mRNA_S-ischiensis_contig11.2202.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2202.1
Unique NamemRNA_S-ischiensis_contig11.2202.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1966990..1968782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size911
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2202.1prot_S-ischiensis_contig11.2202.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1967947..1968456 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.578183-UTR-S-ischiensis_contig11:1966989..19670461622815583.578183-UTR-S-ischiensis_contig11:1966989..1967046Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1966990..1967046 +
1695739784.7709827-UTR-S-ischiensis_contig11:1966989..19670461695739784.7709827-UTR-S-ischiensis_contig11:1966989..1967046Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1966990..1967046 +
1622815583.5888054-UTR-S-ischiensis_contig11:1967928..19679461622815583.5888054-UTR-S-ischiensis_contig11:1967928..1967946Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1967929..1967946 +
1695739784.7809095-UTR-S-ischiensis_contig11:1967928..19679461695739784.7809095-UTR-S-ischiensis_contig11:1967928..1967946Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1967929..1967946 +
1622815583.615397-UTR-S-ischiensis_contig11:1968456..19687821622815583.615397-UTR-S-ischiensis_contig11:1968456..1968782Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1968457..1968782 +
1695739784.8052568-UTR-S-ischiensis_contig11:1968456..19687821695739784.8052568-UTR-S-ischiensis_contig11:1968456..1968782Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1968457..1968782 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.6021993-CDS-S-ischiensis_contig11:1967946..19684561622815583.6021993-CDS-S-ischiensis_contig11:1967946..1968456Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1967947..1968456 +
1695739784.7959223-CDS-S-ischiensis_contig11:1967946..19684561695739784.7959223-CDS-S-ischiensis_contig11:1967946..1968456Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1967947..1968456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2202.1

>prot_S-ischiensis_contig11.2202.1 ID=prot_S-ischiensis_contig11.2202.1|Name=mRNA_S-ischiensis_contig11.2202.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=170bp
MLAVLTNPVYQTALAELSRLLMSNEAAVMIPVQAHIWKAARPVVAPLPRI
VAVTITAVKQETYRGYPATPFHEEYWEEGHHDSADPAEQLWVGFIHMIEE
RGEERILGCGTGKAVCWNACGACTRIMPRARRSTSVSALWAWQMSLRVTA
MRGAWGMQKHPSYDIQQGI*
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mRNA from alignment at S-ischiensis_contig11:1966990..1968782+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2202.1 ID=mRNA_S-ischiensis_contig11.2202.1|Name=mRNA_S-ischiensis_contig11.2202.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1793bp|location=Sequence derived from alignment at S-ischiensis_contig11:1966990..1968782+ (Schizocladia ischiensis KU_0333)
CATAGCTTCCCGCAAAAGGGGAGAGGAACAGGGAGAGAGGGGAACCTATC
AAGGGCGGTGAGTGCATCGTGGGAAGAGTCTGTCGTACGCCGGGTGTGAC
GGGGGCGGGAGTTGGACACCGCGACCCGCGATTTGGCACATCTTTGAAAC
ATCACCCTCTCGTGCGGGTCGGGTCGCGTCGGGCTCGTCTGGTGTATTTG
