mRNA_S-ischiensis_contig11.2210.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2210.1
Unique NamemRNA_S-ischiensis_contig11.2210.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:2008947..2009969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size1024
Cds size1023
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.6518881-CDS-S-ischiensis_contig11:2008946..20099691622815583.6518881-CDS-S-ischiensis_contig11:2008946..2009969Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2008947..2009969 +
1695739784.8165047-CDS-S-ischiensis_contig11:2008946..20099691695739784.8165047-CDS-S-ischiensis_contig11:2008946..2009969Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2008947..2009969 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2210.1prot_S-ischiensis_contig11.2210.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 2008947..2009969 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2210.1

>prot_S-ischiensis_contig11.2210.1 ID=prot_S-ischiensis_contig11.2210.1|Name=mRNA_S-ischiensis_contig11.2210.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=341bp
MHHPFKVLARCLGKTGHSRWRSALRLAWWSLRRFMRTGAAGSVSRKRRSG
ARKSQRRRRSGLPPGAEAGGRERALARARAFQRRQENMATNPRAVGTGAT
EIRRWIRLPTLQGRTRTSRPSCSFHGRFSWRGPGRRERALPQSARARTAL
LLWSKPETPRGKTCACLPSSRMRNTPGRRLKHGLIGTTKSLPPPPRSSAA
GQTWASCGSTSPGNPWTPGHGPWLSFARTRRSCCPASPPAESRGPPWASP
LSPTCGTSPGTPGRARTSPSCAWAGPRCTCCSRAARPRRPCTTWRPARTS
SGTWRTGQRLLCKQRGRTPPRAPLPPPHVPLSPVTPLPLLP
back to top

mRNA from alignment at S-ischiensis_contig11:2008947..2009969+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2210.1 ID=mRNA_S-ischiensis_contig11.2210.1|Name=mRNA_S-ischiensis_contig11.2210.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1023bp|location=Sequence derived from alignment at S-ischiensis_contig11:2008947..2009969+ (Schizocladia ischiensis KU_0333)
ATGCATCATCCATTCAAAGTGTTGGCACGATGCCTTGGCAAGACCGGGCA
TTCGCGTTGGCGATCGGCTTTGCGATTGGCCTGGTGGTCACTGCGGCGGT
TTATGAGGACCGGGGCAGCCGGATCCGTCTCGAGAAAGAGGAGAAGCGGG
GCAAGAAAAAGCCAAAGAAGGAGGAGAAGCGGGCTTCCGCCTGGGGCAGA
AGCTGGTGGACGGGAAAGGGCACTGGCGAGAGCGCGAGCCTTCCAGAGAA
GGCAAGAAAACATGGCCACAAATCCAAGGGCCGTAGGCACAGGAGCCACA
GAGATAAGGCGCTGGATTCGTTTGCCCACGCTGCAGGGGCGGACTCGCAC
ATCTCGACCGTCCTGCTCCTTCCACGGGAGGTTTTCATGGCGAGGGCCTG
GACGGCGAGAGAGGGCCTTGCCGCAGTCGGCGCGAGCCAGGACAGCTTTG
TTACTCTGGAGCAAGCCCGAGACTCCGCGGGGAAAGACCTGCGCGTGCTT
GCCATCATCCAGGATGAGGAACACCCCCGGCAGGCGCCTGAAGCATGGCC
TCATTGGCACGACCAAGAGCTTGCCGCCGCCGCCTCGTTCCTCAGCAGCC
GGCCAGACCTGGGCTTCGTGTGGTTCGACCTCCCCTGGCAATCCCTGGAC
GCCAGGGCACGGGCCCTGGCTCTCCTTCGCGCGGACGAGGCGCTCATGCT
GCCCCGCATCACCGCCTGCCGAGAGCCGGGGGCCCCCGTGGGCTTCGCCA
CTTTCACCAACCTGCGGCACTTCTCCCGGGACCCCGGGTCGCGCGCGGAC
TTCGCCGTCTTGTGCCTGGGCAGGGCCAAGATGCACGTGTTGCTCAAGGG
CGGCCCGGCCCCGCCGGCCCTGCACGACCTGGCGCCCGGCACGGACAAGC
TCGGGGACCTGGCGCACCGGGCAGCGGCTGCTCTGCAAGCAGCGTGGGCG
AACCCCCCCGCGGGCACCACTGCCACCACCGCATGTTCCCCTGAGCCCGG
TGACGCCGCTGCCACTACTACCA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig11:2008947..2009969+

