mRNA_S-ischiensis_contig92.20943.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig92.20943.1
Unique NamemRNA_S-ischiensis_contig92.20943.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig92.20943.1 vs. uniprot
Match: A0A6H5JXY9_9PHAE (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY9_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 3.860e-42
Identity = 99/184 (53.80%), Postives = 124/184 (67.39%), Query Frame = 1 
Query:   64 FAPHVLYLSATPIPRSLALAAFGEVDVSQLSERPERGAAGEVETSVVPISRAGEVMARLKRLLDKGDPST-RVFWVVSRIDPSTGGGDGHGDDDDASGSRYQSNLGSAIERYDSLCVELGEERVSLLHGKMPADMKNSVLSSFSKPIGEGAGAGPSVLVTTSIIEVGVDVPAARICIVENAEMF 612
            FA HVLYLSATPIPRSL LA +G++++SQ+ E P RGAA  +ET++VP+++A EVM RLK   D  D +   VFWV+ +I+ S               S  + +L SA ERYD+L  ELGE+RV+LLHGKM +  KN  LS FS   G   G G  VLV+TSIIEVGVDVP A +C+VENAEMF
Sbjct:  561 FAQHVLYLSATPIPRSLTLALYGDMEISQIREMP-RGAAN-IETTLVPVAKAKEVMDRLKGREDTDDKARCGVFWVLPQINKSE--------------SSARQHLASATERYDALVKELGEDRVTLLHGKMTSAEKNRRLSEFS---GGEKGKGLRVLVSTSIIEVGVDVPRAGVCVVENAEMF 725
[Close]
BLAST of mRNA_S-ischiensis_contig92.20943.1 vs. uniprot
Match: D7FPN7_ECTSI (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN7_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 1.130e-38
Identity = 95/183 (51.91%), Postives = 116/183 (63.39%), Query Frame = 1 
Query:   64 FAPHVLYLSATPIPRSLALAAFGEVDVSQLSERPERGAAGEVETSVVPISRAGEVMARLKRLLDKGDPSTRVFWVVSRIDPSTGGGDGHGDDDDASGSRYQSNLGSAIERYDSLCVELGEERVSLLHGKMPADMKNSVLSSFSKPIGEGAGAGPSVLVTTSIIEVGVDVPAARICIVENAEMF 612
            FA HVLYLSATPIPRSL LA FG++++SQ+ E P RG A  +ET+++P+++A EVM RLK                           G  D DD S S  + +L SA ERYD+L  ELGE+RV+LLHGKM +  KN  LS FS   G   G G  VLV+TSIIEVGVDVP A +C+VENAEMF
Sbjct:  175 FAQHVLYLSATPIPRSLTLALFGDMEISQIREMP-RGTAN-IETTLIPVAKAKEVMDRLK---------------------------GREDTDDKSESSTRQHLASATERYDALVKELGEDRVTLLHGKMTSAEKNKRLSEFS---GGEKGKGLRVLVSTSIIEVGVDVPRAGVCVVENAEMF 325
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BLAST of mRNA_S-ischiensis_contig92.20943.1 vs. uniprot
Match: A0A836CEI0_9STRA (ATP-dependent DNA helicase RecG n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI0_9STRA)

HSP 1 Score: 137 bits (346), Expect = 5.900e-34
Identity = 84/184 (45.65%), Postives = 118/184 (64.13%), Query Frame = 1 
Query:   73 HVLYLSATPIPRSLALAAFGEVDVSQLSERPERGAAGEVETSVVPISRAGEVMARLKRLLDKGDPST----RVFWVVSRIDPSTGGGDGHGDDDDASGSRYQSNLGSAIERYDSLCVELGEERVSLLHGKMPADMKNSVLSSFSKPIGEGAGAGPSVLVTTSIIEVGVDVPAARICIVENAEMF 612
            HVLY+SATP PR+L+L AFG+VDV+ L E+P RGA+  V+T++         + R++ +LD  DP+T    +VFWV+  +  +  GG           +R +++L SA  R+ SL   LGEERV LLHG+M A  KN VL+ F++P     G+   VLV T+IIEVGVD+P AR+C++ENAE F
