 Score: 153 bits (386), Expect = 5.700e-40
Identity = 77/150 (51.33%), Postives = 96/150 (64.00%), Query Frame = 1
Query:   94 RRLKSVVGSPYYVAPEVLKEESGHGYDGTKVDVWSMGVILYAMLAGNLPFEKDLHTCTRFAKFGAWVRQAGATASLRAHCSGNVKD---QMDMDRLDYPSWFFPHHFSCAAKSLLSALLHPDPASRLSVRQALRHPWVRVEEGPGELNLP 534
            RRL+SVVGSP+YVAPEVL++ SG GYDG K D WS+GVILYAMLAG LPF KDL  C RF +F  W        SL+     +V+D    +    +D+P WFFP HFS   K+LL+ L++PDP  RLSV +A +H WV      G +  P
Sbjct:  120 RRLRSVVGSPHYVAPEVLQDASGQGYDGAKADAWSIGVILYAMLAGKLPFGKDLLKCIRFDRFKKW--------SLQTKYDDDVEDPAQDVAATAVDFPEWFFPAHFSYDVKALLAQLMYPDPCLRLSVDEASKHRWVLDRPRRGGVERP 261          
BLAST of mRNA_S-ischiensis_contig11.2085.1 vs. uniprot
Match: A0A7S1CMK9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CMK9_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.330e-39
Identity = 89/171 (52.05%), Postives = 105/171 (61.40%), Query Frame = 1
Query:   94 RRLKSVVGSPYYVAPEVLKEESGHGYDGTKVDVWSMGVILYAMLAGNLPFEKDLHTCTRFAKFGAWVRQAGAT---ASLRAHCSGNVK--------------------------DQMDMDRLDYPSWFFPHHFSCAAKSLLSALLHPDPASRLSVRQALRHPWVRVEEGPG 519
            +RL SVVGSP+YVAPEV+ +E GHGYDGTKVD WS+GVILYAMLAGNLPF KDL  C RF KF   +R A ++   A+ RA  +G  +                          D  D D  DYP WFFP H S +AKSL++ LLHP+P  RLSV  AL HPWV +E G G
Sbjct:  460 KRLTSVVGSPHYVAPEVV-QEVGHGYDGTKVDAWSIGVILYAMLAGNLPFGKDLLACPRFHKFSQLMRDATSSRLRAAARAAAAGVGRLRTLTEEXXXXXXXXXXXXXGGAYGDDASDED--DYPEWFFPPHISQSAKSLVAGLLHPEPEHRLSVNAALTHPWV-LEGGLG 626          
BLAST of mRNA_S-ischiensis_contig11.2085.1 vs. uniprot
Match: A0A8K1FHV0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHV0_PYTOL)

HSP 1 Score: 154 bits (390), Expect = 1.380e-39
Identity = 79/152 (51.97%), Postives = 95/152 (62.50%), Query Frame = 1
Query:   43 GGPHSSKGRGPXXXXXXRRLKSVVGSPYYVAPEVLKEESGHGYDGTKVDVWSMGVILYAMLAGNLPFEKDLHTCTRFAKFGAWVRQAGATASLRAHCSGNVKDQMDMDRLDYPSWFFPHHFSCAAKSLLSALLHPDPASRLSVRQALRHPWV 498
            GGP S+    P      RRL+SVVGSP+YVAPEVL + +G GYDG K D WS+GVI+YAMLAGNLPF KDL  C R+ KF  W                   D+  +D + +PSWFFP HFS   KSL++ LL+PDP  RLSV +A RH WV
Sbjct:  351 GGPGSTSVPTPASVQAIRRLRSVVGSPHYVAPEVLMD-AGQGYDGAKADAWSIGVIVYAMLAGNLPFGKDLLKCLRYEKFKKWCYNT------------KYSDEDPIDEIIFPSWFFPPHFSLEVKSLITQLLYPDPTMRLSVDEAQRHSWV 489          
BLAST of mRNA_S-ischiensis_contig11.2085.1 vs. uniprot
Match: A0A6A4ZCA8_9STRA (Protein kinase domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZCA8_9STRA)

