mRNA_S-ischiensis_contig90.20882.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig90.20882.1
Unique NamemRNA_S-ischiensis_contig90.20882.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig90.20882.1 vs. uniprot
Match: D7FXR8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR8_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 9.780e-20
Identity = 65/186 (34.95%), Postives = 96/186 (51.61%), Query Frame = 2 
Query:   11 IYSYVLAPSLFSFGLREVNDDTPAYNGEGIYLGTSSSQWCSDIARNGMDRSQYNRIYSNNIKTFMSEGIDVKEGASLNEIYNNRVRKSVQETTGGIQIRGDNNHVYENQVTGCTTAGVRIGGSTTAKAGGGSYQWGKNNKVTDNVLDNNLNGPVKVMVAPQAEICGNSCSTGRCDPTVLSSKDDEL 568
            I + V+  ++ + G+ +   ++   NGEG+Y+GTSS+QW      NG D    N +  N I T  +E +D+KEGAS N I +N   + +   +G    RGD N    N  T C  AGVR+GG          +Q+G  N V  N  +    G +KV+V  Q +ICGN+C  G C    L  +DD++
Sbjct:  179 INAQVMGNTISNCGVHDYMFNSGDKNGEGVYIGTSSTQWT-----NGEDTCNDNLVSGNRISTSGNECVDIKEGASGNVIEDNICSEQLDAESGCYDSRGDGNTFRYNVGTDCMGAGVRLGGWEVD-----GHQYGVGNSVYGNDFNAVGEGALKVLVGEQGDICGNTCEDGSCS---LVGEDDDV 351
[Close]
BLAST of mRNA_S-ischiensis_contig90.20882.1 vs. uniprot
Match: A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.480e-19
Identity = 65/167 (38.92%), Postives = 92/167 (55.09%), Query Frame = 2 
Query:   14 YSYVLAPSLFSFGLREVNDDTPAYNGEGIYLGTSSSQWCSDIARNGM-DRSQYNRIYSNNIKTFMSEGIDVKEGASLNEIYNNRVRKSVQETTGGIQIRGDNNHVYENQVTGCTTAGVRIGGSTTAKAGGGSYQWGKNNKVTDNVLDNNLNGPVKVMVAPQAEICGN 511
            Y+ V +  +   G+ +  +D    NGEG+Y+GTSSSQW +D   + + D    N I  N I+T  +EGIDVKEG+    I  N V     + +GGI  RGD + +  N +     AGVR+GG T       S ++GKNN+V  N + +  +  VKVMV PQ +IC N
Sbjct:  185 YAEVYSNHITDCGIFDFREDGDGKNGEGVYVGTSSSQWDNDNNWDDVPDACMGNIIRDNYIRTRGNEGIDVKEGSVDTLIEYNEVYMQYDDDSGGIGSRGDRSIIRYNHIEDTDGAGVRLGGHTVD-----STEYGKNNQVYGNTMVDCRHSAVKVMVDPQGQICDN 346
[Close]
BLAST of mRNA_S-ischiensis_contig90.20882.1 vs. uniprot
Match: D7G3L7_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L7_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 7.110e-19
Identity = 63/177 (35.59%), Postives = 93/177 (52.54%), Query Frame = 2 
Query:   14 YSYVLAPSLFSFGLREVNDDTPAYNGEGIYLGTSSSQWCSDIARNGMDR---SQYNRIYSNNIKTFMSEGIDVKEGASLNEIYNNRVRKSVQETTGGIQIRGDNNHVYENQVTGCTTAGVRIGGSTTAKAGGGSYQWGKNNKVTDNVLDNNLNGPVKVMVAPQAEICGNSCSTGRCD 535
            YS V    + + G  +   D  + NGEGIYLGTSS+QW  D  +N  D    S YN  + N+  T  +EGID+KEG+  N + +N         +  +  RGD+N    N       AG+RIGG    K  G  +Q+G+NN+V +N+L+NN    +K+ ++PQ  +C N     + D