Sbjct:  558 HVLYMSATPTPRTLSLTAFGDVDVALLREKP-RGASQHVQTTLT--------VERVRAILD--DPATAHADKVFWVLPLVQEAPSGG-----------TRRRAHLASAERRHASLAEALGEERVGLLHGRMTAAEKNRVLARFAEP-----GSPMRVLVATTIIEVGVDIPEARVCVIENAEQF 714
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BLAST of mRNA_S-ischiensis_contig92.20943.1 vs. uniprot
Match: A0A2D6M630_9PROT (ATP-dependent DNA helicase RecG n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D6M630_9PROT)

HSP 1 Score: 114 bits (285), Expect = 7.530e-26
Identity = 75/180 (41.67%), Postives = 107/180 (59.44%), Query Frame = 1 
Query:   73 HVLYLSATPIPRSLALAAFGEVDVSQLSERPERGAAGEVETSVVPISRAGEVMARLKRLLDKGDPSTRVFWVVSRIDPSTGGGDGHGDDDDASGSRYQSNLGSAIERYDSLCVELGEERVSLLHGKMPADMKNSVLSSFSKPIGEGAGAGPSVLVTTSIIEVGVDVPAARICIVENAEMF 612
            +VL ++ATPIPR+L  AAFG++DVS+L+E+P     G V+T VVP+SR  +V+  + R L +G+   RV+WV   ID S                    +L +A ER+D+L   LGE RV L+HG M    K++V++ F       A    +VLV T++IEVGVDVP A + +VE+AE F
Sbjct:  415 NVLVMTATPIPRTLTQAAFGDMDVSRLTEKPP--GRGPVDTRVVPVSRINDVVNAISRCLARGE---RVYWVCPLIDESEA-----------------LDLAAATERFDALSHLLGE-RVGLVHGAMKGKEKDAVMARF-------ASGEITVLVATTVIEVGVDVPEATMMVVEHAERF 564
[Close]
BLAST of mRNA_S-ischiensis_contig92.20943.1 vs. uniprot
Match: A0A444LH41_9HYPH (ATP-dependent DNA helicase RecG n=1 Tax=Rhizobium sp. 24NR TaxID=2503024 RepID=A0A444LH41_9HYPH)

HSP 1 Score: 114 bits (284), Expect = 1.030e-25
Identity = 70/183 (38.25%), Postives = 110/183 (60.11%), Query Frame = 1 
Query:   70 PHVLYLSATPIPRSLALAAFGEVDVSQLSERPERGAAGE--VETSVVPISRAGEVMARLKRLLDKGDPSTRVFWVVSRIDPSTGGGDGHGDDDDASGSRYQSNLGSAIERYDSLCVELGEERVSLLHGKMPADMKNSVLSSFSKPIGEGAGAGPSVLVTTSIIEVGVDVPAARICIVENAEMF 612
            PH+L ++ATPIPR+L LAAFG++DVS+L+E+P    AG   ++T+ +P+ R G++++RL+  L +G    + +W+   ++ S                  QS L SA ER+  L  ELG   V L+HG+M    K++V+++F    GE       +LV T+++EVGVDVP A I ++E+AE F
Sbjct:  422 PHMLVMTATPIPRTLVLAAFGDMDVSKLTEKP----AGRKPIQTATIPLERIGDIVSRLRSALAEGK---KAYWICPLVEESD-----------------QSELMSAEERHAVLSRELGTANVGLVHGRMTGPEKDAVMAAFKS--GE-----VRLLVATTVVEVGVDVPDATIMVIEHAENF 573
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BLAST of mRNA_S-ischiensis_contig92.20943.1 vs. uniprot
Match: A0A8G0T3Z6_9RHOB (ATP-dependent DNA helicase RecG n=1 Tax=Roseovarius sp. SCSIO 43702 TaxID=2823043 RepID=A0A8G0T3Z6_9RHOB)

HSP 1 Score: 113 bits (283), Expect = 1.400e-25
Identity = 74/179 (41.34%), Postives = 107/179 (59.78%), Query Frame = 1 
Query:   76 VLYLSATPIPRSLALAAFGEVDVSQLSERPERGAAGEVETSVVPISRAGEVMARLKRLLDKGDPSTRVFWVVSRIDPSTGGGDGHGDDDDASGSRYQSNLGSAIERYDSLCVELGEERVSLLHGKMPADMKNSVLSSFSKPIGEGAGAGPSVLVTTSIIEVGVDVPAARICIVENAEMF 612
            VL ++ATPIPRSLALA +G+++VS L E+P       V T++V ++R GEV+  L+R + +G    + +WV   +D S                   S+L SA ER+ SL  +LGE RV L+HG+MP + K++ +++F    GE      SVLV T++IEVGVDVP A I ++E AE F