HSP 1 Score: 153 bits (386), Expect = 3.130e-39
Identity = 77/150 (51.33%), Postives = 96/150 (64.00%), Query Frame = 1
Query:   94 RRLKSVVGSPYYVAPEVLKEESGHGYDGTKVDVWSMGVILYAMLAGNLPFEKDLHTCTRFAKFGAWVRQAGATASLRAHCSGNVKD---QMDMDRLDYPSWFFPHHFSCAAKSLLSALLHPDPASRLSVRQALRHPWVRVEEGPGELNLP 534
            RRL+SVVGSP+YVAPEVL++ SG GYDG K D WS+GVILYAMLAG LPF KDL  C RF +F  W        SL+     +V+D    +    +D+P WFFP HFS   K+LL+ L++PDP  RLSV +A +H WV      G +  P
Sbjct:  240 RRLRSVVGSPHYVAPEVLQDASGQGYDGAKADAWSIGVILYAMLAGKLPFGKDLLKCIRFDRFKKW--------SLQTKYDDDVEDPAHDVAATAVDFPEWFFPAHFSYDVKALLAQLMYPDPCLRLSVDEASKHRWVLDRPRRGGVERP 381          
BLAST of mRNA_S-ischiensis_contig11.2085.1 vs. uniprot
Match: A0A1V9YC82_9STRA (Serine/threonine protein kinase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YC82_9STRA)

HSP 1 Score: 147 bits (372), Expect = 1.920e-37
Identity = 73/147 (49.66%), Postives = 100/147 (68.03%), Query Frame = 1
Query:   94 RRLKSVVGSPYYVAPEVLKEESGHGYDGTKVDVWSMGVILYAMLAGNLPFEKDLHTCTRFAKFGAWVRQAGATASLRAHCSGNVKDQMDMDRLDYPSWFFPHHFSCAAKSLLSALLHPDPASRLSVRQALRHPWVRV----EEGPGE 522
            RRL+SVVGSP+YVAPEV+ ++ G GYDGTK D WS+G+ILYAMLAG+LPF KDL  C R+ KF  W        S +   + + +D  +   +++P WFFP +FS   KSL+S L++PDP  RLSV +A++H WV +    ++GP E
Sbjct:  217 RRLRSVVGSPHYVAPEVI-QDMGQGYDGTKADAWSIGIILYAMLAGSLPFGKDLFKCIRYEKFKKW--------SYQTKYNDDAEDPAN--EVEFPEWFFPQNFSQDVKSLISQLIYPDPCLRLSVDEAVQHRWVVIATESQKGPQE 352          
BLAST of mRNA_S-ischiensis_contig11.2085.1 vs. uniprot
Match: A0A024TV81_9STRA (CAMK/CAMKL/MARK protein kinase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TV81_9STRA)

HSP 1 Score: 148 bits (374), Expect = 3.090e-37
Identity = 74/138 (53.62%), Postives = 92/138 (66.67%), Query Frame = 1
Query:   94 RRLKSVVGSPYYVAPEVLKEESGHGYDGTKVDVWSMGVILYAMLAGNLPFEKDLHTCTRFAKFGAWVRQAGATASLR-AHCSGNVKD--QMDMDRLDYPSWFFPHHFSCAAKSLLSALLHPDPASRLSVRQALRHPWV 498
            RRL+SVVGSP+YVAPEVL++ SG GYDG K D WS+GVILYAMLAG LPF KDL  C R+ +F  W +           H  G+ +D  Q   D + +P WFFP  FS   K+LL+ LL+PDP  RLSV +A++H WV
Sbjct:  309 RRLRSVVGSPHYVAPEVLQDASGQGYDGAKADAWSIGVILYAMLAGKLPFGKDLLKCVRYDRFKKWSQATKYNDDDDDLHDDGDSEDPAQEHRDAVVFPDWFFPVQFSYDVKALLAQLLYPDPCLRLSVDEAMKHRWV 446          
BLAST of mRNA_S-ischiensis_contig11.2085.1 vs. uniprot
Match: A0A3R6VF73_9STRA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6VF73_9STRA)

HSP 1 Score: 148 bits (374), Expect = 7.250e-37
Identity = 74/138 (53.62%), Postives = 92/138 (66.67%), Query Frame = 1