Sbjct:  179 YSQVYNNRITNCGTHDFVMDGGSKNGEGIYLGTSSNQW--DDGKNPSDEPDESSYNHFFKNHFDTQGNEGIDIKEGSRYNIVEDNYCTGQKDPNSACLDARGDSNIFRFNTCEDNLGAGIRIGGH---KIDG--HQYGQNNEVYENLLENNDYAGIKITMSPQGAVCSNDILGSKYD 348
[Close]
BLAST of mRNA_S-ischiensis_contig90.20882.1 vs. uniprot
Match: D7FXR9_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR9_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 2.180e-18
Identity = 64/188 (34.04%), Postives = 95/188 (50.53%), Query Frame = 2 
Query:   11 IYSYVLAPSLFSFGLREVNDDTPAYNGEGIYLGTSSSQWCSDIARNGMDRSQYNRIYSNNIKTFMSEGIDVKEGASLNEIYNNRVRKSVQETTGGIQIRGDNNHVYENQVTGCTTAGVRIGGSTTAKAGGGSYQWGKNNKVTDNVLDNNLNGPVKVMVAPQAEICGNSCSTGRCDPTVLSSKDDELRD 574
            + + V   ++ + G+ +   ++   NGEG+Y+GTSS+QW      NG D    N +  N I T  +E +D+KEG+S N I +N     +   +G    RGD N    N  + CT AGVR+GG          +Q+G NN V  N       G +KV+V  Q +ICGN+C  G C  ++    + E RD
Sbjct:  179 VNAQVTGNTISNCGVHDYMFNSEDKNGEGVYIGTSSTQWT-----NGEDTCNGNVVSRNLISTSGNECVDIKEGSSGNVIEDNFCSDQLDAESGCYDSRGDGNTFRYNVGSECTGAGVRLGGWEVD-----GHQYGVNNSVYGNDFYAVGVGALKVLVGEQGDICGNTCEEGSC--SLTGDDESERRD 354
[Close]
BLAST of mRNA_S-ischiensis_contig90.20882.1 vs. uniprot
Match: D7FIS5_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS5_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 3.110e-18
Identity = 68/189 (35.98%), Postives = 96/189 (50.79%), Query Frame = 2 
Query:   50 GLREVNDDTPAYNGEGIYLGTSSSQWCSDIARNGM-DRSQYNRIYSNNIKTFMSEGIDVKEGASLNEIYNNRVRKSVQETTGGIQIRGDNNHVYENQVTGCTTAGVRIGGSTTAKAGGGSYQWGKNNKVTDNVLDNNLNGPVKVMVAPQAEICGNSCSTGRCDPTVLSSKDDELRDWDQACGVLSPLGP 613
            G+ +  +D    NGEG+Y+GTSSSQW +D   + + D    N I  N I+T  +EGIDVKEG     I  N V     + +GGI  RGD + +  N +     AGVR+GG T         ++GKNN+V  N + +     VKVMV PQ +IC N       D T+  + D++  ++        PL P
Sbjct:   15 GIYDYREDGDGKNGEGVYVGTSSSQWDNDNNWDDVPDVCMGNIIRDNYIRTRGNEGIDVKEGTVDTLIEYNEVYMQYDDDSGGIGSRGDRSIIRYNYIEDTDGAGVRLGGHTVD-----GIEYGKNNQVYGNTMVDCRQSAVKVMVDPQGQICDN-------DVTLPDNVDEDDYEYSGGDFYYDPLKP 191
[Close]
BLAST of mRNA_S-ischiensis_contig90.20882.1 vs. uniprot
Match: A0A6H5JFC7_9PHAE (PPIase cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC7_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 3.770e-18
Identity = 63/177 (35.59%), Postives = 93/177 (52.54%), Query Frame = 2 
Query:   14 YSYVLAPSLFSFGLREVNDDTPAYNGEGIYLGTSSSQWCSDIARNGMDR---SQYNRIYSNNIKTFMSEGIDVKEGASLNEIYNNRVRKSVQETTGGIQIRGDNNHVYENQVTGCTTAGVRIGGSTTAKAGGGSYQWGKNNKVTDNVLDNNLNGPVKVMVAPQAEICGNSCSTGRCD 535