Sbjct:  418 VLVMTATPIPRSLALAQYGDMEVSVLDEKPP--GRKPVRTALVNMARMGEVVEHLRRAVAEG---RQAYWVCPLVDESE-----------------VSDLSSAEERFRSLRAQLGEGRVGLVHGQMPPEEKDAAMAAFQA--GE-----TSVLVATTVIEVGVDVPNASIMVIERAEHF 567
[Close]
BLAST of mRNA_S-ischiensis_contig92.20943.1 vs. uniprot
Match: A0A1U9Z3N1_9HYPH (ATP-dependent DNA helicase RecG n=6 Tax=Hyphomicrobiales TaxID=356 RepID=A0A1U9Z3N1_9HYPH)

HSP 1 Score: 113 bits (282), Expect = 1.910e-25
Identity = 70/184 (38.04%), Postives = 108/184 (58.70%), Query Frame = 1 
Query:   67 APHVLYLSATPIPRSLALAAFGEVDVSQLSERPERGAAGE--VETSVVPISRAGEVMARLKRLLDKGDPSTRVFWVVSRIDPSTGGGDGHGDDDDASGSRYQSNLGSAIERYDSLCVELGEERVSLLHGKMPADMKNSVLSSFSKPIGEGAGAGPSVLVTTSIIEVGVDVPAARICIVENAEMF 612
            APH+L +SATPIPR+L LAAFG++DVS L+E+P    AG   ++T  +P+ R G+++ RL+  L +G  S   +W+   ++ S                     L SA ERY++L   LG ++V L+HG+M +  K++ + +F    GE       +LV T+++EVGVDVP A I ++E+AE F
Sbjct:  418 APHLLVMSATPIPRTLVLAAFGDMDVSNLTEKP----AGRKPIQTVTIPLERIGDIVGRLRDALAQGKKS---YWICPLVEESEA-----------------VELMSAEERYETLAKALGPDKVGLIHGRMSSTDKDAAMEAFRS--GE-----TRLLVATTVVEVGVDVPDASIIVIEHAERF 570
[Close]
BLAST of mRNA_S-ischiensis_contig92.20943.1 vs. uniprot
Match: A0A1Q9AFP9_9HYPH (ATP-dependent DNA helicase RecG n=3 Tax=Rhizobium TaxID=379 RepID=A0A1Q9AFP9_9HYPH)

HSP 1 Score: 113 bits (282), Expect = 1.920e-25
Identity = 71/184 (38.59%), Postives = 110/184 (59.78%), Query Frame = 1 
Query:   67 APHVLYLSATPIPRSLALAAFGEVDVSQLSERPERGAAGE--VETSVVPISRAGEVMARLKRLLDKGDPSTRVFWVVSRIDPSTGGGDGHGDDDDASGSRYQSNLGSAIERYDSLCVELGEERVSLLHGKMPADMKNSVLSSFSKPIGEGAGAGPSVLVTTSIIEVGVDVPAARICIVENAEMF 612
            APH+L ++ATPIPR+L LAAFG++DVS+L+E+P    AG   + T+ +P+ R G+V+ARLKR L +G    + +W+   ++ +                  +S L SA ER+  L   LG + V L+HG+M    K++V+ +F +       +   VLV T+++EVGVDVP A I ++E+AE F
Sbjct:  421 APHMLVMTATPIPRTLVLAAFGDMDVSKLTEKP----AGRKPITTATIPLERIGDVVARLKRALAEG---RKAYWICPLVEETE-----------------ESELMSAEERFQVLTSVLGPD-VGLVHGRMSGTEKDAVMQAFKQ-------SEIKVLVATTVVEVGVDVPDASIIVIEHAERF 572
[Close]
BLAST of mRNA_S-ischiensis_contig92.20943.1 vs. uniprot
Match: A0A8J7M4D7_9RHOB (ATP-dependent DNA helicase RecG n=1 Tax=Thermohalobaculum xanthum TaxID=2753746 RepID=A0A8J7M4D7_9RHOB)

HSP 1 Score: 112 bits (281), Expect = 2.600e-25
Identity = 75/179 (41.90%), Postives = 108/179 (60.34%), Query Frame = 1 
Query:   76 VLYLSATPIPRSLALAAFGEVDVSQLSERPERGAAGEVETSVVPISRAGEVMARLKRLLDKGDPSTRVFWVVSRIDPSTGGGDGHGDDDDASGSRYQSNLGSAIERYDSLCVELGEERVSLLHGKMPADMKNSVLSSFSKPIGEGAGAGPSVLVTTSIIEVGVDVPAARICIVENAEMF 612
            +L ++ATPIPR+LALA +G++D+S L E+P       VET +V +SRA EV+ARLK +L +G    R +WV   ++ S           DAS      +L +   R+  L   LG E V+L+HG+MPAD K++ +++F       +G  P VLV T++IEVGVDVP A I ++E AE F