Query:   94 RRLKSVVGSPYYVAPEVLKEESGHGYDGTKVDVWSMGVILYAMLAGNLPFEKDLHTCTRFAKFGAWVRQAGATASLR-AHCSGNVKD--QMDMDRLDYPSWFFPHHFSCAAKSLLSALLHPDPASRLSVRQALRHPWV 498
            RRL+SVVGSP+YVAPEVL++ SG GYDG K D WS+GVILYAMLAG LPF KDL  C R+ +F  W +           H  G+ +D  Q   D + +P WFFP  FS   K+LL+ LL+PDP  RLSV +A++H WV
Sbjct:  207 RRLRSVVGSPHYVAPEVLQDASGQGYDGAKADAWSIGVILYAMLAGKLPFGKDLLKCVRYDRFKKWSQATKYNDDDDDLHDDGDSEDPAQEHRDAVVFPDWFFPVQFSYDVKALLAQLLYPDPCLRLSVDEAMKHRWV 344          
BLAST of mRNA_S-ischiensis_contig11.2085.1 vs. uniprot
Match: A0A482SZ15_9ARCH (Protein kinase domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SZ15_9ARCH)

HSP 1 Score: 147 bits (370), Expect = 7.300e-37
Identity = 75/133 (56.39%), Postives = 91/133 (68.42%), Query Frame = 1
Query:   94 RRLKSVVGSPYYVAPEVLKEESGHGYDGTKVDVWSMGVILYAMLAGNLPFEKDLHTCTRFAKFGAWVRQAGATASLRAHCSGNVKDQMDMDRLDYPSWFFPHHFSCAAKSLLSALLHPDPASRLSVRQALRHP 492
            R LKSVVGSP+YVAPEVL+     GYDG K DVWSMGVILYAMLAGNLPF  +L TC RF +FG WVR++   A +R      V         DYP W FP  F+ A+K L+ A+LHPDPA R++V +A++HP
Sbjct:   46 RVLKSVVGSPFYVAPEVLQAS---GYDGPKADVWSMGVILYAMLAGNLPFGHELATCKRFRQFGKWVRES-TMAGVRFWDDATV---------DYPVWLFPARFTPASKGLIVAMLHPDPACRITVGEAMKHP 165          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1K0_9PHAE1.280e-7075.80Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LQG7_ECTSI1.300e-5873.05Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A397A1G4_9STRA5.700e-4051.33Protein kinase domain-containing protein n=3 Tax=A... [more]
A0A7S1CMK9_9STRA1.330e-3952.05Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A8K1FHV0_PYTOL1.380e-3951.97Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A4ZCA8_9STRA3.130e-3951.33Protein kinase domain-containing protein n=3 Tax=A... [more]
A0A1V9YC82_9STRA1.920e-3749.66Serine/threonine protein kinase n=1 Tax=Thraustoth... [more]
A0A024TV81_9STRA3.090e-3753.62CAMK/CAMKL/MARK protein kinase n=1 Tax=Aphanomyces... [more]
A0A3R6VF73_9STRA7.250e-3753.62Protein kinase domain-containing protein (Fragment... [more]
A0A482SZ15_9ARCH7.300e-3756.39Protein kinase domain-containing protein n=1 Tax=a... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1050909..1053293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.8
Seed ortholog evalue5.4e-35
Seed eggNOG ortholog42099.EPrPV00000015404
KEGG koko:K08796
EggNOG free text desc.Serine threonine protein kinase. Source PGD
