mRNA_S-ischiensis_contig90.20846.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig90.20846.1
Unique NamemRNA_S-ischiensis_contig90.20846.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig90.20846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig90contigS-ischiensis_contig90:68979..69293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size317
Cds size306
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817407.8553734-UTR-S-ischiensis_contig90:68978..689871622817407.8553734-UTR-S-ischiensis_contig90:68978..68987Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 68979..68987 +
1695741092.140982-UTR-S-ischiensis_contig90:68978..689871695741092.140982-UTR-S-ischiensis_contig90:68978..68987Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 68979..68987 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817407.8666346-CDS-S-ischiensis_contig90:68987..692931622817407.8666346-CDS-S-ischiensis_contig90:68987..69293Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 68988..69293 +
1695741092.1536672-CDS-S-ischiensis_contig90:68987..692931695741092.1536672-CDS-S-ischiensis_contig90:68987..69293Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 68988..69293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig90.20846.1prot_S-ischiensis_contig90.20846.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig90 68988..69293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig90.20846.1

>prot_S-ischiensis_contig90.20846.1 ID=prot_S-ischiensis_contig90.20846.1|Name=mRNA_S-ischiensis_contig90.20846.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=102bp
MPYPTRPEHPSKHDLAIARSCKQHSFLEEDKQASGKEQVSLLTRLQGPIT
GSPSFHSPSLAGRRSIVLGTVLPSTAVGMAQVPGFEFPTLTSKRTAYPCP
LL
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mRNA from alignment at S-ischiensis_contig90:68979..69293+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig90.20846.1 ID=mRNA_S-ischiensis_contig90.20846.1|Name=mRNA_S-ischiensis_contig90.20846.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=315bp|location=Sequence derived from alignment at S-ischiensis_contig90:68979..69293+ (Schizocladia ischiensis KU_0333)
TGCAGCGCAATGCCATATCCCACCCGCCCTGAACATCCTTCCAAGCACGA
TTTGGCAATCGCAAGGTCTTGTAAACAGCACAGTTTTTTGGAAGAAGATA
AACAAGCGAGTGGGAAAGAGCAGGTGTCCCTGCTTACGCGACTGCAGGGC
CCCATCACCGGAAGCCCTTCCTTTCACTCGCCTTCACTCGCAGGACGCAG
GTCCATAGTACTCGGTACAGTACTTCCAAGTACAGCAGTAGGTATGGCCC
AGGTCCCGGGTTTTGAGTTTCCGACCCTTACTAGTAAGAGGACGGCATAC
CCTTGTCCACTCCTC
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Coding sequence (CDS) from alignment at S-ischiensis_contig90:68979..69293+

>mRNA_S-ischiensis_contig90.20846.1 ID=mRNA_S-ischiensis_contig90.20846.1|Name=mRNA_S-ischiensis_contig90.20846.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=612bp|location=Sequence derived from alignment at S-ischiensis_contig90:68979..69293+ (Schizocladia ischiensis KU_0333)
ATGCCATATCCCACCCGCCCTGAACATCCTTCCAAGCACGATTTGGCAAT
CGCAAGGTCTTGTAAACAGCACAGTTTTTTGGAAGAAGATAAACAAGCGA
GTGGGAAAGAGCAGGTGTCCCTGCTTACGCGACTGCAGGGCCCCATCACC
GGAAGCCCTTCCTTTCACTCGCCTTCACTCGCAGGACGCAGGTCCATAGT
ACTCGGTACAGTACTTCCAAGTACAGCAGTAGGTATGGCCCAGGTCCCGG
GTTTTGAGTTTCCGACCCTTACTAGTAAGAGGACGGCATACCCTTGTCCA
CTCCTCATGCCATATCCCACCCGCCCTGAACATCCTTCCAAGCACGATTT
GGCAATCGCAAGGTCTTGTAAACAGCACAGTTTTTTGGAAGAAGATAAAC
AAGCGAGTGGGAAAGAGCAGGTGTCCCTGCTTACGCGACTGCAGGGCCCC
ATCACCGGAAGCCCTTCCTTTCACTCGCCTTCACTCGCAGGACGCAGGTC
CATAGTACTCGGTACAGTACTTCCAAGTACAGCAGTAGGTATGGCCCAGG
TCCCGGGTTTTGAGTTTCCGACCCTTACTAGTAAGAGGACGGCATACCCT
TGTCCACTCCTC
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