Sbjct:  418 LLVMTATPIPRTLALAGYGDLDISVLDEKPP--GRQPVETRLVSLSRADEVVARLKAVLAEG---RRAYWVCPAVEES-----------DAS------DLVAVETRHRLLADALGAEHVALVHGQMPADAKDAAMAAFQ------SGERP-VLVATTVIEVGVDVPEATIMVIEQAEHF 567
[Close]
BLAST of mRNA_S-ischiensis_contig92.20943.1 vs. uniprot
Match: A0A2U2CSQ8_9RHOB (ATP-dependent DNA helicase RecG n=1 Tax=Pelagicola sp. LXJ1103 TaxID=2175247 RepID=A0A2U2CSQ8_9RHOB)

HSP 1 Score: 112 bits (280), Expect = 3.540e-25
Identity = 70/182 (38.46%), Postives = 107/182 (58.79%), Query Frame = 1 
Query:   67 APHVLYLSATPIPRSLALAAFGEVDVSQLSERPERGAAGEVETSVVPISRAGEVMARLKRLLDKGDPSTRVFWVVSRIDPSTGGGDGHGDDDDASGSRYQSNLGSAIERYDSLCVELGEERVSLLHGKMPADMKNSVLSSFSKPIGEGAGAGPSVLVTTSIIEVGVDVPAARICIVENAEMF 612
            A  VL ++ATPIPRSL+LA +G++D+S L E+P       ++T+++ + R GEV+ RL+R +D G    + +WV   ++ S                    +L SA ER+  L   LGE  V L+HG+MP + K++ +++F +  GE A     VLV+T++IEVGVDVP A I ++E AE F
Sbjct:  415 AADVLVMTATPIPRSLSLAQYGDMDISVLDEKPP--GRKPIKTALIAMDRVGEVVERLRRAIDDG---RQAYWVCPLVEESE-----------------VVDLSSAEERFTRLRTALGEGNVGLVHGQMPPEQKDAAMAAFQR--GETA-----VLVSTTVIEVGVDVPNASIMVIERAESF 567
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig92.20943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXY9_9PHAE3.860e-4253.80ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
D7FPN7_ECTSI1.130e-3851.91ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
A0A836CEI0_9STRA5.900e-3445.65ATP-dependent DNA helicase RecG n=1 Tax=Tribonema ... [more]
A0A2D6M630_9PROT7.530e-2641.67ATP-dependent DNA helicase RecG n=2 Tax=Rhodospiri... [more]
A0A444LH41_9HYPH1.030e-2538.25ATP-dependent DNA helicase RecG n=1 Tax=Rhizobium ... [more]
A0A8G0T3Z6_9RHOB1.400e-2541.34ATP-dependent DNA helicase RecG n=1 Tax=Roseovariu... [more]
A0A1U9Z3N1_9HYPH1.910e-2538.04ATP-dependent DNA helicase RecG n=6 Tax=Hyphomicro... [more]
A0A1Q9AFP9_9HYPH1.920e-2538.59ATP-dependent DNA helicase RecG n=3 Tax=Rhizobium ... [more]
A0A8J7M4D7_9RHOB2.600e-2541.90ATP-dependent DNA helicase RecG n=1 Tax=Thermohalo... [more]
A0A2U2CSQ8_9RHOB3.540e-2538.46ATP-dependent DNA helicase RecG n=1 Tax=Pelagicola... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig92contigS-ischiensis_contig92:331243..336035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.5
Seed ortholog evalue2.1e-34
Seed eggNOG ortholog2880.D7FPN7
Preferred nameTREX2
KEGG rclassRC02795
KEGG koko:K02335,ko:K03655,ko:K10790,ko:K10791,ko:K10900,ko:K10905
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,ko03460,ko04623,map00230,map00240,map01100,map03030,map03410,map03420,map03440,map03460,map04623