            YS V    + + G  +   +  + NGEGIYLGTSS+QW  D  +N  D    S YN  + N+  T  +EGID+KEGA  N + +N         +  +  RGD+N    N       AG+RIGG    K  G  +Q+G+NN+V +N+L+NN    +K+ ++PQ  +C N     + D
Sbjct:  483 YSQVYNNRITNCGTHDYVMNGSSKNGEGIYLGTSSNQW--DDGKNPSDEPDESSYNHFFKNHFDTQGNEGIDIKEGARYNIVEDNYCTGQKDPNSACLDARGDSNIFRFNTCEDNLGAGIRIGGH---KIDG--HQYGQNNEVYENLLENNGYAGIKITMSPQGAVCSNDILGSKYD 652
[Close]
BLAST of mRNA_S-ischiensis_contig90.20882.1 vs. uniprot
Match: E8T6H9_THEA1 (Secreted protein n=1 Tax=Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1) TaxID=648996 RepID=E8T6H9_THEA1)

HSP 1 Score: 92.4 bits (228), Expect = 3.730e-17
Identity = 61/159 (38.36%), Postives = 86/159 (54.09%), Query Frame = 2 
Query:   35 SLFSFGLREVNDDTPAYNGEGIYLGTSSSQWCSDIARNGMDRSQYNRIYSNNIKTFMSEGIDVKEGASLNEIYNNRVRKSVQETTGGIQIRGDNNHVYENQVTGCTTAGVRIGGSTTAKAGGGSYQWGKNNKVTDNVLDNNLNGPVKVMVAPQAEICGN 511
            S+   GLR+        NGEGIY+GT+  Q          D ++   I  N I T+ +E +DVKEGA+   I NN   KS+Q+T+GGI +RG+   +  N V     AG+R+GG T         ++G  N+VT N LDNNL   +K+M  PQ ++C N
Sbjct:  202 SISHCGLRDFVFGRGKQNGEGIYVGTAPEQ-----THGHPDHTKNILIRYNTIATYGAECVDVKEGATKIVIENNVCLKSMQKTSGGISVRGNREVIRYNIVFDNKGAGIRLGGDTK--------EFGIENEVTYNFLDNNLKAALKIMRTPQDKMCSN 347
[Close]
BLAST of mRNA_S-ischiensis_contig90.20882.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 9.670e-15
Identity = 54/159 (33.96%), Postives = 78/159 (49.06%), Query Frame = 2 
Query:   50 GLREVNDDTPAYNGEGIYLGTSSSQWCSDIARNGMDRSQYNRIYSNNIKTFMSEGIDVKEGASLNEIYNNRVRKSVQETTGGIQIRGDNNHVYENQVTGCTTAGVRIGGSTTAKAGGGSYQWGKNNKVTDNVLDNNLNGPVKVMVAPQAEICGNSCSTG 526
            G+R+        NGEGIY+GTSS+QW SD    G D    N I  N I    +E +D+KEG++   +  N     + E +G    RGD N    N  + C   GVRIGG          +++G++N + +N      +G +     PQ ++CGNSC  G
Sbjct:  165 GVRDFVYGNSGKNGEGIYVGTSSTQW-SD----GPDECNDNTITGNTITPNGNECVDIKEGSTGTIVEENTCSGQLDEDSGCFGSRGDGNVFRYNTASDCLGVGVRIGGWEVD-----GHKYGQDNSIYENSFTRAESGGLSFFALPQGKVCGNSCQGG 313
[Close]
BLAST of mRNA_S-ischiensis_contig90.20882.1 vs. uniprot
Match: UPI001182AEF9 (right-handed parallel beta-helix repeat-containing protein n=2 Tax=Catellatospora TaxID=53365 RepID=UPI001182AEF9)

HSP 1 Score: 79.3 bits (194), Expect = 1.040e-12
Identity = 61/180 (33.89%), Postives = 89/180 (49.44%), Query Frame = 2 
