mRNA_S-ischiensis_contig11.2374.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2374.1
Unique NamemRNA_S-ischiensis_contig11.2374.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:3461275..3462319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1047
Cds size576
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.1667278-CDS-S-ischiensis_contig11:3461274..34618501622815585.1667278-CDS-S-ischiensis_contig11:3461274..3461850Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3461275..3461850 +
1695739785.349483-CDS-S-ischiensis_contig11:3461274..34618501695739785.349483-CDS-S-ischiensis_contig11:3461274..3461850Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3461275..3461850 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.1852589-UTR-S-ischiensis_contig11:3461850..34623191622815585.1852589-UTR-S-ischiensis_contig11:3461850..3462319Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 3461851..3462319 +
1695739785.3664725-UTR-S-ischiensis_contig11:3461850..34623191695739785.3664725-UTR-S-ischiensis_contig11:3461850..3462319Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 3461851..3462319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2374.1prot_S-ischiensis_contig11.2374.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 3461275..3461850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2374.1

>prot_S-ischiensis_contig11.2374.1 ID=prot_S-ischiensis_contig11.2374.1|Name=mRNA_S-ischiensis_contig11.2374.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=192bp
RRRHRRRRQRPRGPGRRGLPLRGGPLPPGSCLVPLRRCRLLLPCRRRQGL
LLERRGGGRDGGPGLTIAAPAPLPRAENARGRPPGRGAAGQAGLLRGDRP
GVQEGGGRGADELAVAHVARLALAAAAPRDLVVLVHVARLADAAAVVLAV
RVWAVADHAAPGGAPALRDGRFGPVGAAAAAAAPAGGRRRR*
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mRNA from alignment at S-ischiensis_contig11:3461275..3462319+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2374.1 ID=mRNA_S-ischiensis_contig11.2374.1|Name=mRNA_S-ischiensis_contig11.2374.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1045bp|location=Sequence derived from alignment at S-ischiensis_contig11:3461275..3462319+ (Schizocladia ischiensis KU_0333)
CGCCGCCGCCACCGCCGACGGCGACAGCGGCCACGGGGACCCGGTCGCCG
GGGCCTGCCCCTGCGAGGAGGCCCGCTGCCTCCTGGCAGCTGCCTTGTGC
CTCTTCGCCGATGTCGCCTTCTTCTTCCTTGCCGGCGACGGCAAGGACTG
CTTCTTGAGCGACGCGGCGGCGGCCGGGACGGCGGGCCCGGGCTTACTAT
TGCCGCCCCCGCCCCCCTTCCCCGGGCGGAGAACGCGCGCGGGCGGCCGC
CGGGGCGGGGCGCGGCCGGACAGGCGGGTCTCCTGCGCGGCGACCGCCCG
GGCGTTCAGGAGGGCGGCGGCCGTGGCGCCGACGAGCTTGCCGTTGCCCA
TGTCGCCCGCCTTGCGCTTGCGGCGGCGGCCCCGCGTGATCTCGTTGTAC
TCGTGCATGTAGCACGGCTTGCAGATGCCGCGGCTGTAGTGCTTGCGGTC
CGTGTGTGGGCAGTTGCAGATCACGCCGCCCCCGGAGGTGCCCCCGCCCT
GCGCGATGGCCGATTTGGCCCAGTTGGAGCCGCCGCCGCCGCCGCCGCGC
CCGCCGGCGGACGACGACGACGATGACCTGCCCGCCGAGATGTGACAATC
GCTGATACAAGATCATTCAATTCTTAAACGGGACAATTACTACAGTAATA
CGTTCCCCTGGCGAGGTAAGGAAGGGCCATTGTTGAGGTCTCTAGTTACG
TGGCCCGCACCTCGCCCCGTGTTGTTCCTTGTAATACTATTACGAGAACA
GTCGTACAATCTCACACACGTGCGATTGTACTGAGTACTTCCAAGTACCT
CGTTGCAATTTATACGCGCCCGCCGGCGGACGACGACGATGATGACCTGC
CCGAGATGTGACAATCACTAATATAAGAACATTCAATTCTTTCTTAAATG
GGCCAGCTCCTAATACGAGAACAGTCAATCTCACACACGTGCAATTGCAC
CTCGTTGTAATTTACTTGGAAGTGTATGAATCACCGACCTGCCCGAGATG
GCGGAGCTGGCCCAGCTGCCGCCGCCGCTGCCGGTGGGCCCCCGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:3461275..3462319+

>mRNA_S-ischiensis_contig11.2374.1 ID=mRNA_S-ischiensis_contig11.2374.1|Name=mRNA_S-ischiensis_contig11.2374.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1152bp|location=Sequence derived from alignment at S-ischiensis_contig11:3461275..3462319+ (Schizocladia ischiensis KU_0333)
CGCCGCCGCCACCGCCGACGGCGACAGCGGCCACGGGGACCCGGTCGCCG
GGGCCTGCCCCTGCGAGGAGGCCCGCTGCCTCCTGGCAGCTGCCTTGTGC
CTCTTCGCCGATGTCGCCTTCTTCTTCCTTGCCGGCGACGGCAAGGACTG
CTTCTTGAGCGACGCGGCGGCGGCCGGGACGGCGGGCCCGGGCTTACTAT
TGCCGCCCCCGCCCCCCTTCCCCGGGCGGAGAACGCGCGCGGGCGGCCGC
CGGGGCGGGGCGCGGCCGGACAGGCGGGTCTCCTGCGCGGCGACCGCCCG
GGCGTTCAGGAGGGCGGCGGCCGTGGCGCCGACGAGCTTGCCGTTGCCCA
TGTCGCCCGCCTTGCGCTTGCGGCGGCGGCCCCGCGTGATCTCGTTGTAC
TCGTGCATGTAGCACGGCTTGCAGATGCCGCGGCTGTAGTGCTTGCGGTC
CGTGTGTGGGCAGTTGCAGATCACGCCGCCCCCGGAGGTGCCCCCGCCCT
GCGCGATGGCCGATTTGGCCCAGTTGGAGCCGCCGCCGCCGCCGCCGCGC
CCGCCGGCGGACGACGACGACGATGACGCCGCCGCCACCGCCGACGGCGA
CAGCGGCCACGGGGACCCGGTCGCCGGGGCCTGCCCCTGCGAGGAGGCCC
GCTGCCTCCTGGCAGCTGCCTTGTGCCTCTTCGCCGATGTCGCCTTCTTC
TTCCTTGCCGGCGACGGCAAGGACTGCTTCTTGAGCGACGCGGCGGCGGC
CGGGACGGCGGGCCCGGGCTTACTATTGCCGCCCCCGCCCCCCTTCCCCG
GGCGGAGAACGCGCGCGGGCGGCCGCCGGGGCGGGGCGCGGCCGGACAGG
CGGGTCTCCTGCGCGGCGACCGCCCGGGCGTTCAGGAGGGCGGCGGCCGT
GGCGCCGACGAGCTTGCCGTTGCCCATGTCGCCCGCCTTGCGCTTGCGGC
GGCGGCCCCGCGTGATCTCGTTGTACTCGTGCATGTAGCACGGCTTGCAG
ATGCCGCGGCTGTAGTGCTTGCGGTCCGTGTGTGGGCAGTTGCAGATCAC
GCCGCCCCCGGAGGTGCCCCCGCCCTGCGCGATGGCCGATTTGGCCCAGT
TGGAGCCGCCGCCGCCGCCGCCGCGCCCGCCGGCGGACGACGACGACGAT
GA
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