GOsGO:0000002,GO:0000166,GO:0000266,GO:0000287,GO:0000738,GO:0001817,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005730,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006281,GO:0006298,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007005,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008296,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010033,GO:0010501,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017076,GO:0017111,GO:0019439,GO:0030554,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032404,GO:0032405,GO:0032407,GO:0032479,GO:0032552,GO:0032554,GO:0032558,GO:0033554,GO:0033955,GO:0034097,GO:0034641,GO:0034645,GO:0034655,GO:0035456,GO:0035458,GO:0036094,GO:0042175,GO:0042221,GO:0042623,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046483,GO:0046700,GO:0046872,GO:0046983,GO:0048285,GO:0050789,GO:0050896,GO:0051239,GO:0051716,GO:0065007,GO:0070013,GO:0070035,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0097367,GO:0098827,GO:0140097,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901576
EggNOG free text desc.exodeoxyribonuclease III activity
EggNOG OGsCOG0847@1,KOG0344@1,KOG0344@2759,KOG4793@2759
EC2.7.7.7,3.1.11.2,3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons5
Model size615
Cds size612
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig92.20943.1prot_S-ischiensis_contig92.20943.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig92 331244..336035 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817418.0143125-CDS-S-ischiensis_contig92:331243..3313001622817418.0143125-CDS-S-ischiensis_contig92:331243..331300Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 331244..331300 -
1695741100.1424358-CDS-S-ischiensis_contig92:331243..3313001695741100.1424358-CDS-S-ischiensis_contig92:331243..331300Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 331244..331300 -
1622817418.0278065-CDS-S-ischiensis_contig92:332077..3322141622817418.0278065-CDS-S-ischiensis_contig92:332077..332214Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 332078..332214 -
1695741100.1567461-CDS-S-ischiensis_contig92:332077..3322141695741100.1567461-CDS-S-ischiensis_contig92:332077..332214Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 332078..332214 -
1622817418.0417075-CDS-S-ischiensis_contig92:333762..3339041622817418.0417075-CDS-S-ischiensis_contig92:333762..333904Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 333763..333904 -
1695741100.1751733-CDS-S-ischiensis_contig92:333762..3339041695741100.1751733-CDS-S-ischiensis_contig92:333762..333904Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 333763..333904 -
1622817418.0545309-CDS-S-ischiensis_contig92:334888..3349781622817418.0545309-CDS-S-ischiensis_contig92:334888..334978Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 334889..334978 -