Query:   59 EVNDDTPAYNGEGIYLGTSSSQWCSDIARNGMDRSQYNRIYSNNIKTFMSEGIDVKEGASLNEI-YNNRVRKSVQE-TTGGIQIRGDNNHVYENQVTGCTTAGVRIGGSTTAKAGGGSYQWGKNNKVTDNVLDNNLNGPVKVM-VAPQAEICGNSCSTGRCDPTVLSSKDDELRDWDQAC 589
            +V + T   NGEG+Y+GT+  Q   + +    D S  NR+Y N   T  +E +DVKEGAS N+I +N    ++ +   +G I+ RG  N +  N +     AGVRIGG     A G        N V  N + +N  G +KV    P   ICGN+ S G     ++ +  D++ D   AC
Sbjct:  195 QVPNTTTGQNGEGVYIGTAPEQTYLNPSPEP-DASNGNRVYGNVFDTRGAECVDVKEGASHNDIAFNTCTGQAARNGNSGAIESRGSYNTIRGNVIHHNAAAGVRIGGDLPGDAVG--------NDVYANTITDNARGGIKVQEFGPHGRICGNTMS-GNVGGDLIGTYADQVADPTAAC 364
[Close]
BLAST of mRNA_S-ischiensis_contig90.20882.1 vs. uniprot
Match: A0A543D166_9PSEU (Uncharacterized protein DUF1565 n=1 Tax=Pseudonocardia kunmingensis TaxID=630975 RepID=A0A543D166_9PSEU)

HSP 1 Score: 73.6 bits (179), Expect = 8.850e-11
Identity = 54/145 (37.24%), Postives = 70/145 (48.28%), Query Frame = 2 
Query:   86 NGEGIYLGTSSSQWCSDIARNGMDRSQYNRIYSNNIKTFMSEGIDVKEGASLNEIYNNRVRKSVQET--TGGIQIRGDNNHVYENQVTGCTTAGVRIGGSTTAKAGGGSYQWGKNNKVTDNVLDNNLNGPVKVM-VAPQAEICGN 511
            NGEGIY+GT+  Q   + +    D S  NR++ N I T   E +D+KEGAS N++  N     +     +G +  RG  N    N +     AGVRIGG     A G        N V DNV+  N  G +KV    PQ  ICGN
Sbjct:  200 NGEGIYIGTAPEQTDRNPSPEP-DASNGNRVHRNVIDTDGGECVDIKEGASHNDVAFNTCTGQLPRNGNSGAMDTRGSYNTFRSNHIHHNAAAGVRIGGDRPGDAVG--------NAVRDNVITGNARGGIKVQDPGPQGAICGN 335
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig90.20882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FXR8_ECTSI9.780e-2034.95FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5JYT7_9PHAE1.480e-1938.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3L7_ECTSI7.110e-1935.59FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FXR9_ECTSI2.180e-1834.04FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FIS5_ECTSI3.110e-1835.98FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5JFC7_9PHAE3.770e-1835.59PPIase cyclophilin-type domain-containing protein ... [more]
E8T6H9_THEA13.730e-1738.36Secreted protein n=1 Tax=Thermovibrio ammonificans... [more]
A0A6H5KT05_9PHAE9.670e-1533.96Beta_helix domain-containing protein n=2 Tax=Ectoc... [more]
UPI001182AEF91.040e-1233.89right-handed parallel beta-helix repeat-containing... [more]
A0A543D166_9PSEU8.850e-1137.24Uncharacterized protein DUF1565 n=1 Tax=Pseudonoca... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig90contigS-ischiensis_contig90:428825..433092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score82.0
