mRNA_S-ischiensis_contig92.20946.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig92.20946.1
Unique NamemRNA_S-ischiensis_contig92.20946.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig92.20946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig92contigS-ischiensis_contig92:355216..357573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size390
Cds size384
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig92.20946.1prot_S-ischiensis_contig92.20946.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig92 355216..357568 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817415.9658778-CDS-S-ischiensis_contig92:355215..3553281622817415.9658778-CDS-S-ischiensis_contig92:355215..355328Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 355216..355328 -
1695741098.425589-CDS-S-ischiensis_contig92:355215..3553281695741098.425589-CDS-S-ischiensis_contig92:355215..355328Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 355216..355328 -
1622817415.9796946-CDS-S-ischiensis_contig92:357297..3575681622817415.9796946-CDS-S-ischiensis_contig92:357297..357568Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 357298..357568 -
1695741098.4468226-CDS-S-ischiensis_contig92:357297..3575681695741098.4468226-CDS-S-ischiensis_contig92:357297..357568Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 357298..357568 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817415.9929101-UTR-S-ischiensis_contig92:357568..3575731622817415.9929101-UTR-S-ischiensis_contig92:357568..357573Schizocladia ischiensis KU_0333UTRS-ischiensis_contig92 357569..357573 -
1695741098.4610906-UTR-S-ischiensis_contig92:357568..3575731695741098.4610906-UTR-S-ischiensis_contig92:357568..357573Schizocladia ischiensis KU_0333UTRS-ischiensis_contig92 357569..357573 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig92.20946.1

>prot_S-ischiensis_contig92.20946.1 ID=prot_S-ischiensis_contig92.20946.1|Name=mRNA_S-ischiensis_contig92.20946.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=128bp
MGCLRPTLAWVLLLPIGQVASLAMVAPRVPRLALAEALCRYRAPCLQPRL
HRRPGRFARSDAPWRHLCLVHAGAQGYHNGRPLGICASVAGGGASTSAWC
GARLTRPPRVINHAVGIGASGISGISPP
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mRNA from alignment at S-ischiensis_contig92:355216..357573-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig92.20946.1 ID=mRNA_S-ischiensis_contig92.20946.1|Name=mRNA_S-ischiensis_contig92.20946.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2358bp|location=Sequence derived from alignment at S-ischiensis_contig92:355216..357573- (Schizocladia ischiensis KU_0333)
GGGGAATGGGCTGCCTCAGGCCGACGCTGGCTTGGGTCTTGCTTTTGCCG
ATAGGGCAGGTCGCGTCATTGGCCATGGTCGCCCCCCGGGTACCGCGGCT
GGCGCTAGCGGAGGCGCTCTGCCGGTACCGCGCGCCTTGCCTGCAGCCAC
GGCTGCACCGTCGACCGGGCCGGTTTGCGAGGAGCGATGCCCCGTGGCGA
CACTTGTGCCTTGTGCACGCTGGCGCCCAAGGGTACCATAACGGGCGGCC
TCTGGGGATCTGCGCATCTGTCGCAGGTCCGTGTAGGAAACACATGTTTT
TAACATATCGAACTGCCCAGGCTTTGTGTGCTGTGTGTGAATAGCTTCGC
ACAGTGCTAGCCCGCAGGCAGGTCCTACCGGCACTGTTGTGGTGGATAGT
CCTGTTGGAGGTGCTATCCGCCTTGTGTATGTGTGAGTGTGCGCGCGCGC
GCGCGCGCGTGTGTGTGTGTGCGCGCGCGCGTGCGTGCATACATGCATGT