1695741100.1864297-CDS-S-ischiensis_contig92:334888..3349781695741100.1864297-CDS-S-ischiensis_contig92:334888..334978Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 334889..334978 -
1622817418.067422-CDS-S-ischiensis_contig92:335849..3360351622817418.067422-CDS-S-ischiensis_contig92:335849..336035Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 335850..336035 -
1695741100.1967413-CDS-S-ischiensis_contig92:335849..3360351695741100.1967413-CDS-S-ischiensis_contig92:335849..336035Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 335850..336035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig92.20943.1

>prot_S-ischiensis_contig92.20943.1 ID=prot_S-ischiensis_contig92.20943.1|Name=mRNA_S-ischiensis_contig92.20943.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=204bp
GGGSGGGVAGGKGGGSEAGFAFAPHVLYLSATPIPRSLALAAFGEVDVSQ
LSERPERGAAGEVETSVVPISRAGEVMARLKRLLDKGDPSTRVFWVVSRI
DPSTGGGDGHGDDDDASGSRYQSNLGSAIERYDSLCVELGEERVSLLHGK
MPADMKNSVLSSFSKPIGEGAGAGPSVLVTTSIIEVGVDVPAARICIVEN
AEMF
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mRNA from alignment at S-ischiensis_contig92:331243..336035-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig92.20943.1 ID=mRNA_S-ischiensis_contig92.20943.1|Name=mRNA_S-ischiensis_contig92.20943.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4793bp|location=Sequence derived from alignment at S-ischiensis_contig92:331243..336035- (Schizocladia ischiensis KU_0333)
GGCGGCGGCAGCGGCGGAGGAGTTGCAGGCGGAAAGGGGGGCGGTTCCGA
GGCGGGGTTTGCCTTTGCCCCCCACGTGCTCTACCTTTCTGCCACGCCCA
TACCCCGGTCGCTGGCACTGGCGGCCTTTGGCGAGGTGGACGTGAGCCAG
CTCAGTGAGAGACCCGAGAGGGGCGCAGCAGGCGAGGTAGGTGAACTGTA
CTGTAGTTAAGAAGACTGAGTTTGCGAAGCTCAGGTAGTTAGGAAGACTG
AATTTGTGAACCTCAAGTAGTTTAAGATGCTGAGTTTCGAGCACCCAAGT
AGTTAAGCGGACTGAGTTTCCAAAGCCCAAGTAGTTTAGGATGCTGAGTT
TCGAAAGCCTAAGTAGCTAAGCGGACTGAGTTTCAAAGCCCAAATAGTTT
AAGGTGCTGAGTTTCGAAAGTCCAAGTAGCTAAGCACACTGAGTTTCCGA
AGCTCAAGTAGTTTGGTCTCTGGCGCTGACGGCCTTTGGCGAGGTGGACG
TGAGCCAGCTGAGCGAGAGACCCGAGAGGGGCGGGGCAGGTGAGGTACGG
GAACTGTAATTAGGCGGACTGAGTTTCCAAAGCCCAAGTAGTTAAGCACA
CTGAGTTTCCGAAGCTCAAGTAGCTAGGTATCCTCCTGTAATACTTGACA
ACAATTCAAAGTGCACCAGTGCATACTGTAGCCAGCTCAGCGAGAGACCC
GAGAGGGGCGCGCCACTACCGTGCTGACTGCACCTCCATGTGCTCTGCTA
CACTGTTCGAGGGGCAAACTCTTTCAAACACTTCAATTACCGAAGTCGTA
CAGTACAGTACATACACTTGCTGGCTTACTGACCGCCAGATGTAGACGTC
CGTGCTTCTCATCAGCCGGGTTATACAGTACAGTACATGAACTTGCTTGC
TGACTGCACCTCCATGTGCTCTGCTGTGCTCTTCGAGTGGCAAACTCTTT
CAAACGCTTCAATTACCCACGTCGTACAGTACAATACTCGTACATTGCTC
ACAATACTTATACAGTAGTAGTACATTAACATGCTTGCTTACTCTGCTGA
CCGCCAGGTGGAGACGTCTGTGGTGCCCATCAGCCGGGCGGGGGAGGTGA
TGGCCAGGCTCAAACGCCTCCTGGACAAGGGAGACCCCAGCACAAGGGTG
