mRNA_S-ischiensis_contig90.20871.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig90.20871.1
Unique NamemRNA_S-ischiensis_contig90.20871.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig90.20871.1 vs. uniprot
Match: D8LGT1_ECTSI (RRM domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGT1_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 2.300e-28
Identity = 59/88 (67.05%), Postives = 67/88 (76.14%), Query Frame = 2 
Query:  173 GPFLQEKRGEQTRHVKGVVERVLKEHQEAGRLDRSELDDAAVAVLEKFSGKVIARAVKDYCDKPDRLELRNPSAWFTHHAHRLAFEED 436
            G  +QEKRGEQ   +K VV+RVL E   AGRL ++ELD+AA  VLEK   KV+ RAVKDYCDKPDRLEL+NPSAWFTHHAH L F  D
Sbjct:  269 GERIQEKRGEQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKMEAKVMERAVKDYCDKPDRLELQNPSAWFTHHAHELCFRSD 356
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BLAST of mRNA_S-ischiensis_contig90.20871.1 vs. uniprot
Match: A0A6H5KAW2_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW2_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.140e-27
Identity = 58/88 (65.91%), Postives = 66/88 (75.00%), Query Frame = 2 
Query:  173 GPFLQEKRGEQTRHVKGVVERVLKEHQEAGRLDRSELDDAAVAVLEKFSGKVIARAVKDYCDKPDRLELRNPSAWFTHHAHRLAFEED 436
            G  +QEKRG+Q   +K VV+RVL E   AGRL ++ELD+AA  VLEK   KV+ RAVKDYCDKPDRLEL NPSAWFTHHAH L F  D
Sbjct:  284 GERIQEKRGQQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKMEAKVMERAVKDYCDKPDRLELHNPSAWFTHHAHELCFRSD 371
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BLAST of mRNA_S-ischiensis_contig90.20871.1 vs. uniprot
Match: A0A836CEL8_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEL8_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.160e-15
Identity = 47/91 (51.65%), Postives = 57/91 (62.64%), Query Frame = 2 
Query:  194 RGEQTRHVKGVVERVLKEHQEAGRLDRSELDDAAVAVLEKFSGKVIARAVKDYCDKPDRLELRNPSAWFTHHAHRLAFEE--DLDAEEPEA 460
            R EQ  H+K  V R++ E    G L   ELD  AV VLEKF GKV+ +A+ DYC KPD+  LRN SA+F H  H +AF+E  DLD E  EA
Sbjct:  261 REEQKAHMKDTVARIMGEFIAKGLLKEGELDVDAVRVLEKFEGKVVEKALSDYCVKPDKATLRNKSAYFVHITHGIAFDEALDLDKEVEEA 351
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig90.20871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LGT1_ECTSI2.300e-2867.05RRM domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A6H5KAW2_9PHAE1.140e-2765.91RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CEL8_9STRA1.160e-1551.65RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig90contigS-ischiensis_contig90:332324..334693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue1.6e-24
Seed eggNOG ortholog2880.D8LGT1
KEGG koko:K11294
KEGG Pathwayko05130,map05130
EggNOG free text desc.RNA recognition motif
EggNOG OGs2CYJU@1,2S4U0@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-07_005150.1
Exons3
Model size496
Cds size384
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig90.20871.1prot_S-ischiensis_contig90.20871.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig90 332436..334693 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817410.5116808-UTR-S-ischiensis_contig90:332323..3324351622817410.5116808-UTR-S-ischiensis_contig90:332323..332435Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 332324..332435 +
