prot_S-ischiensis_contig91.20903.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig91.20903.1
Unique Nameprot_S-ischiensis_contig91.20903.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length212
Homology
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BLAST of mRNA_S-ischiensis_contig91.20903.1 vs. uniprot
Match: A0A7R9YGN8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YGN8_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.610e-5
Identity = 30/121 (24.79%), Postives = 60/121 (49.59%), Query Frame = 0 
Query:   71 EERISLYEFVIEVPGTVTRETKKRVYREVGKNININGFRPGEIPIFMQPQLFEFTITEIIQDTLLSAVEGHGL--------ELLEGAQAGDADIEED-IKEMRREFTPGQPMVYTAKIALR 182
            ++ +++Y    EVP       +  + R+ G+ +NI GFR G+IP FM+ ++  F   E +Q ++  A+  + L        E+ E       + EE+ +  + +E+ P  P+ +  K+A +
Sbjct:   67 DDEVAIYVIDAEVPAKTMESLRNNLERQWGREMNIPGFRKGQIPPFMKAEVLRFVCREAVQQSMFDALGLYDLSPTLQDDQEMYEFVSVNGMEKEEEWMPVLSQEWKPKSPLTFHMKVAAK 187
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig91.20903.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7R9YGN8_9STRA2.610e-524.79Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 146..166
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..211
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.625
IPR036611Trigger factor ribosome-binding domain superfamilyGENE3D3.30.70.1050coord: 66..182
e-value: 2.1E-8
score: 36.3
IPR036611Trigger factor ribosome-binding domain superfamilySUPERFAMILY102735Trigger factor ribosome-binding domaincoord: 77..180
IPR008881Trigger factor, ribosome-binding, bacterialPFAMPF05697Trigger_Ncoord: 75..184
e-value: 1.6E-8
score: 35.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig91contigS-ischiensis_contig91:198712..204409 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig91.20903.1mRNA_S-ischiensis_contig91.20903.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig91 198144..204449 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig91.20903.1 ID=prot_S-ischiensis_contig91.20903.1|Name=mRNA_S-ischiensis_contig91.20903.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=212bp
MKHAAVFALGCAIVNTSSAFCPLTPLPVRSRWAWAGSGRPVARARQVLCM
QQLKQQMEGVKVTHLEAVDEEERISLYEFVIEVPGTVTRETKKRVYREVG
KNININGFRPGEIPIFMQPQLFEFTITEIIQDTLLSAVEGHGLELLEGAQ
AGDADIEEDIKEMRREFTPGQPMVYTAKIALRAKEPKSVIESTITGSATS
DDEDDNDAVDE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036611Trigger_fac_ribosome-bd_sf
IPR008881Trigger_fac_ribosome-bd_bac