Seed ortholog evalue3.3e-13
Seed eggNOG ortholog1120963.KB894498_gene2407
EggNOG free text desc.Parallel beta-helix repeats
EggNOG OGs1NHJ7@1224,1SHNB@1236,COG3420@1,COG3420@2
COG Functional cat.P
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size1138
Cds size576
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig90.20882.1prot_S-ischiensis_contig90.20882.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig90 428976..432681 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817411.1290448-UTR-S-ischiensis_contig90:428824..4289751622817411.1290448-UTR-S-ischiensis_contig90:428824..428975Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 428825..428975 +
1695741094.7247424-UTR-S-ischiensis_contig90:428824..4289751695741094.7247424-UTR-S-ischiensis_contig90:428824..428975Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 428825..428975 +
1622817411.2019646-UTR-S-ischiensis_contig90:432681..4330921622817411.2019646-UTR-S-ischiensis_contig90:432681..433092Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 432682..433092 +
1695741094.7890759-UTR-S-ischiensis_contig90:432681..4330921695741094.7890759-UTR-S-ischiensis_contig90:432681..433092Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 432682..433092 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817411.1447349-CDS-S-ischiensis_contig90:428975..4290861622817411.1447349-CDS-S-ischiensis_contig90:428975..429086Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 428976..429086 +
1695741094.743415-CDS-S-ischiensis_contig90:428975..4290861695741094.743415-CDS-S-ischiensis_contig90:428975..429086Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 428976..429086 +
1622817411.158808-CDS-S-ischiensis_contig90:430482..4306501622817411.158808-CDS-S-ischiensis_contig90:430482..430650Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 430483..430650 +
1695741094.7554605-CDS-S-ischiensis_contig90:430482..4306501695741094.7554605-CDS-S-ischiensis_contig90:430482..430650Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 430483..430650 +
1622817411.173818-CDS-S-ischiensis_contig90:431557..4316551622817411.173818-CDS-S-ischiensis_contig90:431557..431655Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 431558..431655 +
1695741094.7669585-CDS-S-ischiensis_contig90:431557..4316551695741094.7669585-CDS-S-ischiensis_contig90:431557..431655Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 431558..431655 +