EggNOG OGs1MEPX@121069,KOG0583@1,KOG0583@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko03036,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size795
Cds size792
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2085.1prot_S-ischiensis_contig11.2085.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1050909..1053292 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815596.040023-CDS-S-ischiensis_contig11:1050908..10510491622815596.040023-CDS-S-ischiensis_contig11:1050908..1051049Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1050909..1051049 +
1695739792.7168746-CDS-S-ischiensis_contig11:1050908..10510491695739792.7168746-CDS-S-ischiensis_contig11:1050908..1051049Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1050909..1051049 +
1622815596.0520358-CDS-S-ischiensis_contig11:1052084..10522261622815596.0520358-CDS-S-ischiensis_contig11:1052084..1052226Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1052085..1052226 +
1695739792.729842-CDS-S-ischiensis_contig11:1052084..10522261695739792.729842-CDS-S-ischiensis_contig11:1052084..1052226Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1052085..1052226 +
1622815596.063766-CDS-S-ischiensis_contig11:1052353..10525471622815596.063766-CDS-S-ischiensis_contig11:1052353..1052547Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1052354..1052547 +
1695739792.743548-CDS-S-ischiensis_contig11:1052353..10525471695739792.743548-CDS-S-ischiensis_contig11:1052353..1052547Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1052354..1052547 +
1622815596.0775685-CDS-S-ischiensis_contig11:1052977..10532921622815596.0775685-CDS-S-ischiensis_contig11:1052977..1053292Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1052978..1053292 +
1695739792.7529962-CDS-S-ischiensis_contig11:1052977..10532921695739792.7529962-CDS-S-ischiensis_contig11:1052977..1053292Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1052978..1053292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2085.1

>prot_S-ischiensis_contig11.2085.1 ID=prot_S-ischiensis_contig11.2085.1|Name=mRNA_S-ischiensis_contig11.2085.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=264bp
GGGGQGNSQGLGGHGGPHSSKGRGPRGPRGMRRLKSVVGSPYYVAPEVLK
EESGHGYDGTKVDVWSMGVILYAMLAGNLPFEKDLHTCTRFAKFGAWVRQ
AGATASLRAHCSGNVKDQMDMDRLDYPSWFFPHHFSCAAKSLLSALLHPD
PASRLSVRQALRHPWVRVEEGPGELNLPASLSSSGNNSSDGSSDGDERRA
RQTNDGAQPSGGPNSSNSNTNIVSVGNSSRNDARPEPPPEVVPSSRGTGQ