AGACAATGCAGTTGTCGAAGTGTCTGTGCTGACAATAGCAGCAGTAGCAG
AAATACCTAAGGTGTAATGAAGGGAGCTAGAGATTCTCCGAGAGCCCTAG
GCTGAGAGTGCTACAAGGGGCTGTAAAGAGTCACATCACGTCACATGTTT
GTCACATCACATCACATGACACATCTGATTTACCCACTCAGTTCCGATGA
GCACACTCAGAGGCGTTCTACGCGGGGCGGGGGGTGAGAACCCTACATGA
GCGGCGGCCGCCGCTCACCTTGTTCTTGGGGACCACTTCGAAGTGCAGCA
CGCAACTTTGCCAACGTGTGCACGGCGATACGACCAGACGACGTGCAAAT
TGTCACGCGCCAATTAGCATTTGTTCTCGAGTTAGAGCTGGAAAGCCAAA
ACGGTGGCATGCAAGGAACCGGATGATTTGCCCGCCCCCCTCACGTAGAA
CACCTCTCAGCTTCACATGGGTGAGATTGTATATACCTCGTTACAATTTG
TGATGTGATGTGATGTGATGTTCACTCTAATTTGCTGTAGTTTGGCATCA
CATCACATCAATCTGTACGAGAACACTCAGTTTCACACAGGTGATTGTCC
GCTTGAGTATCCTCGCCAAGATCTACTTGAACCATCGGGATGCATCAAAT
CAACTAGCGCTACACCGCATCACAGCGCATTGCTATGACATCACATCGCA
TCACTATCACACCGCATCATGTCACATCACATCATATCTCGTTACACCAA
CCACATCGCGGCACATCACACCGCAGTCACACAACATCGCATCGCATCAC
ATCACATCACATCACGTCACGCCACTATCACATCACACCACATTACATCC
AATCACGTTACACCACACAGCATCGCATCACATGGCACCACACCACATCG
CATCACATATCATCAGATCACATCACAATCACAACACGTCAGTATCACAT
CACACCGCATCACAACACGACGTTGTGTCAGGTGTTCTGGGTGGTCTCCC
GCATAGACCCATCCACCGGCGGCGGTGATGGCCACGGTGACGATGACGAT
GCTAGCGGCAGCAGGTACCAGAGCAACCTGGGTTCCGCCATTGAGCGTTA
CGACAGCCTGTGCGTGGAGCTGGGTGAGTTGGAGAGAAGCGGCCGTGGAG
ATGACATTGCACACTGAGTGCACAATGTTTAGGACACGCTTCACTGAGTG
TGCAATATTTACTGTAGTACACTCTTCACTGAGTGTAAAATGCCATAGAG
CGTTACGACAGCCTGTGCGGGGAGCTGGGTGAGTTGGAGAGAAGCATTAT
AGTAGAATGTGTTATGACGTGCCCCCTAAAGGGAGTGTGTATAGTTTACA
TCACATCACATCACATTCTAGCGTGATGTGATGTGATGTGATGTGCCACT
GAGCGTTGCGAGAGCCTGTGTGCGGAGCTGGGTGAGTTGGAGAAAAGCGG
TACTACAGTAGTAGAACGTGTTGTGATGTGCCCTCTAAGGGAGCGTGTGT
AGTATGACATCATATCACATCACATTCTAACGTGATGTGATGTCGATGTG
ATGTGCCACTGGGTGCTACGAGAGCCTGTGTGCGGAACTGGGTGAGTTTG
AGAGAAGTGGTAGAATGTGATGTGATGTGCCCTCGAAGAGATTGTGTGTA
GATTGGCATTGCATCACATCATATTCTAGCGTGATGTGATGTGATGTGCC
ACTGAGCGTTACAAGAGCCTGTGTGAGCTGGGTGAGTTTCAGAGAAGCGG
CCACGCAGATGCTCAACGGCCTGTTCATCGGCTTGGGGGATGACGCTGTA
TAGACACTGTGTAGCCACTATACTGAAGAGAGTACTGTACTTTGCAGCAT
GTACGAGAACAGTATTTTGGAAAGGAACGAGAAAGGCGAGACGGTCTTTT
TTTTTTTTTTATTCTTTAACTTGACAACCACTAATGCGAAAACACTCAAG
AGTCATTTGACCTCGGGGGGGCGGGGAACGTTACATTTCCAATGCAAACT
TAGGTGGCCGGTATGACGAACACACATAGCACAGAACAACAACTTTGGGT
CCAGGAACAAGGAGATGGGCATGTGGACATGTTGAGAGCCTCAACTGAGG
CCAGGGGCATGTCACCGACACATCTCCATGAACTGTCTGAATGCACAACA
CATGTAGTGTTCAGGCCCTTCCCCCCCCCCCCTAAGGTCAAATGCCTCCA
ATTCTTACATGTGGTTAACCACTTGCTCGTACACGACAACACTCAATCTC
ACACACTTGCGATTGTACCTCGTGGCAATTCTATGAATCAATGCCGTGAA
AGTGAAACGGTCGCCGTGTGTTGTGCGATTGGATGCAACGCACGGGCGAG
GAGCGCGTGTCCCTGCTTCACGGGCAAATGCCTGCGGAGACGAAGAACAG
CGTCCTGTCAAACTTCACCAAGTCCAAGGCGAGGGGGCGGGCGCAGGTCC
GAACCGCCTAACCCTAACCCTAACCCTAGCCCTAACCCTACCCTAACCTG
ACGCAGGCGAGGAGTGCGTGTCCTTGCTTCACGGGAAAATGCCTGCGGAC
ATGAAGAACAGCGTCCTGTCCTCCTTCAGCAAGCCAATAGGCAAGGGAAA
GGGGGCAAGGCCGACCAACCTATAACCCTAACCCTAACCCTAACCCTAGC
