mRNA_S-ischiensis_contig92.20939.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig92.20939.1
Unique NamemRNA_S-ischiensis_contig92.20939.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig92.20939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig92contigS-ischiensis_contig92:226811..228509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size383
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817415.919798-CDS-S-ischiensis_contig92:226810..2269091622817415.919798-CDS-S-ischiensis_contig92:226810..226909Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 226811..226909 +
1695741098.4039817-CDS-S-ischiensis_contig92:226810..2269091695741098.4039817-CDS-S-ischiensis_contig92:226810..226909Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 226811..226909 +
1622817415.933562-CDS-S-ischiensis_contig92:228226..2285081622817415.933562-CDS-S-ischiensis_contig92:228226..228508Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 228227..228508 +
1695741098.4146335-CDS-S-ischiensis_contig92:228226..2285081695741098.4146335-CDS-S-ischiensis_contig92:228226..228508Schizocladia ischiensis KU_0333CDSS-ischiensis_contig92 228227..228508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig92.20939.1prot_S-ischiensis_contig92.20939.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig92 226811..228508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig92.20939.1

>prot_S-ischiensis_contig92.20939.1 ID=prot_S-ischiensis_contig92.20939.1|Name=mRNA_S-ischiensis_contig92.20939.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=127bp
RNTPHFRRLCTRMSQERPSDAEIEELRARLKVQEELVAELLAAQEAQERG
RRHHQEYAALATGTAHPQPTEPGLPRAATTATAVVQAALVHGPGPSPGPG
RDGGGATVTGGGGGGGGGNDSDGDGDG
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mRNA from alignment at S-ischiensis_contig92:226811..228509+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig92.20939.1 ID=mRNA_S-ischiensis_contig92.20939.1|Name=mRNA_S-ischiensis_contig92.20939.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1699bp|location=Sequence derived from alignment at S-ischiensis_contig92:226811..228509+ (Schizocladia ischiensis KU_0333)
CGCAATACGCCGCACTTCAGGCGTCTGTGCACCAGGATGAGCCAGGAACG
GCCCTCTGATGCGGAAATCGAGGAGCTCAGGGCGAGGCTCAAGGTCCAGG
TAAGCGCATGATCTCGCCAGGTGTGACTGGAATCGCGTTTGTTGGGGAGA
CTTCTCGTGTCCCTGCCTTGTAACTGTAGGCGCATTTCGCCGTTTCCGCA
ACCGGTGCACGCGGCGACAGTTCTTGAAAATGTGCGTGCGCCTTCCTATG
ATGTAAGGGCTTAGCTTTTTAGCTAAGCGACAGTTCTTGAATATGTGCGT
GCGCCTTCCTATGCTGCAAGGGCCTAGCTGGGATAGCTGTCGTGAACGTT
GTTGCAACTCGCAAGCCCCCGTCACCGTGCCCAGCTTAACCATGGCACAA