1622817411.1871324-CDS-S-ischiensis_contig90:432482..4326811622817411.1871324-CDS-S-ischiensis_contig90:432482..432681Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 432483..432681 +
1695741094.7784867-CDS-S-ischiensis_contig90:432482..4326811695741094.7784867-CDS-S-ischiensis_contig90:432482..432681Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 432483..432681 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig90.20882.1

>prot_S-ischiensis_contig90.20882.1 ID=prot_S-ischiensis_contig90.20882.1|Name=mRNA_S-ischiensis_contig90.20882.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=192bp
MDRSQYNRIYSNNIKTFMSEGIDVKEGASLNEIYNNRVRKSVQETTGGIQ
IRGDNNHVYENQVTGCTTAGVRIGGSTTAKAGGGSYQWGKNNKVTDNVLD
NNLNGPVKVMVAPQAEICGNSCSTGRCDPTVLSSKDDELRDWDQACGVLS
PLGPPTYPQFEGCPAALVAPALVVEAIEAQPAGGDAVSLII*
back to top

mRNA from alignment at S-ischiensis_contig90:428825..433092+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig90.20882.1 ID=mRNA_S-ischiensis_contig90.20882.1|Name=mRNA_S-ischiensis_contig90.20882.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4268bp|location=Sequence derived from alignment at S-ischiensis_contig90:428825..433092+ (Schizocladia ischiensis KU_0333)
GTGTACTCACATATACTCGTATGTACTCGCACCCTCGCTTTTTTCTTTTG
GGCTCCGGGAAGTGAACGACGACACACCGGCGTACAACGGGGAGGGTATT
TACCTGGGGACATCCTCCAGCCAGTGGTGCTCGGACATCGCGAGGAACGG
GATGGACCGTAGCCAGTACAACCGCATATACTCCAACAACATCAAGACGT
TCATGTCCGAGGGGATAGACGTCAAGGAGGGGGCCTCGCTGAACGAGATA
TACAATAACAGGGTGAGCAAAGGAGTGTTAGTGGGGACCAGTGATGGAAT
ATCTAGGCAAACCAAACTATATATTGGCTGATCTATATATCTATCGATAG
TCGATAGTTGAATTCAAGAAGTAGTTCACAATGCCGCCCACACAATCAGT
CGAGCCCGATAGCTATCTACTGATCGATATTCCATCACTGATGGGGACAT
GACAACCCGGGGCTATATCAGGAGCAGACCATGTGACGAAGGACCTCGAC
GGTGGTAAATGCCTGCCTTAGCTCGCCAGGGAATTAACTGTTGAGGGAGG
AGGAGGAGGAGGAGGGGGAGGGGGAGGAGGAGGAGAAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGGAAAGGAAGCGGACAATAGTGTAGGTAG
ACCACAGTTTTTTAGTACTTCGAGAAGCAAATAGTATACGGAAGTGACAC
AGTGAACAAATAGGTAGTGCTGGTGTGGGCAGCGGTGCTAGTACAGTAGA
GCGGAAGTGCAGGTTGGTATTAACAGCATAGTTTAAAAAAGTAGCAGGGC
TAGGTGCACGCCACGTCCCTACAGTAGAGATGCCAGCAGCGGCTCTTCCT
TGTAGCTCTTCCTTGTAGCTCACCAGGGAAGGAGTGTGGGGGGAAAGGGA
GTGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAAAGGAAGCGGACAATA
GTGTAGGCAGACTACAGTTTTTTAGTACTTCGAGAAGCAAATAGTATATG
GAGATGACACAGTGAGCAAATAGGTAGTGCTGGTGTGGGCAGGGGTGCTA
GTATAGTAGAGCGGAAGTGCAGGTTGGTATTAACAGCATAGTTTTAAAAA