GREQGRRDPGRASG
back to top

mRNA from alignment at S-ischiensis_contig11:1050909..1053293+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2085.1 ID=mRNA_S-ischiensis_contig11.2085.1|Name=mRNA_S-ischiensis_contig11.2085.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2385bp|location=Sequence derived from alignment at S-ischiensis_contig11:1050909..1053293+ (Schizocladia ischiensis KU_0333)
GGCGGTGGCGGCCAGGGCAACAGCCAGGGGCTGGGAGGCCATGGGGGACC ACATTCGTCCAAGGGGAGGGGGCCCCGCGGGCCGCGGGGCATGCGCCGGC TCAAGTCTGTGGTGGGGTCGCCCTACTACGTCGCGCCCGAGGTGGGTGGT TTGGGGTGTTGAGATGTTTGAAGTGAAGTATATGCTGTGTGTAGTGTAGT CGACTATGTATGGATGTACAGTACTGTGTGCACTACTCGAGTAGAGTGCC ACAATACGTAATCCTTGGAGTGCTGTAGCACTGGTACATGTGTACTGATT GAGTGTACCTACACTACTTGAGTAGATGAACGCACTTTTCACTTGTGCGC GGTCAATAGTCTCAGGACTACGGCAAGCACAAGGTGAGTACATATCCTGT GTCCAGGTCAAGGGGTCTCTGCTGCTGTGCACTGTTTTTTTTTTGCCGGG CCTTTGGCCTGGCTTCGCCCTTACAAGTAGCCCTTCGGAGGATGTGGGAT ACACAATAGTGAGATTTAGAGAGTGGCATTGCCCTGAGCAACCGCCACCT TCTAAAAGAGGCACACCTACTTCGAGTACACGTTTCACTGTACAGTACAG CCGACCTACTCGTGCAAGGTTATCCTACTTGGATTTTGTTTGCTCGGCTT CCCTTGGCGTGCCATTTCGAGGCACGTCTTTTCTTTCTTCGTCCTGTTGC CGTGCTTGCATGGCTTGAATTCGCGTCGTGTGCGCAGGTTGGGGGGCTAA GTACGAGGACAGTACACAGCTGGGGCACGCTTCATTCTGGGCCCTGGAGC CATTTTTCGGCTCTGCCCGTGCTCCCGCGGTCGCACACCATCCGCTTTCT TGGCGTTTTGCATCCTGGGTGCGTGGACACCTCCGTGCAAATGGCTGCAA TGGTTGCGTGTCATAGTCTACTGTAGTGTAGTGCTATGGCCGTGGTAGCG GGTGGTACTAGCAGGTGTTGCAATAACAGGAACAACACAGGGCGAGGCGC AGGACACGTCACTAGCAGTAGTGTGTTCGAGCCCCCCCTGCACCTTCTTA GACGTATTTGAACTCGCTCCCGCGTACTGGTGCGCGCGCACAGGCACTCA CGCACACACACACATACACACACACACACATGCGCCTCCCCTCTCTCATC TTTCCGATCCTGTCTGCCTCTGTTAGGTGTTGAAGGAGGAGAGCGGGCAC GGGTACGACGGCACCAAGGTGGACGTCTGGTCCATGGGGGTGATCCTCTA CGCCATGCTGGCCGGCAACCTGCCGTTTGAGAAGGACCTGCACACGTGCA CCCGCTTCGCCAAGTTCGGTGAGAGAGATCTTGGGACACGCGCCATACCA ACCTTCACGAAGTTTAGTAGCAGTGGATCAAATTCAATCGATTTGGCTTG ATCGTCTAATTAATCGACTTGAAACGCCTCGACCGGACGACCCAGGCGCG TGGGTGCGGCAGGCCGGGGCCACGGCCAGCCTGCGGGCCCACTGCTCCGG CAACGTGAAGGACCAGATGGACATGGACAGGCTGGACTACCCCAGCTGGT TCTTCCCCCACCACTTCAGCTGCGCGGCCAAATCTCTGCTCTCTGCTCTG CTGCATCCGGACCCGGCCAGCCGCTTGTCTGTACGACAGGTGGGGGATAA TAGACGGTGGCCCGCGGGCGGGCGGGCGTTTCTTTTGTTTTGGGGGGGGG GCAAGTTCTTGGGAGGCTGCCTACTGTACAGCCAGACTCTCCGTTCTTTG GGCGAAGCGGGGTGGAGGGGGCGGGCAGGCAGCAGGGAGGGCTGGGGCGA GGGAAGAGGGCGGGAGGGGTGATTAAGTAACAATGATCGGGTACACTGAC CGTGTATGAGGCGCTCTAGAGCTCTATATGTACACGGTCGAATGCTGTCT GCAGGCGCATACAGTACACGCCCTTTTTTTTAGGGCAATATTTCGCGTCA