>mRNA_S-ischiensis_contig11.2210.1 ID=mRNA_S-ischiensis_contig11.2210.1|Name=mRNA_S-ischiensis_contig11.2210.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2046bp|location=Sequence derived from alignment at S-ischiensis_contig11:2008947..2009969+ (Schizocladia ischiensis KU_0333)
ATGCATCATCCATTCAAAGTGTTGGCACGATGCCTTGGCAAGACCGGGCA
TTCGCGTTGGCGATCGGCTTTGCGATTGGCCTGGTGGTCACTGCGGCGGT
TTATGAGGACCGGGGCAGCCGGATCCGTCTCGAGAAAGAGGAGAAGCGGG
GCAAGAAAAAGCCAAAGAAGGAGGAGAAGCGGGCTTCCGCCTGGGGCAGA
AGCTGGTGGACGGGAAAGGGCACTGGCGAGAGCGCGAGCCTTCCAGAGAA
GGCAAGAAAACATGGCCACAAATCCAAGGGCCGTAGGCACAGGAGCCACA
GAGATAAGGCGCTGGATTCGTTTGCCCACGCTGCAGGGGCGGACTCGCAC
ATCTCGACCGTCCTGCTCCTTCCACGGGAGGTTTTCATGGCGAGGGCCTG
GACGGCGAGAGAGGGCCTTGCCGCAGTCGGCGCGAGCCAGGACAGCTTTG
TTACTCTGGAGCAAGCCCGAGACTCCGCGGGGAAAGACCTGCGCGTGCTT
GCCATCATCCAGGATGAGGAACACCCCCGGCAGGCGCCTGAAGCATGGCC
TCATTGGCACGACCAAGAGCTTGCCGCCGCCGCCTCGTTCCTCAGCAGCC
GGCCAGACCTGGGCTTCGTGTGGTTCGACCTCCCCTGGCAATCCCTGGAC
GCCAGGGCACGGGCCCTGGCTCTCCTTCGCGCGGACGAGGCGCTCATGCT
GCCCCGCATCACCGCCTGCCGAGAGCCGGGGGCCCCCGTGGGCTTCGCCA
CTTTCACCAACCTGCGGCACTTCTCCCGGGACCCCGGGTCGCGCGCGGAC
TTCGCCGTCTTGTGCCTGGGCAGGGCCAAGATGCACGTGTTGCTCAAGGG
CGGCCCGGCCCCGCCGGCCCTGCACGACCTGGCGCCCGGCACGGACAAGC
TCGGGGACCTGGCGCACCGGGCAGCGGCTGCTCTGCAAGCAGCGTGGGCG
AACCCCCCCGCGGGCACCACTGCCACCACCGCATGTTCCCCTGAGCCCGG
TGACGCCGCTGCCACTACTACCAATGCATCATCCATTCAAAGTGTTGGCA
CGATGCCTTGGCAAGACCGGGCATTCGCGTTGGCGATCGGCTTTGCGATT
GGCCTGGTGGTCACTGCGGCGGTTTATGAGGACCGGGGCAGCCGGATCCG
TCTCGAGAAAGAGGAGAAGCGGGGCAAGAAAAAGCCAAAGAAGGAGGAGA
AGCGGGCTTCCGCCTGGGGCAGAAGCTGGTGGACGGGAAAGGGCACTGGC
GAGAGCGCGAGCCTTCCAGAGAAGGCAAGAAAACATGGCCACAAATCCAA
GGGCCGTAGGCACAGGAGCCACAGAGATAAGGCGCTGGATTCGTTTGCCC
ACGCTGCAGGGGCGGACTCGCACATCTCGACCGTCCTGCTCCTTCCACGG
GAGGTTTTCATGGCGAGGGCCTGGACGGCGAGAGAGGGCCTTGCCGCAGT
CGGCGCGAGCCAGGACAGCTTTGTTACTCTGGAGCAAGCCCGAGACTCCG
CGGGGAAAGACCTGCGCGTGCTTGCCATCATCCAGGATGAGGAACACCCC
CGGCAGGCGCCTGAAGCATGGCCTCATTGGCACGACCAAGAGCTTGCCGC
CGCCGCCTCGTTCCTCAGCAGCCGGCCAGACCTGGGCTTCGTGTGGTTCG
ACCTCCCCTGGCAATCCCTGGACGCCAGGGCACGGGCCCTGGCTCTCCTT
CGCGCGGACGAGGCGCTCATGCTGCCCCGCATCACCGCCTGCCGAGAGCC
GGGGGCCCCCGTGGGCTTCGCCACTTTCACCAACCTGCGGCACTTCTCCC
GGGACCCCGGGTCGCGCGCGGACTTCGCCGTCTTGTGCCTGGGCAGGGCC
AAGATGCACGTGTTGCTCAAGGGCGGCCCGGCCCCGCCGGCCCTGCACGA
CCTGGCGCCCGGCACGGACAAGCTCGGGGACCTGGCGCACCGGGCAGCGG
CTGCTCTGCAAGCAGCGTGGGCGAACCCCCCCGCGGGCACCACTGCCACC
ACCGCATGTTCCCCTGAGCCCGGTGACGCCGCTGCCACTACTACCA
back to top