GTAGCAGGGCTAGGTGCACGCCACGTCACTACCGTAGAGATGCCAGCAGC
GGCTCTTCCTTGTAGCTTGCCAGGGAAGGAGTGTGGGGGGAAAGGGAGTG
GTAGGAGGAGGAGGAGGAGGAGGAAGTGGAGGAATGGGAAAGGGATAGTC
TGTATCAACAGTACAACAGTACAGAATACACGTGAAGAGGGTTGCTACTG
CGCACCATACTGCAATACTTGATGCAGACCCCGCTGGAACAGAGTAGAGT
AATAGTGGAAGTGCTGGTACTTGGAAGTACTCGGAAAATAGAGTGCTCAC
GTCTGCCCACTCGCCAATGCGCGCTCGTGCCACCCACGTGCACGTCCCCC
CCCTCTGTCTCTTCTTTCTCTCTCTCTCTCTCTCCCTGGCCCCCTCCCCC
CCCCCCCTCTCTCGCTCTCTCCCCCCTCTCTCTCCCTCTCTCTCTCTCTC
CTCCCTCCCTCCCTCCCCCCCCTCTTTCTCTCTCTCTCTCTGTCCTTCTC
TCTCACCCCCCCCCCCCTCCCCCCCATGTGTGTGCATGTCCGTCACATTC
ACACGCAGGTGCGCAAGTCCGTCCAGGAAACAACGGGCGGCATTCAAATC
CGTGGGGACAACAACCACGTGTACGAGAACCAGGTCACGGGGTGCACCAC
GGCCGGCGTGCGCATCGGGGGGAGCACTACCGCCAAGGCAGGCGGAGGGA
GCTACCAGTGGGGCAAGAACAACAAGGTCAGACGAACGAGAACACTCAAT
GTTTTGGCTTCTTTGCGTTATTCTTATGCCGTGCGAGTGAAGAGAAGGGC
TTTGGTGAGGTCTCAACCCTAGGTCGTTGGCACGGGGCACGGAGCTCGCA
TACCATCACAATAGCTAAAAAGGCGGCGGGAGCTATCAGTGGGGCAAGAA
CAACAAGGTCAGACAAACACGCTCCTAGCTGCTTCAACTCTGATGTGACA
ACCATTAATACGAGAACGCTCAATTCTTACGTGGGATAACCACCAATACG
AGAACATCCATCTCACACGCGTGCCAATCTACCTTGGTACAATTTTTTCT
TTTTTTGGGACTATTTTTTGACATGCGAGCTCCGTACATGAATGACTGCG
CTGCTTGAATGTTGCGCTGCCTACAGGGGTCTGCTCGCCACGCCAACCCT
CCCTCCCTCTCTTTTTTGTTGTTTTTGTGTGTCTCCTTTGCCTCCTTTCA
TGCCTTGCCCCTGCAGAGTTGCGGAGCTGCAGCTGAGATTCCGTTGTGGG
TGTGGTGTGATGTGATGTGATGTCAAAACACGGCAACTATGTTCTGTATA
CACAAGTAGGGCTCTATGTACTGATATGCACCCTACTGCACGGTCGGTAC
TCATACAGTACAGTAGATACACCGTATAGTACACGCACGAGTTCGTGGTT
TGCTACCCGCTGTACACCGCATGCCCACGTCCTCTTTTTACTCACTTTGC
TCTCCCTCCCGCTCCCTCTCCCCTCTCTCCTCTCCGTCTCCCTCCTTCTC
TCTCCCTCTCCTCCCCCCCCCCCCCCCCCCTCCCTCTCGGTCTTCCTCTC
TCTCTTTCTCTCCCTCCCTCCCTCCCTCCCTGCCTCCCTCCCCGTCTCCC
TCCCTGTCTCCTTCCCCCTCTCCCTCTGTGCAGGTGACGGACAACGTACT
GGACAACAACCTGAATGGACCCGTCAAGGTCATGGTCGCTCCTCAGGCGG
AAATATGCGGCAACTCCTGCTCCACCGGCCGGTGAGGCATAACTTACTCA
TGCATACAGTGGAGTACCGCACAGTACAGTACAGTACAGTAGAAGTCCAT
TGCAGTACAGTACAGTAGAAGTCCATTACAGTACAGTACAGTACAATACA
GTACAGTACAGTACAGTACAGTACAGTACAGTACAGTACAGTATGGTATG
CTACAGTACAGTACAGTACAGTACGGTATGCTACAGTACAGTACAGTACA
GTACAGTAGGATACCTTATTCCATGAGAGAGTTGAAGATGTTGCCCCTCC
CAACGCTCTCGGACGTGATGTGATGTGACGTGATTTGATTCGATGCCAAA
CTGTATTGCTGCTGTCGAAGGGCAAACCCCAAGTTTTGACTTTCTGTCGG
CTATAGCTGTGAGCACGCTATTGTAGGATATGGCGCAAGAGGAATATGCC
AATGAGTACACACTAAAGTACATTTGCTTGGGTACACATTCACAGGCATC
GCTTTCCATACTTGTCTGAGAGTGGCACACGCTGCCCCCCCGACCCTTAG
CTCTTTGAGGACAGCGGTACTCATGAGGCCGCCACCTCTGCCGCTGAGAA
CACACGCGGCGCTAGCACGGACCAGTCCATTCCAGTCAATCGTACCTGCT
