mRNA_S-ischiensis_contig90.20872.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig90.20872.1
Unique NamemRNA_S-ischiensis_contig90.20872.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig90.20872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig90contigS-ischiensis_contig90:343640..344200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size562
Cds size375
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817408.0410783-UTR-S-ischiensis_contig90:343639..3438251622817408.0410783-UTR-S-ischiensis_contig90:343639..343825Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 343640..343825 +
1695741092.2337313-UTR-S-ischiensis_contig90:343639..3438251695741092.2337313-UTR-S-ischiensis_contig90:343639..343825Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 343640..343825 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817408.05197-CDS-S-ischiensis_contig90:343825..3442001622817408.05197-CDS-S-ischiensis_contig90:343825..344200Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 343826..344200 +
1695741092.244128-CDS-S-ischiensis_contig90:343825..3442001695741092.244128-CDS-S-ischiensis_contig90:343825..344200Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 343826..344200 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig90.20872.1prot_S-ischiensis_contig90.20872.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig90 343826..344200 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig90.20872.1

>prot_S-ischiensis_contig90.20872.1 ID=prot_S-ischiensis_contig90.20872.1|Name=mRNA_S-ischiensis_contig90.20872.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=125bp
MPGKPWGKLRGDRCPSPSRVCPGPPPVHATAIGSPDCRPAGPGPAPVHAA
RGMCAQAGSNSVPLTTTVTRDSELVSRARGRDGLENPTSRHPMITHVTSH
HIVSHHITHRTAAAAPHAFESCLQL
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mRNA from alignment at S-ischiensis_contig90:343640..344200+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig90.20872.1 ID=mRNA_S-ischiensis_contig90.20872.1|Name=mRNA_S-ischiensis_contig90.20872.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=561bp|location=Sequence derived from alignment at S-ischiensis_contig90:343640..344200+ (Schizocladia ischiensis KU_0333)
GTGAATGCGGCGTAATTTGAAGATATTCATTACGACGGCTAGGGCACGCA
GGGCCGCCACAGGGTCAGTCCCCGGGCCGCCGGGCCGGCCAGGGCAGGAC
CGGGACAGAGCCCGAAAGCGGGATCCGCGTCAGCTTCTCGTGTTTTCTCG
TGGCTTCCTTGGAAGACATTCATTACATGGACCACAATGCCTGGCAAGCC
ATGGGGCAAACTAAGAGGCGACCGCTGCCCCAGCCCGTCACGCGTTTGCC
CGGGCCCACCGCCAGTCCATGCCACGGCCATCGGAAGCCCCGACTGCCGC
CCTGCAGGGCCCGGCCCGGCCCCGGTGCACGCTGCACGGGGCATGTGCGC
TCAGGCTGGCAGTAACTCAGTACCCTTGACCACCACCGTCACCAGAGACT
CGGAGCTCGTGAGCCGTGCACGTGGACGCGACGGTCTCGAAAACCCCACG
TCACGACACCCCATGATCACACACGTCACATCACATCATATCGTATCACA
TCACATCACACATCGCACCGCGGCCGCTGCACCGCATGCGTTCGAGTCGT
GCCTGCAGCTT
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Coding sequence (CDS) from alignment at S-ischiensis_contig90:343640..344200+

>mRNA_S-ischiensis_contig90.20872.1 ID=mRNA_S-ischiensis_contig90.20872.1|Name=mRNA_S-ischiensis_contig90.20872.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=750bp|location=Sequence derived from alignment at S-ischiensis_contig90:343640..344200+ (Schizocladia ischiensis KU_0333)
ATGCCTGGCAAGCCATGGGGCAAACTAAGAGGCGACCGCTGCCCCAGCCC
GTCACGCGTTTGCCCGGGCCCACCGCCAGTCCATGCCACGGCCATCGGAA
GCCCCGACTGCCGCCCTGCAGGGCCCGGCCCGGCCCCGGTGCACGCTGCA
CGGGGCATGTGCGCTCAGGCTGGCAGTAACTCAGTACCCTTGACCACCAC
CGTCACCAGAGACTCGGAGCTCGTGAGCCGTGCACGTGGACGCGACGGTC
TCGAAAACCCCACGTCACGACACCCCATGATCACACACGTCACATCACAT
CATATCGTATCACATCACATCACACATCGCACCGCGGCCGCTGCACCGCA
TGCGTTCGAGTCGTGCCTGCAGCTTATGCCTGGCAAGCCATGGGGCAAAC
TAAGAGGCGACCGCTGCCCCAGCCCGTCACGCGTTTGCCCGGGCCCACCG
CCAGTCCATGCCACGGCCATCGGAAGCCCCGACTGCCGCCCTGCAGGGCC
CGGCCCGGCCCCGGTGCACGCTGCACGGGGCATGTGCGCTCAGGCTGGCA
GTAACTCAGTACCCTTGACCACCACCGTCACCAGAGACTCGGAGCTCGTG
AGCCGTGCACGTGGACGCGACGGTCTCGAAAACCCCACGTCACGACACCC
CATGATCACACACGTCACATCACATCATATCGTATCACATCACATCACAC
ATCGCACCGCGGCCGCTGCACCGCATGCGTTCGAGTCGTGCCTGCAGCTT
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