GTGCGTGCGTGCGTGTGCGTGTTGGAGGACCACGTAACTCACGGTCAGTG
TGTGTGCGCGCGCGCGCACACATGTGTGTGTGGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCG
CGCGCGCACGCGTGTGCGTGCGTGTGTGTCAGGGCTGGAGCCTGTGCCTG
AGTCAGGCCTTGGACATGATGGTTGATGCGGCAGACTGATAGTTATACCA
TTGAAGCAATGCGAGGTGCTCTGGCTGTACTTTGTAGTACATATATGTAC
TCGTTGGCTTGTCTTGCGACATAAACTTGCGTGCAATGCCGACAGCCCTA
AGTCGAAACTTCGGGTTTTTGTAGTACTTGCAATATGTTCGAGCAACGCG
AGGTGCTCTGGCTGTAGTTTGTAGTACTTCAAAGTACTTGCAACTGGCCC
ACAAGAGTTGCACACAACACGCGACATCTTTTCGATTTCAACGACAACGG
CTAGTATACCTGTAGATAAACGCAAGCCTTGTACACGAATGCCGCAGAAC
CTCAACTACAGCTTCGAAGTATGTGCTTGAGTAGTACTTCAAAGTGCTTG
AATTGTGTACCGAACGTGCAGTACAGCACTACACGAGTACTGCTACGCAT
GCATATATGTGTATGTACGTTCGTCCTACATAATCTAGTACAGTAGTACA
AATACTTGCAGTATTTCAAAATATACGATTTATGTACACACATATACTGT
AGTTCGAAGCACGTGTGCATATGTACGAGTTCGTAGTAGTGCCCAAACGC
TTGGAACGGTATGGTGCATGCGCATGCGTTCAAGTCTGTGCACCACAGTA
CACTGCCGCATATGTGCTCGTACTGCAGGGTGCATAGAAAACAGATTGGA
CGATTAACACAAAGGAGTACAAGTATTGTACCTGTCGAGATATGTGTGCT
GGCTCGATATAAACTCGTTAATGTAGCACGTGGTATATGCACTTTGTACA
GTGGTAGTTTTGTACTTCCAAGTACCACTGTAGTGTACAGTAGTACGAGT
GCATTGCAATAGTGCAAATCCAAGGGGTGGTTGCTTGTCTCAGTGTCTTG
CAAGGCTGCATTGTGGGTACAGCGCCTGCGAGAATGTCACGATGCTGAGA
GGAATCCCACAGTACAGCTAGTGTCCATTCCGCGCCGGTGCGGTGGTTCA
GATGGATCCCAACAAAACCGCATGCGAGAATAATAGCAGCAGGAGTAATC
TCACAGCTGGCTTAAGCAAGCGCAAATACACACTGCCGCCGCCACCACCA
CCACCACCGCCGCCGCCACCACCACCACCACCACCACAACCACCACCACC
AGTGGAGCTGTGTTGGAGAGCAACCCAAACCCAGTGATTGAGCTCTGCAG
CTGCTGCAAAAACAGAGATTCCAAGTACACATGTACATGATGGTGAAACA
CCGAGCACGTCTTAAAACCGAGCTTCCAACTTCTCACTCAACAGCAGCAG
CAGTGCAATGCCGGCAACAACACCCAAATCCCCCCCCGCCCCCTTTTTCT
TCCCCCCTCCCTCCTTGTTCTTAGTTCCTTGATGTTATAATCACTAATAT
AAACACACTCAATTCTTAAATGGGACAACTACTCACACCAGAACACTCAA
TCTCACACATATGCGATTGTACCTCGTTGCAATTCATATGAATCATCATT
ACCCAGTGGCTGTTTGCTCCCCCCTTCATGCCCTTCACGACCCAGGCGGG
GGCGCCAGCACCAGCGCTTGGTGCGGAGCTCGCCTCACTCGCCCCCCCCG
TGTCATCAACCATGCCGTCGGGATTGGCGCATCAGGAATATCAGGAATAT
CGCCTCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig92:355216..357573-

>mRNA_S-ischiensis_contig92.20946.1 ID=mRNA_S-ischiensis_contig92.20946.1|Name=mRNA_S-ischiensis_contig92.20946.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=768bp|location=Sequence derived from alignment at S-ischiensis_contig92:355216..357573- (Schizocladia ischiensis KU_0333)
ATGGGCTGCCTCAGGCCGACGCTGGCTTGGGTCTTGCTTTTGCCGATAGG
GCAGGTCGCGTCATTGGCCATGGTCGCCCCCCGGGTACCGCGGCTGGCGC
TAGCGGAGGCGCTCTGCCGGTACCGCGCGCCTTGCCTGCAGCCACGGCTG
CACCGTCGACCGGGCCGGTTTGCGAGGAGCGATGCCCCGTGGCGACACTT
GTGCCTTGTGCACGCTGGCGCCCAAGGGTACCATAACGGGCGGCCTCTGG
GGATCTGCGCATCTGTCGCAGATGGGCTGCCTCAGGCCGACGCTGGCTTG
GGTCTTGCTTTTGCCGATAGGGCAGGTCGCGTCATTGGCCATGGTCGCCC
CCCGGGTACCGCGGCTGGCGCTAGCGGAGGCGCTCTGCCGGTACCGCGCG
CCTTGCCTGCAGCCACGGCTGCACCGTCGACCGGGCCGGTTTGCGAGGAG
CGATGCCCCGTGGCGACACTTGTGCCTTGTGCACGCTGGCGCCCAAGGGT
ACCATAACGGGCGGCCTCTGGGGATCTGCGCATCTGTCGCAGGCGGGGGC
GCCAGCACCAGCGCTTGGTGCGGAGCTCGCCTCACTCGCCCCCCCCGTGT
CATCAACCATGCCGTCGGGATTGGCGCATCAGGAATATCAGGAATATCGC
CTCCCGCGGGGGCGCCAGCACCAGCGCTTGGTGCGGAGCTCGCCTCACTC
GCCCCCCCCGTGTCATCAACCATGCCGTCGGGATTGGCGCATCAGGAATA
TCAGGAATATCGCCTCCC
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