CCTAACCCTAACCTGACACAGGCGAGGAGCGTGTGTCCCTGCTTCACGGG
AAAATGCCTGCGGACATGAAGAACAGCGTTCTGTCCTCCTTCAGCAAGCC
AATAGGCGAGGGGGCGGGGGCAGGGCCGAGCGTGCTGGTGACCACGAGCA
TCATCGAGGTAGCTTGTGACCGTACTTTGCTGTACTGTACTGTAGTGATC
CTCTTCAATGTGCTGCACTGTACTGTACTGCACTGTACTGTGCTGTACTG
TACAATGTTTGTACTGTTCTGTACAGTACTGTACTGTGCCGAATGTGCTC
GTGACCACCAGCATCATAGAGGTACGATTGTTGTGTGCTGTGCTGTGCTG
TGCTGTACTGTGAATGTTTGTACGGTTCATTACTGTACGAGTACTCGTAC
AACGTTTGTACTGTTCTGTACAGTACAGTACTGTACGTTACTGTACTGTA
CGGTACTGCAGTTTAGCGTACTGCACTGTACTGTACGCCCGGCAGGTGGG
TGTGGATGTGTCTGCGGCCCGCATCTGCATCGTGGAGAACGCTGAAATGT
TTGTTTTACTGCACTGTACTGTACTGTATTTTAATGTACTGTATCTGTAC
TTTACTGTACCGTACTGTACGCACGGCAGGTGGGTGTGGACGTACCTGCG
GCCACCATTTGCATCATATATATACTGTACTGTGCTGTACTTCACTGTAC
TCGTGTACTGCAATGTACCGCACTTTACTGGACTACACTGCACTTTACTG
TATGTTCCTGTACTGCACTGTACTGTACTGTACGCACAGCAAGTGGGTGT
GGACGTGCCTGCGGCCCGCATCTGCATCGTGGAGAACGCACTGCACTTTA
CTGTACTGTATTTTACTGTACTGTACTGTACTGTGCTGCACTTTACTGTA
TTTTCCTGTACTGTACTGTACTGTACACACGGCAGGTGGGTGTGGACGTG
CCTGCGGCCCGCATCTGCATCGTCGAGAACGCAGAAATGTTCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig92:331243..336035-

>mRNA_S-ischiensis_contig92.20943.1 ID=mRNA_S-ischiensis_contig92.20943.1|Name=mRNA_S-ischiensis_contig92.20943.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1224bp|location=Sequence derived from alignment at S-ischiensis_contig92:331243..336035- (Schizocladia ischiensis KU_0333)
GGCGGCGGCAGCGGCGGAGGAGTTGCAGGCGGAAAGGGGGGCGGTTCCGA
GGCGGGGTTTGCCTTTGCCCCCCACGTGCTCTACCTTTCTGCCACGCCCA
TACCCCGGTCGCTGGCACTGGCGGCCTTTGGCGAGGTGGACGTGAGCCAG
CTCAGTGAGAGACCCGAGAGGGGCGCAGCAGGCGAGGGCGGCGGCAGCGG
CGGAGGAGTTGCAGGCGGAAAGGGGGGCGGTTCCGAGGCGGGGTTTGCCT
TTGCCCCCCACGTGCTCTACCTTTCTGCCACGCCCATACCCCGGTCGCTG
GCACTGGCGGCCTTTGGCGAGGTGGACGTGAGCCAGCTCAGTGAGAGACC
CGAGAGGGGCGCAGCAGGCGAGGTGGAGACGTCTGTGGTGCCCATCAGCC
GGGCGGGGGAGGTGATGGCCAGGCTCAAACGCCTCCTGGACAAGGGAGAC
CCCAGCACAAGGGTGGAGACGTCTGTGGTGCCCATCAGCCGGGCGGGGGA
GGTGATGGCCAGGCTCAAACGCCTCCTGGACAAGGGAGACCCCAGCACAA
GGGTGTTCTGGGTGGTCTCCCGCATAGACCCATCCACCGGCGGCGGTGAT
GGCCACGGTGACGATGACGATGCTAGCGGCAGCAGGTACCAGAGCAACCT
GGGTTCCGCCATTGAGCGTTACGACAGCCTGTGCGTGGAGCTGGGTGTTC
TGGGTGGTCTCCCGCATAGACCCATCCACCGGCGGCGGTGATGGCCACGG
TGACGATGACGATGCTAGCGGCAGCAGGTACCAGAGCAACCTGGGTTCCG
CCATTGAGCGTTACGACAGCCTGTGCGTGGAGCTGGGCGAGGAGCGTGTG
TCCCTGCTTCACGGGAAAATGCCTGCGGACATGAAGAACAGCGTTCTGTC
CTCCTTCAGCAAGCCAATAGGCGAGGGGGCGGGGGCAGGGCCGAGCGTGC
TGGTGACCACGAGCATCATCGAGGCGAGGAGCGTGTGTCCCTGCTTCACG
GGAAAATGCCTGCGGACATGAAGAACAGCGTTCTGTCCTCCTTCAGCAAG
CCAATAGGCGAGGGGGCGGGGGCAGGGCCGAGCGTGCTGGTGACCACGAG
CATCATCGAGGTGGGTGTGGACGTGCCTGCGGCCCGCATCTGCATCGTCG
AGAACGCAGAAATGTTCGTGGGTGTGGACGTGCCTGCGGCCCGCATCTGC
ATCGTCGAGAACGCAGAAATGTTC
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