TGCTGTGGTACCGGCGCTCTGATGAGCTGCTCTTCCCTACCTACACACAC ACACACACACGTGCGCGCACGCACACACACACACACACACACACACACAC ACACCTCCTTCCGTCACAGGCCCTGAGGCACCCGTGGGTCCGAGTGGAGG AGGGGCCGGGCGAGCTCAACCTCCCCGCCTCCCTCAGCAGCAGCGGGAAC AACAGCAGCGACGGCAGCAGCGACGGCGACGAGCGGCGGGCGCGGCAGAC AAACGACGGCGCCCAGCCCAGCGGCGGTCCCAACAGCAGCAACAGCAACA CCAACATTGTCAGCGTGGGCAACAGCAGCAGAAACGACGCTCGGCCGGAA CCTCCACCAGAGGTTGTTCCCAGCAGCCGGGGTACAGGGCAGGGGCGGGA GCAGGGACGCCGGGACCCCGGAAGGGCGAGCGGGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig11:1050909..1053293+

>mRNA_S-ischiensis_contig11.2085.1 ID=mRNA_S-ischiensis_contig11.2085.1|Name=mRNA_S-ischiensis_contig11.2085.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1584bp|location=Sequence derived from alignment at S-ischiensis_contig11:1050909..1053293+ (Schizocladia ischiensis KU_0333)
GGCGGTGGCGGCCAGGGCAACAGCCAGGGGCTGGGAGGCCATGGGGGACC
ACATTCGTCCAAGGGGAGGGGGCCCCGCGGGCCGCGGGGCATGCGCCGGC
TCAAGTCTGTGGTGGGGTCGCCCTACTACGTCGCGCCCGAGGGCGGTGGC
GGCCAGGGCAACAGCCAGGGGCTGGGAGGCCATGGGGGACCACATTCGTC
CAAGGGGAGGGGGCCCCGCGGGCCGCGGGGCATGCGCCGGCTCAAGTCTG
TGGTGGGGTCGCCCTACTACGTCGCGCCCGAGGTGTTGAAGGAGGAGAGC
GGGCACGGGTACGACGGCACCAAGGTGGACGTCTGGTCCATGGGGGTGAT
CCTCTACGCCATGCTGGCCGGCAACCTGCCGTTTGAGAAGGACCTGCACA
CGTGCACCCGCTTCGCCAAGTTCGGTGTTGAAGGAGGAGAGCGGGCACGG
GTACGACGGCACCAAGGTGGACGTCTGGTCCATGGGGGTGATCCTCTACG
CCATGCTGGCCGGCAACCTGCCGTTTGAGAAGGACCTGCACACGTGCACC
CGCTTCGCCAAGTTCGGCGCGTGGGTGCGGCAGGCCGGGGCCACGGCCAG
CCTGCGGGCCCACTGCTCCGGCAACGTGAAGGACCAGATGGACATGGACA
GGCTGGACTACCCCAGCTGGTTCTTCCCCCACCACTTCAGCTGCGCGGCC
AAATCTCTGCTCTCTGCTCTGCTGCATCCGGACCCGGCCAGCCGCTTGTC
TGTACGACAGGCGCGTGGGTGCGGCAGGCCGGGGCCACGGCCAGCCTGCG
GGCCCACTGCTCCGGCAACGTGAAGGACCAGATGGACATGGACAGGCTGG
ACTACCCCAGCTGGTTCTTCCCCCACCACTTCAGCTGCGCGGCCAAATCT
CTGCTCTCTGCTCTGCTGCATCCGGACCCGGCCAGCCGCTTGTCTGTACG
ACAGGCCCTGAGGCACCCGTGGGTCCGAGTGGAGGAGGGGCCGGGCGAGC
TCAACCTCCCCGCCTCCCTCAGCAGCAGCGGGAACAACAGCAGCGACGGC
AGCAGCGACGGCGACGAGCGGCGGGCGCGGCAGACAAACGACGGCGCCCA
GCCCAGCGGCGGTCCCAACAGCAGCAACAGCAACACCAACATTGTCAGCG
TGGGCAACAGCAGCAGAAACGACGCTCGGCCGGAACCTCCACCAGAGGTT
GTTCCCAGCAGCCGGGGTACAGGGCAGGGGCGGGAGCAGGGACGCCGGGA
CCCCGGAAGGGCGAGCGGGGCCCTGAGGCACCCGTGGGTCCGAGTGGAGG
AGGGGCCGGGCGAGCTCAACCTCCCCGCCTCCCTCAGCAGCAGCGGGAAC
AACAGCAGCGACGGCAGCAGCGACGGCGACGAGCGGCGGGCGCGGCAGAC
AAACGACGGCGCCCAGCCCAGCGGCGGTCCCAACAGCAGCAACAGCAACA
CCAACATTGTCAGCGTGGGCAACAGCAGCAGAAACGACGCTCGGCCGGAA
CCTCCACCAGAGGTTGTTCCCAGCAGCCGGGGTACAGGGCAGGGGCGGGA
GCAGGGACGCCGGGACCCCGGAAGGGCGAGCGGG
back to top