ACCGCCGCCGCCGCCTGCCTGCCTTACCTACATGCAGGGTTGAAACTTAC
CCCCTTATGTGGTGCCCTTTTAGGTCCTCAATTGGAGGTAGCTAGGGGTA
ATCGCTAGTACAGTAGACCTAAAATGAAGGCTATATAGGCCGGAATTAGC
CTCTAAGTGCCAACCCTGCCTACATGCCCCCTGCCCGGGCCGGCCGCCCC
TCCCCCAGGTGCGACCCGACCGTGCTGTCCTCCAAGGACGACGAGCTCAG
GGACTGGGACCAGGCGTGCGGCGTGCTGTCGCCCCTCGGCCCCCCAACAT
ACCCGCAGTTCGAGGGCTGCCCCGCCGCCCTGGTGGCCCCGGCGCTGGTG
GTGGAGGCAATCGAGGCACAACCGGCCGGGGGGGATGCCGTCTCCCTCAT
CATCTGATCGTCACGTTTTTGTTTTCTTCTTACCCTGCGAGGGAAGGAAG
GGCTTCCGTTGAGTCCTGTTTTGGGACGAGCCTTTAGCACAGGGCCTAGA
ACTCGCCGCGTATCTACCACTCAAAATATGGTAGCAAATGGCGCTGGTGG
AGGTTGTTGCTATGGTTTTCATGATCGTCAGGAAAGATGGTTTTGTGAAT
CTGCCTGGCTACGCGCTGACAGCAACCTTGGTAGAGTCATGTGCAGGTTG
GACCTAGTCTGTCATATGTGTTCGTCATGTGTGTGTGTATGTGTAGCATT
ACACATTGTCAAGTACTCGTACGTAAGCACCTTTGGAAGTGGGTGGTTTT
TCAAGTACTGTGTATGTGTAGCATTACACATTGTCAAGTACTCGTACGTA
AGCACCTTTGGAAGTGGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig90:428825..433092+

>mRNA_S-ischiensis_contig90.20882.1 ID=mRNA_S-ischiensis_contig90.20882.1|Name=mRNA_S-ischiensis_contig90.20882.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1152bp|location=Sequence derived from alignment at S-ischiensis_contig90:428825..433092+ (Schizocladia ischiensis KU_0333)
ATGGACCGTAGCCAGTACAACCGCATATACTCCAACAACATCAAGACGTT
CATGTCCGAGGGGATAGACGTCAAGGAGGGGGCCTCGCTGAACGAGATAT
ACAATAACAGGATGGACCGTAGCCAGTACAACCGCATATACTCCAACAAC
ATCAAGACGTTCATGTCCGAGGGGATAGACGTCAAGGAGGGGGCCTCGCT
GAACGAGATATACAATAACAGGGTGCGCAAGTCCGTCCAGGAAACAACGG
GCGGCATTCAAATCCGTGGGGACAACAACCACGTGTACGAGAACCAGGTC
ACGGGGTGCACCACGGCCGGCGTGCGCATCGGGGGGAGCACTACCGCCAA
GGCAGGCGGAGGGAGCTACCAGTGGGGCAAGAACAACAAGGTGCGCAAGT
CCGTCCAGGAAACAACGGGCGGCATTCAAATCCGTGGGGACAACAACCAC
GTGTACGAGAACCAGGTCACGGGGTGCACCACGGCCGGCGTGCGCATCGG
GGGGAGCACTACCGCCAAGGCAGGCGGAGGGAGCTACCAGTGGGGCAAGA
ACAACAAGGTGACGGACAACGTACTGGACAACAACCTGAATGGACCCGTC
AAGGTCATGGTCGCTCCTCAGGCGGAAATATGCGGCAACTCCTGCTCCAC
CGGCCGGTGACGGACAACGTACTGGACAACAACCTGAATGGACCCGTCAA
GGTCATGGTCGCTCCTCAGGCGGAAATATGCGGCAACTCCTGCTCCACCG
GCCGGTGCGACCCGACCGTGCTGTCCTCCAAGGACGACGAGCTCAGGGAC
TGGGACCAGGCGTGCGGCGTGCTGTCGCCCCTCGGCCCCCCAACATACCC
GCAGTTCGAGGGCTGCCCCGCCGCCCTGGTGGCCCCGGCGCTGGTGGTGG
AGGCAATCGAGGCACAACCGGCCGGGGGGGATGCCGTCTCCCTCATCATC
TGAGTGCGACCCGACCGTGCTGTCCTCCAAGGACGACGAGCTCAGGGACT
GGGACCAGGCGTGCGGCGTGCTGTCGCCCCTCGGCCCCCCAACATACCCG
CAGTTCGAGGGCTGCCCCGCCGCCCTGGTGGCCCCGGCGCTGGTGGTGGA
GGCAATCGAGGCACAACCGGCCGGGGGGGATGCCGTCTCCCTCATCATCT
GA
back to top