1695741094.1497328-UTR-S-ischiensis_contig90:332323..3324351695741094.1497328-UTR-S-ischiensis_contig90:332323..332435Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 332324..332435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817410.5235128-CDS-S-ischiensis_contig90:332435..3326481622817410.5235128-CDS-S-ischiensis_contig90:332435..332648Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 332436..332648 +
1695741094.1777992-CDS-S-ischiensis_contig90:332435..3326481695741094.1777992-CDS-S-ischiensis_contig90:332435..332648Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 332436..332648 +
1622817410.5377574-CDS-S-ischiensis_contig90:333623..3337151622817410.5377574-CDS-S-ischiensis_contig90:333623..333715Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 333624..333715 +
1695741094.1993139-CDS-S-ischiensis_contig90:333623..3337151695741094.1993139-CDS-S-ischiensis_contig90:333623..333715Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 333624..333715 +
1622817410.5523415-CDS-S-ischiensis_contig90:334614..3346931622817410.5523415-CDS-S-ischiensis_contig90:334614..334693Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 334615..334693 +
1695741094.2096033-CDS-S-ischiensis_contig90:334614..3346931695741094.2096033-CDS-S-ischiensis_contig90:334614..334693Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 334615..334693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig90.20871.1

>prot_S-ischiensis_contig90.20871.1 ID=prot_S-ischiensis_contig90.20871.1|Name=mRNA_S-ischiensis_contig90.20871.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=128bp
MLLLYSSWTPQHKRNTLHGIGPFLQEKRGEQTRHVKGVVERVLKEHQEAG
RLDRSELDDAAVAVLEKFSGKVIARAVKDYCDKPDRLELRNPSAWFTHHA
HRLAFEEDLDAEEPEAELGNNGDNGDKR
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mRNA from alignment at S-ischiensis_contig90:332324..334693+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig90.20871.1 ID=mRNA_S-ischiensis_contig90.20871.1|Name=mRNA_S-ischiensis_contig90.20871.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2370bp|location=Sequence derived from alignment at S-ischiensis_contig90:332324..334693+ (Schizocladia ischiensis KU_0333)
CACATTATACACAAACATATCGTATCACCTTGCATGGCGTTGGCTCCCCC
CTTCAGGAGAAGCGCGGTGAGCAGACACGCCATGTCAAGGGCACTTCTTC
GCCCTAACATGGATGCTGCTGCTCTACAGTAGCTGGACACCCCAACACAA
ACGTAACACCTTGCATGGCATTGGCCCATTCCTTCAGGAGAAGCGCGGGG
AGCAGACACGCCATGTCAAGGGCGTGGTGGAGAGGGTGTTGAAGGAGCAC
CAGGAGGCAGGGAGGCTGGACAGGAGCGAGCTCGATGACGCCGCCGTGGC
CGTCCTAGAGAAGTTCAGCGGAAAGGTGACTTGCTGCTTAGAGGTTAATT
CATAATTATGGCCTAATCAGCCTTCATTTTAGGTCTATTTACCCCTAGTT
ACCTCTAGCCGTGGCCGTCCTCAAGAAGTTCAGCGGAAAGGTGCAGGGTT
AGCACTTGGAGGTTAGTTGCAGCCTAATTAGCCTTCATTTTAGGTCTAAG
TCCCCCTAGTTAGTAATTACCTCTACTGTACGTAAGGGCCTAACAGGGCA
TCACTTAGGGGTTAAGCACCAACCCTACAAAGTCGACTTGCCGCCCTCAC