AAATGTGATCGCTATTTTTGGTGCCCGGGCCGCCCTATGAAGGAAGCATC
GGATGATGTGAAATTTTGACACATGAAAGAGCTCGACGAGTACGTTCATT
TGCGCTACAGTATTTGTATCACAACATCACATGGACCGAGCAACAGGTCA
ATCGATATTCGACAACACTATTTGGGCGAAAACAATCGCAATTTTGTGCC
ATGGTTAGCCCAGCTGGTGGGGGTATGCTACAGCAGTGCCATCTTGCCAT
GAACGAGAAGTCCCGGGCTGGGTACCTACTTCTGTGCACACGCTCTTCGA
TACTGGGAAGCCACTCCTGCATTGAAATATGCCGCTCATGAGTTAAAATG
TTAAAAGTGCTGCACTTCGAAGTATGCGACCGAGCCATTGTCTGTAAAAC
TTTGCGATTGCTGAGCTCAGATCTGAAGAGTGGTCAGGAGGTGGACACAG
TATCACAGCGTGCCCGTTCTCACGGTTTGCCCTAGTTGCCAGCCCAACCG
CCTCGCCTGTGGCCCCCCCAGGAGGAGCTAGTGGCAGAACTCCTGGCCGC
CCAGGAGGCACAGGAGCGAGGCCGACGCCACCAATAGGAGGGCCGTGTAG
TAGCAGTAGTAGTAAGTAGTAGCAATAGTAGTAGCAGTACTATTAGTACT
ACAACTCGAGCACTACTACTTGCTACTACCAAGTACGAAGTACTGTAGTA
CTAGTACTCTTACTACTACTCGTACTAGCACTACTCAAGTGCTCGCGTTT
TTTCTCCCGGCTGCAGGAGGAGCTAGTGGCGGAGCTCCTGGCCGCCCAAG
AAGCCCAGGAGCGGGGCCGGCGCCACCACCAGGAGTACGCCGCCATGTTC
CTACTACACAGTGTTCTACACTGTAAATAACGAAATGTTCTGTACTGCAC
GCACTTGGAAGTGTACAACTGTACAGTACAGTGCTGTAGTTTCACGGCAC
ATCACAGTGTGCCCTTTCTCACGCCATAGTCGCCAAACGCAAACGCCTCC
CATGTGGGCCCTCCAGGAGGAGCTAGTGGCAGAGCTCCTGGCCGCCCAAG
AGGCCCAGGAGAGGGGCCGACGCCACCACCAGGAGTACGCCGCACTCGCC
ACCGGAACAGCTCACCCACAGCCAACAGAGCCAGGTCTCCCTCGCGCAGC
GACAACAGCCACGGCAGTAGTGCAGGCAGCGCTTGTACACGGCCCCGGCC
CCAGCCCCGGCCCCGGCAGGGACGGGGGGGGGGCGACGGTCACCGGCGGC
GGCGGCGGCGGCGGCGGCGGCAATGACAGTGATGGAGATGGAGATGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig92:226811..228509+

>mRNA_S-ischiensis_contig92.20939.1 ID=mRNA_S-ischiensis_contig92.20939.1|Name=mRNA_S-ischiensis_contig92.20939.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=762bp|location=Sequence derived from alignment at S-ischiensis_contig92:226811..228509+ (Schizocladia ischiensis KU_0333)
CGCAATACGCCGCACTTCAGGCGTCTGTGCACCAGGATGAGCCAGGAACG
GCCCTCTGATGCGGAAATCGAGGAGCTCAGGGCGAGGCTCAAGGTCCAGC
GCAATACGCCGCACTTCAGGCGTCTGTGCACCAGGATGAGCCAGGAACGG
CCCTCTGATGCGGAAATCGAGGAGCTCAGGGCGAGGCTCAAGGTCCAGGA
GGAGCTAGTGGCAGAGCTCCTGGCCGCCCAAGAGGCCCAGGAGAGGGGCC
GACGCCACCACCAGGAGTACGCCGCACTCGCCACCGGAACAGCTCACCCA
CAGCCAACAGAGCCAGGTCTCCCTCGCGCAGCGACAACAGCCACGGCAGT
AGTGCAGGCAGCGCTTGTACACGGCCCCGGCCCCAGCCCCGGCCCCGGCA
GGGACGGGGGGGGGGCGACGGTCACCGGCGGCGGCGGCGGCGGCGGCGGC
GGCAATGACAGTGATGGAGATGGAGATGGGGAGGAGCTAGTGGCAGAGCT
CCTGGCCGCCCAAGAGGCCCAGGAGAGGGGCCGACGCCACCACCAGGAGT
ACGCCGCACTCGCCACCGGAACAGCTCACCCACAGCCAACAGAGCCAGGT
CTCCCTCGCGCAGCGACAACAGCCACGGCAGTAGTGCAGGCAGCGCTTGT
ACACGGCCCCGGCCCCAGCCCCGGCCCCGGCAGGGACGGGGGGGGGGCGA
CGGTCACCGGCGGCGGCGGCGGCGGCGGCGGCGGCAATGACAGTGATGGA
GATGGAGATGGG
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