CCTCGACCCCTGGCACCCGACCCATGCGCCGGGGTTACTGGAAATTTTTG
GCGAACAGGCATGATTTTCATGGCGCCGCTTCCCACGCTGTGTGCATGGG
TCTGAGTGAGCCTACCATAGTAGCATGTACGGTCGAGCTCTGCAAAGTGT
ACGCCCAGTGAAATTTTCGAGAATGTACCATGCTGTTTTCCTGATTTTTC
ACACTATATCCGTTGTTTGTGTCGCCGTCAGTGCCTGTGTATTCCCTGGA
CCCGTGCTGGAAGGCTCATAGAGAACCGAACCACCATGCATAGGCACTCG
TGGATTGTATGGGCCTACTCGGGCTCCCTGGAACGAATAATTGGAGTCTC
CAATGTGTTCATGAATTTGGAGACACCAGAACGAGGAAAGATATTGAAAG
CTTCATGACTGGCTCTCGTACTTGGATAGTTTGCAGGTTGTGTACCCGTC
CGAACACATGCAGGGGGCTTTGCCCAAACTTGTTTGTGACATATTGCCTT
CAACCGATTTCCAGCCAATGTTGGGCCGATTGTCAGGGAGAGGAATTCCA
TGTACTGCGACACGATAGGCATGTTCTCTTTCCTTCTGGGGTCTATTCAT
GGAAACAGTTGTCGGCCTGCGGCTCCATGTCGCATTGTTATGTGCGACTC
CCCAGGGACCGCCCCCGATGGTCCCGATGGTTCCCTCATTGTGCCCCCCT
CCCCCGCCCCTTCACCACTCGTCCTCACTCTGGATGCAGTTTCACCCCAC
CGGCGGCATGCTGGCGGTGCTGACGAACCCGGTCTACCAAACAGCGCTGG
CGGAACTCTCTCGCCTGCTTATGTCCAATGAAGCGGCCGTCATGATCCCG
GTGCAAGCCCACATCTGGAAGGCCGCCCGGCCCGTCGTCGCACCCTTACC
CCGAATCGTGGCCGTGACAATCACTGCCGTCAAGCAAGAGACGTACCGAG
GTTACCCAGCAACGCCGTTCCACGAAGAATATTGGGAGGAGGGTCACCAC
GATTCGGCAGACCCGGCCGAGCAGCTCTGGGTCGGGTTCATCCATATGAT
TGAGGAGCGCGGCGAGGAGCGGATCTTGGGTTGCGGTACCGGGAAGGCAG
TCTGCTGGAACGCATGCGGAGCCTGTACGAGGATTATGCCAAGGGCGAGG
CGGTCAACATCTGTCTCAGCTCTTTGGGCATGGCAGATGAGTTTGCGTGT
GACGGCGATGCGGGGGGCTTGGGGGATGCAAAAGCATCCTTCGTACGATA
TCCAACAGGGCATTTAACGAAATTGACAACCATCTCCAGGACGGGGATGA
TGGGCGCGTGAAGGAGCTCACTGTAGACGGGGCGACCATTTCCGTGTGCG
CCCCCGCTGGACGGTCGCGCGGCAGAGGATTCCGGGTGCTAGGCTCGACT
GTAGATATAGCGACCAAAGACGCGGTGGTTGAGCGACTGCAGGCGGAGAG
TCTGCAGGTGCGCGGTGGCGTGGGCCTGGACGATCGGGTGATGCCCTACT
CGCAGGCCGGCGCCACATTTCGCGACGTGTGGGTGGACGGGCTCGGCGGC
GAGTCTGTGAGGGCGGGGGCCATCGGGGAGTATTGCGGGTGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:1966990..1968782+

>mRNA_S-ischiensis_contig11.2202.1 ID=mRNA_S-ischiensis_contig11.2202.1|Name=mRNA_S-ischiensis_contig11.2202.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1020bp|location=Sequence derived from alignment at S-ischiensis_contig11:1966990..1968782+ (Schizocladia ischiensis KU_0333)
ATGCTGGCGGTGCTGACGAACCCGGTCTACCAAACAGCGCTGGCGGAACT
CTCTCGCCTGCTTATGTCCAATGAAGCGGCCGTCATGATCCCGGTGCAAG
CCCACATCTGGAAGGCCGCCCGGCCCGTCGTCGCACCCTTACCCCGAATC
GTGGCCGTGACAATCACTGCCGTCAAGCAAGAGACGTACCGAGGTTACCC
AGCAACGCCGTTCCACGAAGAATATTGGGAGGAGGGTCACCACGATTCGG
CAGACCCGGCCGAGCAGCTCTGGGTCGGGTTCATCCATATGATTGAGGAG
CGCGGCGAGGAGCGGATCTTGGGTTGCGGTACCGGGAAGGCAGTCTGCTG
GAACGCATGCGGAGCCTGTACGAGGATTATGCCAAGGGCGAGGCGGTCAA
CATCTGTCTCAGCTCTTTGGGCATGGCAGATGAGTTTGCGTGTGACGGCG
ATGCGGGGGGCTTGGGGGATGCAAAAGCATCCTTCGTACGATATCCAACA
GGGCATTTAAATGCTGGCGGTGCTGACGAACCCGGTCTACCAAACAGCGC
TGGCGGAACTCTCTCGCCTGCTTATGTCCAATGAAGCGGCCGTCATGATC
CCGGTGCAAGCCCACATCTGGAAGGCCGCCCGGCCCGTCGTCGCACCCTT
ACCCCGAATCGTGGCCGTGACAATCACTGCCGTCAAGCAAGAGACGTACC
GAGGTTACCCAGCAACGCCGTTCCACGAAGAATATTGGGAGGAGGGTCAC
CACGATTCGGCAGACCCGGCCGAGCAGCTCTGGGTCGGGTTCATCCATAT
GATTGAGGAGCGCGGCGAGGAGCGGATCTTGGGTTGCGGTACCGGGAAGG
CAGTCTGCTGGAACGCATGCGGAGCCTGTACGAGGATTATGCCAAGGGCG
AGGCGGTCAACATCTGTCTCAGCTCTTTGGGCATGGCAGATGAGTTTGCG
TGTGACGGCGATGCGGGGGGCTTGGGGGATGCAAAAGCATCCTTCGTACG
ATATCCAACAGGGCATTTAA
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