CGCCGCCGCTGCTGCTGCTGCCTGGACACTGGGGGGGCTACGCATACAAA
ACCGCAGGGCCATCGAGTACTCCAGCAGTAGTGCACCCCTGCGCCCCTGG
CAGAGGCGTGCCCCCCCCCCCCCCACGCCCTCCCATCCTGGCTCTGCCAG
GGGAGGGCCTCCGTCCCACTTGAGGCGCTACTGTACACTCTAGGGGCCAT
TGGTCTTGGGACTACAATATGCCAAGTTCATCACAGTGCGAGGACGAATG
CACTATCTCTACACTGCTCCTGCGAATTTGTCAGGCGTTATTGTAGGTTA
GGGGGAAGGCTTGCGTTGTACTTCGTGTGTATGTATATATATGGAAGGCT
TGCGTTACTTCGTATATATATATACAAGTATATATATGTACTCATTGGCT
TGTCTTGCGACATAACCTTGCGTGCAATGCCGACAGCCCTAAGTCGAAAC
TTCGGGTTTGCCCTCTGATAGGAGTAGCTATTTAGCCATGGACTCTCGCT
AGGGCGCCGTTTTGGTTGGGACGTGGCCCGGGCCCCCGCACGGTTCCCAC
GCTAATGGGCTACTTCTGTGTGCATTTACAAGGGTTTGCTGCCTGCTCGT
ATCCATTCAGTCACGCACTGTGTATGCGCTTCCCTCCCGCCCACCCTCCC
GCCCTCCCTCCCCCTCCCTCCCTCCCCCCCTCCCTCCCATGGCAAATCAG
GTGATTGCGCGCGCAGTGAAGGACTACTGCGACAAGCCCGACCGCTTGGA
GCTGCGCAACCCATCCGCTTGGTTCACGCACCACGCCCACAGGTGACAGA
GGCGCCAGGGTTGGCCTGTGATTCACGTAAATTGCCATCAAAATCATTAA
AAAATTGTACTTTTAAGTAACTTAGGTTGTTGGGCCAGGGCCCGGAACTC
GCATGACTTTAATAGTAGGACAAAAAAATGCAACGAGGTACAATCGCATG
TGTGTGAGATTGAGTGCTCTCATATTGGTGGTTGTCCCCTTTTAGCATTG
AGTGCTATCGTACTACGTATTACTGTAGTGATTATCACATCAAAGAATAA
AAAACAAAGAGGGGGAGGGAACAAAAAGGGGTTGGCGTACCGGAATAATC
GGCTTGATGACTTGCAGTCGACACGAGGACTTCAACTCTATCGCTTTGCG
GATAATAACAACGCGAGGTTGCAGTTCAGATCACCGTGTACTACTGTTGT
GCAAGTGGCCTCAACAGTGCTCGGGCATTTCTTTACTCACAAAGCGGGAG
GAGTGTCAGGGGGGGTGGGAACTGGGGCGAGGGGAGAACAGGGAAGAAGA
GGAGGACGAGGAGCAGGAGGAGGAGGAAGAGGGAGCTACAATTGTGCTAC
GGTTTCATGTCCAATATGCTCGAGCACGAGTTGTGGCAGATTTCACGCGT
CCTGTTGAGCTTATACTTCGTACCACAGTGCTGCACATGCGGACATGAAT
ACTTTGGAGTATTTACTTATTCGCGTCTCATGCAACGAAAATCCCTCGGA
CACGCCTTGGCGGCCGGCAGGCTGGCGTTCGAGGAAGACCTCCGAGTATT
TATTTAAGTCTCATGCAACAACGAAAATCCCCAGCAAACACACTTAGGCG
TAAAACAGGCTGGCGTTCGAGGAAGACCTAAGTAGCACGTCTCATGCAAC
GAAACCCCCCGACACATTTTGTTTTTGTTTTTTGGCGGCAGGCTGGCGTT
CGAGGAAGACCTAGACGCGGAGGAGCCCGAAGCGGAGCTCGGGAACAACG
GCGACAACGGTGACAAGCGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig90:332324..334693+

>mRNA_S-ischiensis_contig90.20871.1 ID=mRNA_S-ischiensis_contig90.20871.1|Name=mRNA_S-ischiensis_contig90.20871.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=768bp|location=Sequence derived from alignment at S-ischiensis_contig90:332324..334693+ (Schizocladia ischiensis KU_0333)
ATGCTGCTGCTCTACAGTAGCTGGACACCCCAACACAAACGTAACACCTT
GCATGGCATTGGCCCATTCCTTCAGGAGAAGCGCGGGGAGCAGACACGCC
ATGTCAAGGGCGTGGTGGAGAGGGTGTTGAAGGAGCACCAGGAGGCAGGG
AGGCTGGACAGGAGCGAGCTCGATGACGCCGCCGTGGCCGTCCTAGAGAA
GTTCAGCGGAAAGATGCTGCTGCTCTACAGTAGCTGGACACCCCAACACA
AACGTAACACCTTGCATGGCATTGGCCCATTCCTTCAGGAGAAGCGCGGG
GAGCAGACACGCCATGTCAAGGGCGTGGTGGAGAGGGTGTTGAAGGAGCA
CCAGGAGGCAGGGAGGCTGGACAGGAGCGAGCTCGATGACGCCGCCGTGG
CCGTCCTAGAGAAGTTCAGCGGAAAGGTGATTGCGCGCGCAGTGAAGGAC
TACTGCGACAAGCCCGACCGCTTGGAGCTGCGCAACCCATCCGCTTGGTT
CACGCACCACGCCCACAGGTGATTGCGCGCGCAGTGAAGGACTACTGCGA
CAAGCCCGACCGCTTGGAGCTGCGCAACCCATCCGCTTGGTTCACGCACC
ACGCCCACAGGCTGGCGTTCGAGGAAGACCTAGACGCGGAGGAGCCCGAA
GCGGAGCTCGGGAACAACGGCGACAACGGTGACAAGCGCGCTGGCGTTCG
AGGAAGACCTAGACGCGGAGGAGCCCGAAGCGGAGCTCGGGAACAACGGC
GACAACGGTGACAAGCGC
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