prot_S-ischiensis_contig90.20871.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig90.20871.1
Unique Nameprot_S-ischiensis_contig90.20871.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length128
Homology
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BLAST of mRNA_S-ischiensis_contig90.20871.1 vs. uniprot
Match: D8LGT1_ECTSI (RRM domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGT1_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 6.100e-29
Identity = 59/88 (67.05%), Postives = 67/88 (76.14%), Query Frame = 0 
Query:   21 GPFLQEKRGEQTRHVKGVVERVLKEHQEAGRLDRSELDDAAVAVLEKFSGKVIARAVKDYCDKPDRLELRNPSAWFTHHAHRLAFEED 108
            G  +QEKRGEQ   +K VV+RVL E   AGRL ++ELD+AA  VLEK   KV+ RAVKDYCDKPDRLEL+NPSAWFTHHAH L F  D
Sbjct:  269 GERIQEKRGEQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKMEAKVMERAVKDYCDKPDRLELQNPSAWFTHHAHELCFRSD 356
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BLAST of mRNA_S-ischiensis_contig90.20871.1 vs. uniprot
Match: A0A6H5KAW2_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW2_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 3.020e-28
Identity = 58/88 (65.91%), Postives = 66/88 (75.00%), Query Frame = 0 
Query:   21 GPFLQEKRGEQTRHVKGVVERVLKEHQEAGRLDRSELDDAAVAVLEKFSGKVIARAVKDYCDKPDRLELRNPSAWFTHHAHRLAFEED 108
            G  +QEKRG+Q   +K VV+RVL E   AGRL ++ELD+AA  VLEK   KV+ RAVKDYCDKPDRLEL NPSAWFTHHAH L F  D
Sbjct:  284 GERIQEKRGQQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKMEAKVMERAVKDYCDKPDRLELHNPSAWFTHHAHELCFRSD 371
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BLAST of mRNA_S-ischiensis_contig90.20871.1 vs. uniprot
Match: A0A836CEL8_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEL8_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.440e-16
Identity = 47/91 (51.65%), Postives = 57/91 (62.64%), Query Frame = 0 
Query:   28 RGEQTRHVKGVVERVLKEHQEAGRLDRSELDDAAVAVLEKFSGKVIARAVKDYCDKPDRLELRNPSAWFTHHAHRLAFEE--DLDAEEPEA 116
            R EQ  H+K  V R++ E    G L   ELD  AV VLEKF GKV+ +A+ DYC KPD+  LRN SA+F H  H +AF+E  DLD E  EA
Sbjct:  261 REEQKAHMKDTVARIMGEFIAKGLLKEGELDVDAVRVLEKFEGKVVEKALSDYCVKPDKATLRNKSAYFVHITHGIAFDEALDLDKEVEEA 351
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig90.20871.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LGT1_ECTSI6.100e-2967.05RRM domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A6H5KAW2_9PHAE3.020e-2865.91RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CEL8_9STRA3.440e-1651.65RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig90contigS-ischiensis_contig90:332436..334693 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig90.20871.1mRNA_S-ischiensis_contig90.20871.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig90 332324..334693 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig90.20871.1 ID=prot_S-ischiensis_contig90.20871.1|Name=mRNA_S-ischiensis_contig90.20871.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=128bp
MLLLYSSWTPQHKRNTLHGIGPFLQEKRGEQTRHVKGVVERVLKEHQEAG
RLDRSELDDAAVAVLEKFSGKVIARAVKDYCDKPDRLELRNPSAWFTHHA
HRLAFEEDLDAEEPEAELGNNGDNGDKR
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